A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution

Hane, James K., Ming, Yao, Kamphuis, Lars G., Nelson, Matthew N., Garg, Gagan, Atkins, Craig A., Bayer, Philipp E., Bravo, Armando, Bringans, Scott, Cannon, Steven, Edwards, David, Foley, Rhonda, Gao, Ling-ling, Harrison, Maria J., Huang, Wei, Hurgobin, Bhavna, Li, Sean, Liu, Cheng-Wu, McGrath, Annette, Morahan, Grant, Murray, Jeremy, Weller, James, Jian, Jianbo and Singh, Karam B. (2017) A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution. Plant Biotechnology Journal, 15 3: 318-330. doi:10.1111/pbi.12615


Author Hane, James K.
Ming, Yao
Kamphuis, Lars G.
Nelson, Matthew N.
Garg, Gagan
Atkins, Craig A.
Bayer, Philipp E.
Bravo, Armando
Bringans, Scott
Cannon, Steven
Edwards, David
Foley, Rhonda
Gao, Ling-ling
Harrison, Maria J.
Huang, Wei
Hurgobin, Bhavna
Li, Sean
Liu, Cheng-Wu
McGrath, Annette
Morahan, Grant
Murray, Jeremy
Weller, James
Jian, Jianbo
Singh, Karam B.
Title A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution
Formatted title
A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution
Journal name Plant Biotechnology Journal   Check publisher's open access policy
ISSN 1467-7652
1467-7644
Publication date 2017-03-01
Year available 2016
Sub-type Article (original research)
DOI 10.1111/pbi.12615
Open Access Status DOI
Volume 15
Issue 3
Start page 318
End page 330
Total pages 13
Place of publication Chichester, West Sussex, United Kingdom
Publisher Wiley-Blackwell Publishing
Collection year 2018
Language eng
Formatted abstract
Lupins are important grain legume crops that form a critical part of sustainable farming systems, reducing fertilizer use and providing disease breaks. It has a basal phylogenetic position relative to other crop and model legumes and a high speciation rate. Narrow-leafed lupin (NLL; Lupinus angustifolius L.) is gaining popularity as a health food, which is high in protein and dietary fibre but low in starch and gluten-free. We report the draft genome assembly (609 Mb) of NLL cultivar Tanjil, which has captured >98% of the gene content, sequences of additional lines and a dense genetic map. Lupins are unique among legumes and differ from most other land plants in that they do not form mycorrhizal associations. Remarkably, we find that NLL has lost all mycorrhiza-specific genes, but has retained genes commonly required for mycorrhization and nodulation. In addition, the genome also provided candidate genes for key disease resistance and domestication traits. We also find evidence of a whole-genome triplication at around 25 million years ago in the genistoid lineage leading to Lupinus. Our results will support detailed studies of legume evolution and accelerate lupin breeding programmes.
Keyword Flowering time genes
Genistoids
Legume comparative genomics
Polyploidy
Synteny
Whole-genome assembly
Q-Index Code C1
Q-Index Status Provisional Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: HERDC Pre-Audit
School of Agriculture and Food Sciences
 
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