Stemformatics Normalised Datasets and UCSC tracks

Mosbergen, Rowland and Othmar, Korn (2013): Stemformatics Normalised Datasets and UCSC tracks. The University of Queensland. Collection. doi:10.14264/uql.2017.22

Related Publications and Datasets
Project name Stemformatics Normalised Datasets and UCSC tracks
Project description
Stemformatics is a collaboration between the stem cell and bioinformatics communities. The project was motivated by the plethora of exciting cell models (human and mouse) in the public and private domains, and the realisation that for many biologists these were mostly inaccessible. Our portal provides a means to find and visualise interesting genes in these exemplar stem cell datasets.
Contact name Mosbergen, Rowland
Contact email
Creator name Mosbergen, Rowland
Othmar, Korn
Creator(s) role Stemformatics Project Manager
Main Stemformatics Data Processor
Dataset name Stemformatics Normalised Datasets and UCSC tracks
Dataset description
The Stemformatics portal provides access to a series of public experiments describing mouse and human stem cells and how they differentiate to become mature cells, tissues and organs.   

Data from leading stem cell laboratories has been made available in a format that is easy to search, easy to visualise and easy to export. These normalised public datasets are uploaded to the Stemformatics portal. They include probe mappings, raw data mappings, and annotations of samples.
Access conditions Open Access
Licencing and terms of access Creative Commons Attribution noncommercial

View License Details
ANZSRC Field of Research (FoR) Code 060405 Gene Expression (incl. Microarray and other genome-wide approaches)
0604 Genetics
060408 Genomics
DOI 10.14264/uql.2017.22
Related Publications

Type of data Bioinformatics data files
Text files
Backups of Redis and Postgres
Binary files
Data Volume 4.6 TB
Software required Search, analytical and visualisation tools are supplied through the portal.
Language eng
Keyword Stemformatics
Mouse stem cells
Human stem cells
Gene expression
Collection type Collection
Publisher The University of Queensland
Publication Year 2013
Copyright notice 2013, The University of Queensland
Additional Notes Contact email address: Key citation for use of Stemformatics datasets: Wells CA et al (2013): Stemformatics: Visualisation and sharing of stem cell gene expression. Stem Cell Research, 10 (3), 387-395, doi:

Document type: Data Collection
Collections: Research Data Collections
School of Chemistry and Molecular Biosciences
Version Filter Type
Citation counts: Google Scholar Search Google Scholar
Created: Tue, 19 Nov 2013, 23:46:20 EST by Justin M Clark