Transposable element detection from whole genome sequence data

Ewing, Adam D. (2015) Transposable element detection from whole genome sequence data. Mobile DNA, 6 24: . doi:10.1186/s13100-015-0055-3


Author Ewing, Adam D.
Title Transposable element detection from whole genome sequence data
Journal name Mobile DNA   Check publisher's open access policy
ISSN 1759-8753
Publication date 2015-12-29
Year available 2015
Sub-type Article (original research)
DOI 10.1186/s13100-015-0055-3
Open Access Status DOI
Volume 6
Issue 24
Total pages 9
Place of publication London, United Kingdom
Publisher BioMed Central Ltd.
Language eng
Abstract The number of software tools available for detecting transposable element insertions from whole genome sequence data has been increasing steadily throughout the last ~5 years. Some of these methods have unique features suiting them for particular use cases, but in general they follow one or more of a common set of approaches. Here, detection and filtering approaches are reviewed in the light of transposable element biology and the current state of whole genome sequencing. We demonstrate that the current state-of-the-art methods still do not produce highly concordant results and provide resources to assist future development in transposable element detection methods.
Keyword Methods
Sequencing
Bioinformatics
Q-Index Code C1
Q-Index Status Provisional Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: Mater Research Institute-UQ (MRI-UQ)
Official 2016 Collection
 
Versions
Version Filter Type
Citation counts: TR Web of Science Citation Count  Cited 14 times in Thomson Reuters Web of Science Article | Citations
Scopus Citation Count Cited 18 times in Scopus Article | Citations
Google Scholar Search Google Scholar
Created: Tue, 12 Jan 2016, 10:34:11 EST by System User on behalf of Scholarly Communication and Digitisation Service