Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113(T))

Liolios, Konstantinos, Sikorski, Johannes, Lu, Meagan, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Feng, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Ivanova, Natalia, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne-Marie, Kotsyurbenko, Oleg, Rohde, Manfred, Tindall, Brian J., Abt, Birte, Goker, Markus, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Klenk, Hans-Peter and Kyrpides, Nikos C. (2011) Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113(T)). Standards in Genomic Sciences, 5 1: 30-40. doi:10.4056/sigs.2154937


Author Liolios, Konstantinos
Sikorski, Johannes
Lu, Meagan
Nolan, Matt
Lapidus, Alla
Lucas, Susan
Hammon, Nancy
Deshpande, Shweta
Cheng, Jan-Feng
Tapia, Roxanne
Han, Cliff
Goodwin, Lynne
Pitluck, Sam
Huntemann, Marcel
Ivanova, Natalia
Pagani, Ioanna
Mavromatis, Konstantinos
Ovchinikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Brambilla, Evelyne-Marie
Kotsyurbenko, Oleg
Rohde, Manfred
Tindall, Brian J.
Abt, Birte
Goker, Markus
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Title Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113(T))
Formatted title
 Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113T)
Journal name Standards in Genomic Sciences   Check publisher's open access policy
ISSN 1944-3277
Publication date 2011-01-01
Year available 2011
Sub-type Article (original research)
DOI 10.4056/sigs.2154937
Open Access Status DOI
Volume 5
Issue 1
Start page 30
End page 40
Total pages 11
Place of publication East Lansing, MI, United States
Publisher Michigan State University * Genomic Standards Consortium
Language eng
Abstract Pedobacter saltans Steyn et al. 1998 is one of currently 32 species in the genus Pedobacter within the family Sphingobacteriaceae. The species is of interest for its isolated location in the tree of life. Like other members of the genus P. saltans is heparinolytic. Cells of P. saltans show a peculiar gliding, dancing motility and can be distinguished from other Pedobacter strains by their ability to utilize glycerol and the inability to assimilate D-cellobiose. The genome presented here is only the second completed genome sequence of a type strain from a member of the family Sphingobacteriaceae to be published. The 4,635,236 bp long genome with its 3,854 protein-coding and 67 RNA genes consists of one chromosome, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Formatted abstract
Pedobacter saltans Steyn et al. 1998 is one of currently 32 species in the genus Pedobacter within the family Sphingobacteriaceae. The species is of interest for its isolated location in the tree of life. Like other members of the genus P. saltans is heparinolytic. Cells of P. saltans show a peculiar gliding, dancing motility and can be distinguished from other Pedobacter strains by their ability to utilize glycerol and the inability to assimilate D-cellobiose. The genome presented here is only the second completed genome sequence of a type strain from a member of the family Sphingobacteriaceae to be published. The 4,635,236 bp long genome with its 3,854 protein-coding and 67 RNA genes consists of one chromosome, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project. 
Keyword Strictly aerobic
Gliding motility
Gram-negative
Heparinolytic
Mesophilic
Chemoorganotrophic
Sphingobacteriaceae
GEBA
Q-Index Code C1
Q-Index Status Confirmed Code
Grant ID DE-AC02-05CH11231
DE-AC52-07NA27344
DE-AC02-06NA25396
DE-AC05-00OR22725
INST 599/1-2
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: Official 2012 Collection
School of Chemistry and Molecular Biosciences
 
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