IMG/M: A data management and analysis system for metagenomes

Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, Chen, I-Min A., Grechkin, Yuri, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Hugenholtz, Philip and Kyrpides, Nikos C. (2008) IMG/M: A data management and analysis system for metagenomes. Nucleic Acids Research, 36 Supp. 1: D534-D538. doi:10.1093/nar/gkm869


Author Markowitz, Victor M.
Ivanova, Natalia N.
Szeto, Ernest
Palaniappan, Krishna
Chu, Ken
Dalevi, Daniel
Chen, I-Min A.
Grechkin, Yuri
Dubchak, Inna
Anderson, Iain
Lykidis, Athanasios
Mavromatis, Konstantinos
Hugenholtz, Philip
Kyrpides, Nikos C.
Title IMG/M: A data management and analysis system for metagenomes
Journal name Nucleic Acids Research   Check publisher's open access policy
ISSN 0305-1048
1362-4962
Publication date 2008-01-01
Year available 2008
Sub-type Article (original research)
DOI 10.1093/nar/gkm869
Open Access Status DOI
Volume 36
Issue Supp. 1
Start page D534
End page D538
Total pages 5
Place of publication Oxford, U.K.
Publisher Oxford University Press
Language eng
Subject 1311 Genetics
Abstract IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energys (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data integrated with isolate microbial genomes from the Integrated Microbial Genomes (IMG) system. IMG/M provides IMGs comparative data analysis tools extended to handle metagenome data, together with metagenome-specific analysis tools. IMG/M is available at http://img.jgi.doe.gov/m.
Formatted abstract
IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data integrated with isolate microbial genomes from the Integrated Microbial Genomes (IMG) system. IMG/M provides IMG's comparative data analysis tools extended to handle metagenome data, together with metagenome-specific analysis tools. IMG/M is available at http://img.jgi.doe.gov/m.
Keyword Microbial communities
Protein Families
Gut Microbiome
Genomes
Q-Index Code C1
Q-Index Status Provisional Code
Institutional Status Non-UQ
Additional Notes Special issue: "Database Issue".

Document type: Journal Article
Sub-type: Article (original research)
Collections: ERA 2012 Admin Only
School of Chemistry and Molecular Biosciences
 
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Created: Mon, 28 Nov 2011, 19:44:04 EST by Hong Lee on behalf of School of Chemistry & Molecular Biosciences