|
EVpedia: a community web portal for extracellular vesicles research
Kim, Dae-Kyum, Lee, Jaewook, Kim, Sae Rom, Choi, Dong-Sic, Yoon, Yae Jin, Kim, Ji Hyun, Go, Gyeongyun, Nhung, Dinh, Hong, Kahye, Jang, Su Chul, Kim, Si-Hyun, Park, Kyong-Su, Kim, Oh Youn, Park, Hyun Taek, Seo, Ji Hye, Aikawa, Elena, Baj-Krzyworzeka, Monika, van Balkom, Bas W. M., Belting, Mattias, Blanc, Lionel, Bond, Vincent, Bongiovanni, Antonella, Borràs, Francesc E., Buée, Luc, Buzás, Edit I., Cheng, Lesley, Clayton, Aled, Cocucci, Emanuele, Dela Cruz, Charles S., Desiderio, Dominic M., Di Vizio, Dolores, Ekström, Karin, Falcon-Perez, Juan M., Gardiner, Chris, Giebel, Bernd, Greening, David W., Gross, Julia Christina, Gupta, Dwijendra, Hendrix, An, Hill, Andrew F., Hill, Michelle M., Nolte-'t Hoen, Esther, Inal, Jameel, Hwang, Do Won, Jagannadham, Medicharla V., Jayachandran, Muthuvel, Jee, Young-Koo, Jørgensen, Malene, Kim, Kwang Pyo, Kim, Yoon-Keun, Kislinger, Thomas, Lässer, Cecilia, Lee, Dong Soo, Lee, Hakmo, van Leeuwen, Johannes, Lener, Thomas, Liu, Ming-Lin, Lötvall, Jan, Marcilla, Antonio, Mathivanan, Suresh, Möller, Andreas, Morhayim, Jess, Mullier, François, Nazarenko, Irina, Nieuwland, Rienk, Nunes, Diana N., Pang, Ken, Park, Jaesung, Patel, Tushar, Pocsfalvi, Gabriella, del Portillo, Hernando, Putz, Ulrich, Ramirez, Marcel I., Rodrigues, Marcio L., Roh, Tae-Young, Royo, Felix, Sahoo, Susmita, Schiffelers, Raymond, Sharma, Shivani, Siljander, Pia, Simpson, Richard J., Soekmadji, Carolina, Stahl, Philip, Stensballe, Allan, Stępień, Ewa, Tahara, Hidetoshi, Trummer, Arne, Valadi, Hadi, Vella, Laura J., Wai, Sun Nyunt, Witwer, Kenneth, Yáñez-Mó, María, Youn, Hyewon, Zeidler, Reinhard and Gho, Yong Song (2015) EVpedia: a community web portal for extracellular vesicles research. Bioinformatics, 31 6: 933-939. doi:10.1093/bioinformatics/btu741
|
|
Author
|
Kim, Dae-Kyum Lee, Jaewook Kim, Sae Rom Choi, Dong-Sic Yoon, Yae Jin Kim, Ji Hyun Go, Gyeongyun Nhung, Dinh Hong, Kahye Jang, Su Chul Kim, Si-Hyun Park, Kyong-Su Kim, Oh Youn Park, Hyun Taek Seo, Ji Hye Aikawa, Elena Baj-Krzyworzeka, Monika van Balkom, Bas W. M. Belting, Mattias Blanc, Lionel Bond, Vincent Bongiovanni, Antonella Borràs, Francesc E. Buée, Luc Buzás, Edit I. Cheng, Lesley Clayton, Aled Cocucci, Emanuele Dela Cruz, Charles S. Desiderio, Dominic M. Di Vizio, Dolores Ekström, Karin Falcon-Perez, Juan M. Gardiner, Chris Giebel, Bernd Greening, David W. Gross, Julia Christina Gupta, Dwijendra Hendrix, An Hill, Andrew F. Hill, Michelle M. Nolte-'t Hoen, Esther Inal, Jameel Hwang, Do Won Jagannadham, Medicharla V. Jayachandran, Muthuvel Jee, Young-Koo Jørgensen, Malene Kim, Kwang Pyo Kim, Yoon-Keun Kislinger, Thomas Lässer, Cecilia Lee, Dong Soo Lee, Hakmo van Leeuwen, Johannes Lener, Thomas Liu, Ming-Lin Lötvall, Jan Marcilla, Antonio Mathivanan, Suresh Möller, Andreas Morhayim, Jess Mullier, François Nazarenko, Irina Nieuwland, Rienk Nunes, Diana N. Pang, Ken Park, Jaesung Patel, Tushar Pocsfalvi, Gabriella del Portillo, Hernando Putz, Ulrich Ramirez, Marcel I. Rodrigues, Marcio L. Roh, Tae-Young Royo, Felix Sahoo, Susmita Schiffelers, Raymond Sharma, Shivani Siljander, Pia Simpson, Richard J. Soekmadji, Carolina Stahl, Philip Stensballe, Allan Stępień, Ewa Tahara, Hidetoshi Trummer, Arne Valadi, Hadi Vella, Laura J. Wai, Sun Nyunt Witwer, Kenneth Yáñez-Mó, María Youn, Hyewon Zeidler, Reinhard Gho, Yong Song
|
Title
|
EVpedia: a community web portal for extracellular vesicles research
|
Journal name
|
Bioinformatics Check publisher's open access policy
|
ISSN
|
1367-4803 1460-2059
|
Publication date
|
2015-03-15
|
Year available
|
2014
|
Sub-type
|
Article (original research)
|
DOI
|
10.1093/bioinformatics/btu741
|
Open Access Status
|
Not yet assessed
|
Volume
|
31
|
Issue
|
6
|
Start page
|
933
|
End page
|
939
|
Total pages
|
7
|
Place of publication
|
Oxford, United Kingdom
|
Publisher
|
Oxford University Press
|
Language
|
eng
|
Subject
|
2613 Statistics and Probability 1303 Biochemistry 1312 Molecular Biology 1706 Computer Science Applications 1703 Computational Theory and Mathematics 2605 Computational Mathematics
|
Abstract
|
Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for EV-related publications and vesicular components are currently challenging. Results: We present an improved version of EVpedia, a public database for EVs research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools and a personalized function. EVpedia includes 6879 publications, 172 080 vesicular components from 263 high-throughput datasets, and has been accessed more than 65 000 times from more than 750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of EV research. Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.
|
Formatted abstract
|
Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for EV-related publications and vesicular components are currently challenging.
Results: We present an improved version of EVpedia, a public database for EVs research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools and a personalized function. EVpedia includes 6879 publications, 172 080 vesicular components from 263 high-throughput datasets, and has been accessed more than 65 000 times from more than 750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of EV research.
Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.
|
Keyword
|
Biochemical Research Methods Biotechnology & Applied Microbiology Computer Science, Interdisciplinary Applications Mathematical & Computational Biology Statistics & Probability Biochemistry & Molecular Biology Biotechnology & Applied Microbiology Computer Science Mathematical & Computational Biology Mathematics
|
Q-Index Code
|
C1
|
Q-Index Status
|
Confirmed Code
|
Grant ID
|
2014-023004 A120273 2014-048579 10Z20130012243
|
Institutional Status
|
UQ
|
Additional Notes
|
Advance Access Publication Date: 10 November 2014
|
|
|
|