Brassica ASTRA: An integrated database for Brassica genomic research

Love, Christopher G., Robinson, Andrew J., Lim, Geraldine A. C., Hopkins, Clare J., Batley, Jacqueline, Barker, Gary, Spangenberg, German C. and Edwards, David (2005) Brassica ASTRA: An integrated database for Brassica genomic research. Nucleic Acids Research, 33 D656-D659. doi:10.1093/nar/gki036


Author Love, Christopher G.
Robinson, Andrew J.
Lim, Geraldine A. C.
Hopkins, Clare J.
Batley, Jacqueline
Barker, Gary
Spangenberg, German C.
Edwards, David
Title Brassica ASTRA: An integrated database for Brassica genomic research
Journal name Nucleic Acids Research   Check publisher's open access policy
ISSN 1362-4962
0305-1048
Publication date 2005-01-01
Year available 2005
Sub-type Article (original research)
DOI 10.1093/nar/gki036
Open Access Status DOI
Volume 33
Start page D656
End page D659
Total pages 4
Place of publication Oxford, U.K.
Publisher Oxford University Press
Language eng
Subject 0703 Crop and Pasture Production
Abstract Brassica ASTRA is a public database for genomic information on Brassica species. The database incorporates expressed sequences with Swiss-Prot and GenBank comparative sequence annotation as well as secondary Gene Ontology (GO) annotation derived from the comparison with Arabidopsis TAIR GO annotations. Simple sequence repeat molecular markers are identified within resident sequences and mapped onto the closely related Arabidopsis genome sequence. Bacterial artificial chromosome (BAC) end sequences derived from the Multinational Brassica Genome Project are also mapped onto the Arabidopsis genome sequence enabling users to identify candidate Brassica BACs corresponding to syntenic regions of Arabidopsis. This information is maintained in a MySQL database with a web interface providing the primary means of interrogation. The database is accessible at http://hornbill.cspp.latrobe.edu.au.
Keyword Biochemistry & Molecular Biology
Resource
Q-Index Code C1
Institutional Status Unknown

Document type: Journal Article
Sub-type: Article (original research)
Collections: Excellence in Research Australia (ERA) - Collection
School of Agriculture and Food Sciences
 
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Created: Thu, 20 Sep 2007, 03:15:33 EST