Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., KELLER, K., Huber, T. L., Dalevi, D., Hu, P. and Andersen, G. L. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology, 72 7: 5069-5072. doi:10.1128/AEM.03006-05

Attached Files (Some files may be inaccessible until you login with your UQ eSpace credentials)
Name Description MIMEType Size Downloads
UQ79446_OA.pdf Full text (open access) application/pdf 142.16KB 0

Author DeSantis, T. Z.
Hugenholtz, P.
Larsen, N.
Rojas, M.
Brodie, E. L.
KELLER, K.
Huber, T. L.
Dalevi, D.
Hu, P.
Andersen, G. L.
Title Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
Journal name Applied and Environmental Microbiology   Check publisher's open access policy
ISSN 0099-2240
Publication date 2006
Sub-type Article (original research)
DOI 10.1128/AEM.03006-05
Open Access Status File (Publisher version)
Volume 72
Issue 7
Start page 5069
End page 5072
Total pages 4
Place of publication Washington
Publisher Amer Soc Microbiology
Collection year 2006
Language eng
Subject C1
270799 Ecology and Evolution not elsewhere classified
780105 Biological sciences
Abstract A 16S rRNA gene database (http://greengenes.bl.gov) addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. It was found that there is incongruent taxonomic nomenclature among curators even at the phylum level. Putative chimeras were identified in 3% of environmental sequences and in 0.2% of records derived from isolates. Environmental sequences were classified into 100 phylum-level lineages in the Archaea and Bacteria.
Keyword Biotechnology & Applied Microbiology
Microbiology
Rdp-ii
Sequence Alignment
Microarray
Software
Dna
Program
Probes
Tool
Identification
Polymorphism
Q-Index Code C1

 
Versions
Version Filter Type
Citation counts: TR Web of Science Citation Count  Cited 2346 times in Thomson Reuters Web of Science Article | Citations
Scopus Citation Count Cited 2432 times in Scopus Article | Citations
Google Scholar Search Google Scholar
Created: Wed, 15 Aug 2007, 08:21:46 EST