EMMA: a platform for consistent storage and efficient analysis of microarray data

Dondrup, Michael, Goesmann, Alexander, Bartels, Daniela, Kalinowski, Jörn, Krause, Lutz, Linke, Burkhard, Rupp, Oliver, Sczyrba, Alexander, Puehler, Alfred and Meyer, Folker (2003) EMMA: a platform for consistent storage and efficient analysis of microarray data. Journal of Biotechnology, 106 2-3: 135-146. doi:10.1016/j.jbiotec.2003.08.010


Author Dondrup, Michael
Goesmann, Alexander
Bartels, Daniela
Kalinowski, Jörn
Krause, Lutz
Linke, Burkhard
Rupp, Oliver
Sczyrba, Alexander
Puehler, Alfred
Meyer, Folker
Title EMMA: a platform for consistent storage and efficient analysis of microarray data
Journal name Journal of Biotechnology   Check publisher's open access policy
ISSN 0168-1656
1873-4863
Publication date 2003-12-19
Sub-type Article (original research)
DOI 10.1016/j.jbiotec.2003.08.010
Open Access Status Not yet assessed
Volume 106
Issue 2-3
Start page 135
End page 146
Total pages 12
Place of publication Amsterdam, Netherlands
Publisher Elsevier BV
Language eng
Abstract As a high throughput technique, microarray experiments produce large data sets, consisting of measured data, laboratory protocols, and experimental settings. We have implemented the open source platform EMMA to store and analyze these data. The system provides automated pipelines for data processing and has a modular architecture that can be easily extended. EMMA features detailed reports about spots and their corresponding measurements. In addition to routine data analysis algorithms, the system can be integrated with other components that contain additional data sources (e.g. genome annotation systems).
Keyword Data integration
Gene expression analysis
Microarrays
Transcriptomics
Q-Index Code C1
Q-Index Status Provisional Code
Institutional Status Non-UQ

Document type: Journal Article
Sub-type: Article (original research)
Collection: UQ Diamantina Institute Publications
 
Versions
Version Filter Type
Citation counts: TR Web of Science Citation Count  Cited 88 times in Thomson Reuters Web of Science Article | Citations
Scopus Citation Count Cited 95 times in Scopus Article | Citations
Google Scholar Search Google Scholar
Created: Sat, 31 Oct 2015, 05:15:24 EST by System User on behalf of Learning and Research Services (UQ Library)