Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Bowers, Robert M., Kyrpides, Nikos C., Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T. B. K., Schulz, Frederik, Jarett, Jessica, Rivers, Adam R., Eloe-Fadrosh, Emiley A., Tringe, Susannah G., Ivanova, Natalia N., Copeland, Alex, Clum, Alicia, Becraft, Eric D., Malmstrom, Rex R., Birren, Bruce, Podar, Mircea, Bork, Peer, Weinstock, George M., Garrity, George M., Dodsworth, Jeremy A., Yooseph, Shibu, Sutton, Granger, Gloeckner, Frank O., Gilbert, Jack A., Nelson, William C., Hallam, Steven J., Jungbluth, Sean P., Ettema, Thijs J. G., Tighe, Scott, Konstantinidis, Konstantinos T., Liu, Wen-Tso, Baker, Brett J., Rattei, Thomas, Eisen, Jonathan A., Hedlund, Brian, McMahon, Katherine D., Fierer, Noah, Knight, Rob, Finn, Rob, Cochrane, Guy, Karsch-Mizrachi, Ilene, Tyson, Gene W., Rinke, Christian, Lapidus, Alla, Meyer, Folker, Yilmaz, Pelin, Parks, Donovan H., Eren, A. M., Schriml, Lynn, Banfield, Jillian F., Hugenholtz, Philip and Woyke, Tanja (2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology, 35 8: 725-731. doi:10.1038/nbt.3893


Author Bowers, Robert M.
Kyrpides, Nikos C.
Stepanauskas, Ramunas
Harmon-Smith, Miranda
Doud, Devin
Reddy, T. B. K.
Schulz, Frederik
Jarett, Jessica
Rivers, Adam R.
Eloe-Fadrosh, Emiley A.
Tringe, Susannah G.
Ivanova, Natalia N.
Copeland, Alex
Clum, Alicia
Becraft, Eric D.
Malmstrom, Rex R.
Birren, Bruce
Podar, Mircea
Bork, Peer
Weinstock, George M.
Garrity, George M.
Dodsworth, Jeremy A.
Yooseph, Shibu
Sutton, Granger
Gloeckner, Frank O.
Gilbert, Jack A.
Nelson, William C.
Hallam, Steven J.
Jungbluth, Sean P.
Ettema, Thijs J. G.
Tighe, Scott
Konstantinidis, Konstantinos T.
Liu, Wen-Tso
Baker, Brett J.
Rattei, Thomas
Eisen, Jonathan A.
Hedlund, Brian
McMahon, Katherine D.
Fierer, Noah
Knight, Rob
Finn, Rob
Cochrane, Guy
Karsch-Mizrachi, Ilene
Tyson, Gene W.
Rinke, Christian
Lapidus, Alla
Meyer, Folker
Yilmaz, Pelin
Parks, Donovan H.
Eren, A. M.
Schriml, Lynn
Banfield, Jillian F.
Hugenholtz, Philip
Woyke, Tanja
Title Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Journal name Nature Biotechnology   Check publisher's open access policy
ISSN 1546-1696
1087-0156
Publication date 2017-08-01
Year available 2017
Sub-type Critical review of research, literature review, critical commentary
DOI 10.1038/nbt.3893
Open Access Status Not yet assessed
Volume 35
Issue 8
Start page 725
End page 731
Total pages 7
Place of publication New York, United States
Publisher Nature Publishing Group
Language eng
Abstract We present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome-Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity.
Keyword Biotechnology & Applied Microbiology
Biotechnology & Applied Microbiology
Q-Index Code C1
Q-Index Status Provisional Code
Grant ID DEB-1441717
310039
SSF-FFL5
FL150100038
GBMF3801
DEB-1441717
NTL-LTER DEB-1440297
DEB-1344254
1002996
5R01DE024463
DE-AC02-05CH11231
Institutional Status UQ

Document type: Journal Article
Sub-type: Critical review of research, literature review, critical commentary
Collections: HERDC Pre-Audit
School of Chemistry and Molecular Biosciences
Institute for Molecular Bioscience - Publications
 
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