EVpedia: a community web portal for extracellular vesicles research

Kim, Dae-Kyum, Lee, Jaewook, Kim, Sae Rom, Choi, Dong-Sic, Yoon, Yae Jin, Kim, Ji Hyun, Go, Gyeongyun, Nhung, Dinh, Hong, Kahye, Jang, Su Chul, Kim, Si-Hyun, Park, Kyong-Su, Kim, Oh Youn, Park, Hyun Taek, Seo, Ji Hye, Aikawa, Elena, Baj-Krzyworzeka, Monika, van Balkom, Bas W. M., Belting, Mattias, Blanc, Lionel, Bond, Vincent, Bongiovanni, Antonella, Borràs, Francesc E., Buée, Luc, Buzás, Edit I., Cheng, Lesley, Clayton, Aled, Cocucci, Emanuele, Dela Cruz, Charles S., Desiderio, Dominic M., Di Vizio, Dolores, Ekström, Karin, Falcon-Perez, Juan M., Gardiner, Chris, Giebel, Bernd, Greening, David W., Gross, Julia Christina, Gupta, Dwijendra, Hendrix, An, Hill, Andrew F., Hill, Michelle M., Nolte-'t Hoen, Esther, Inal, Jameel, Hwang, Do Won, Jagannadham, Medicharla V., Jayachandran, Muthuvel, Jee, Young-Koo, Jørgensen, Malene, Kim, Kwang Pyo, Kim, Yoon-Keun, Kislinger, Thomas, Lässer, Cecilia, Lee, Dong Soo, Lee, Hakmo, van Leeuwen, Johannes, Lener, Thomas, Liu, Ming-Lin, Lötvall, Jan, Marcilla, Antonio, Mathivanan, Suresh, Möller, Andreas, Morhayim, Jess, Mullier, François, Nazarenko, Irina, Nieuwland, Rienk, Nunes, Diana N., Pang, Ken, Park, Jaesung, Patel, Tushar, Pocsfalvi, Gabriella, del Portillo, Hernando, Putz, Ulrich, Ramirez, Marcel I., Rodrigues, Marcio L., Roh, Tae-Young, Royo, Felix, Sahoo, Susmita, Schiffelers, Raymond, Sharma, Shivani, Siljander, Pia, Simpson, Richard J., Soekmadji, Carolina, Stahl, Philip, Stensballe, Allan, Stępień, Ewa, Tahara, Hidetoshi, Trummer, Arne, Valadi, Hadi, Vella, Laura J., Wai, Sun Nyunt, Witwer, Kenneth, Yáñez-Mó, María, Youn, Hyewon, Zeidler, Reinhard and Gho, Yong Song (2015) EVpedia: a community web portal for extracellular vesicles research. Bioinformatics, 31 6: 933-939. doi:10.1093/bioinformatics/btu741


Author Kim, Dae-Kyum
Lee, Jaewook
Kim, Sae Rom
Choi, Dong-Sic
Yoon, Yae Jin
Kim, Ji Hyun
Go, Gyeongyun
Nhung, Dinh
Hong, Kahye
Jang, Su Chul
Kim, Si-Hyun
Park, Kyong-Su
Kim, Oh Youn
Park, Hyun Taek
Seo, Ji Hye
Aikawa, Elena
Baj-Krzyworzeka, Monika
van Balkom, Bas W. M.
Belting, Mattias
Blanc, Lionel
Bond, Vincent
Bongiovanni, Antonella
Borràs, Francesc E.
Buée, Luc
Buzás, Edit I.
Cheng, Lesley
Clayton, Aled
Cocucci, Emanuele
Dela Cruz, Charles S.
Desiderio, Dominic M.
Di Vizio, Dolores
Ekström, Karin
Falcon-Perez, Juan M.
Gardiner, Chris
Giebel, Bernd
Greening, David W.
Gross, Julia Christina
Gupta, Dwijendra
Hendrix, An
Hill, Andrew F.
Hill, Michelle M.
Nolte-'t Hoen, Esther
Inal, Jameel
Hwang, Do Won
Jagannadham, Medicharla V.
Jayachandran, Muthuvel
Jee, Young-Koo
Jørgensen, Malene
Kim, Kwang Pyo
Kim, Yoon-Keun
Kislinger, Thomas
Lässer, Cecilia
Lee, Dong Soo
Lee, Hakmo
van Leeuwen, Johannes
Lener, Thomas
Liu, Ming-Lin
Lötvall, Jan
Marcilla, Antonio
Mathivanan, Suresh
Möller, Andreas
Morhayim, Jess
Mullier, François
Nazarenko, Irina
Nieuwland, Rienk
Nunes, Diana N.
Pang, Ken
Park, Jaesung
Patel, Tushar
Pocsfalvi, Gabriella
del Portillo, Hernando
Putz, Ulrich
Ramirez, Marcel I.
Rodrigues, Marcio L.
Roh, Tae-Young
Royo, Felix
Sahoo, Susmita
Schiffelers, Raymond
Sharma, Shivani
Siljander, Pia
Simpson, Richard J.
Soekmadji, Carolina
Stahl, Philip
Stensballe, Allan
Stępień, Ewa
Tahara, Hidetoshi
Trummer, Arne
Valadi, Hadi
Vella, Laura J.
Wai, Sun Nyunt
Witwer, Kenneth
Yáñez-Mó, María
Youn, Hyewon
Zeidler, Reinhard
Gho, Yong Song
Title EVpedia: a community web portal for extracellular vesicles research
Journal name Bioinformatics   Check publisher's open access policy
ISSN 1367-4803
1460-2059
Publication date 2015-03-15
Year available 2014
Sub-type Article (original research)
DOI 10.1093/bioinformatics/btu741
Open Access Status Not yet assessed
Volume 31
Issue 6
Start page 933
End page 939
Total pages 7
Place of publication Oxford, United Kingdom
Publisher Oxford University Press
Language eng
Subject 2613 Statistics and Probability
1303 Biochemistry
1312 Molecular Biology
1706 Computer Science Applications
1703 Computational Theory and Mathematics
2605 Computational Mathematics
Abstract Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for EV-related publications and vesicular components are currently challenging. Results: We present an improved version of EVpedia, a public database for EVs research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools and a personalized function. EVpedia includes 6879 publications, 172 080 vesicular components from 263 high-throughput datasets, and has been accessed more than 65 000 times from more than 750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of EV research. Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.
Formatted abstract
Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for EV-related publications and vesicular components are currently challenging.

Results: We present an improved version of EVpedia, a public database for EVs research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools and a personalized function. EVpedia includes 6879 publications, 172 080 vesicular components from 263 high-throughput datasets, and has been accessed more than 65 000 times from more than 750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of EV research.

Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.
Keyword Biochemical Research Methods
Biotechnology & Applied Microbiology
Computer Science, Interdisciplinary Applications
Mathematical & Computational Biology
Statistics & Probability
Biochemistry & Molecular Biology
Biotechnology & Applied Microbiology
Computer Science
Mathematical & Computational Biology
Mathematics
Q-Index Code C1
Q-Index Status Confirmed Code
Grant ID 2014-023004
A120273
2014-048579
10Z20130012243
Institutional Status UQ
Additional Notes Advance Access Publication Date: 10 November 2014

Document type: Journal Article
Sub-type: Article (original research)
Collections: Official 2015 Collection
UQ Diamantina Institute Publications
 
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Created: Thu, 19 Mar 2015, 21:45:55 EST by Kylie Hengst on behalf of UQ Diamantina Institute