AF networks of 2785 microbial genomes

Bernard, Guillaume (2017): AF networks of 2785 microbial genomes. The University of Queensland. Dataset. doi:10.14264/uql.2017.436

Attached Files (Some files may be inaccessible until you login with your UQ eSpace credentials)
Name Description MIMEType Size Downloads
AF_networks.zip Full text (open access) Click to show the corresponding preview/stream application/zip 633.03MB 0
Grappa_results.zip Full text (open access) Click to show the corresponding preview/stream application/zip 111.63MB 0
Project name AF networks of microbial genomes
Project description
Here, using an AF approach, we reconstructed a phylogenomic network of microbial life based on 2785 completely sequenced bacterial and archaeal genomes, and systematically assessed the impact of ribosomal RNA [gene] and plasmid sequences in this network. Using a database approach, we linked the implicated k-mers to annotated genomic regions (thus functions), and defined core functions in specific phyletic groups and genera.
Contact name Chan, Cheong Xin
Contact email c.chan@imb.uq.edu.au
Creator name Bernard, Guillaume
Creator(s) role Chief Investigator
Dataset name AF networks of 2785 microbial genomes
Dataset description
Two distinct folder:
One containing all the interactive networks for 4 different analis of 2685 microbial genomes.
The second one contains the results for the network analysis using Grappa.
Access conditions Open Access
Licencing and terms of access UQ Terms & Conditions Permitted Re-use with Acknowledgement Licence

View License Details
ANZSRC Field of Research (FoR) Code 06 Biological Sciences
0603 Evolutionary Biology
DOI 10.14264/uql.2017.436
Software required Any web-browser
Language eng
Keyword Alignment free methods
Phylogenomics
Networks
Microbial Phylogenomics
Collection type Dataset
Publisher The University of Queensland
Publication Year 2017

Document type: Data Collection
Collection: Research Data Collections
 
Versions
Version Filter Type
Citation counts: Google Scholar Search Google Scholar
Created: Thu, 06 Apr 2017, 13:36:35 EST by Fei Yu