High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus

Bayer, Philipp E, Ruperao, Pradeep, Mason, Annaliese S, Stiller, Jiri, Chan, Chon-Kit Kenneth, Hayashi, Satomi, Long, Yan, Meng, Jinling, Sutton, Tim, Visendi, Paul, Varshney, Rajeev K, Batley, Jacqueline and Edwards, David (2015) High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus. Theoretical and Applied Genetics, 128 6: 1039-1047. doi:10.1007/s00122-015-2488-y


Author Bayer, Philipp E
Ruperao, Pradeep
Mason, Annaliese S
Stiller, Jiri
Chan, Chon-Kit Kenneth
Hayashi, Satomi
Long, Yan
Meng, Jinling
Sutton, Tim
Visendi, Paul
Varshney, Rajeev K
Batley, Jacqueline
Edwards, David
Title High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus
Journal name Theoretical and Applied Genetics   Check publisher's open access policy
ISSN 0040-5752
1432-2242
Publication date 2015-03-10
Year available 2015
Sub-type Article (original research)
DOI 10.1007/s00122-015-2488-y
Volume 128
Issue 6
Start page 1039
End page 1047
Total pages 9
Place of publication Heidelberg, Germany
Publisher Springer
Collection year 2016
Language eng
Abstract The growth of next-generation DNA sequencing technologies has led to a rapid increase in sequence-based genotyping for applications including diversity assessment, genome structure validation and gene–trait association. We have established a skim-based genotyping by sequencing method for crop plants and applied this approach to genotype-segregating populations of Brassica napus and Cicer arietinum. Comparison of progeny genotypes with those of the parental individuals allowed the identification of crossover and non-crossover (gene conversion) events. Our results identify the positions of recombination events with high resolution, permitting the mapping and frequency assessment of recombination in segregating populations.
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: School of Agriculture and Food Sciences
Official 2016 Collection
 
Versions
Version Filter Type
Citation counts: TR Web of Science Citation Count  Cited 11 times in Thomson Reuters Web of Science Article | Citations
Scopus Citation Count Cited 13 times in Scopus Article | Citations
Google Scholar Search Google Scholar
Created: Tue, 24 Mar 2015, 10:47:31 EST by System User on behalf of Scholarly Communication and Digitisation Service