Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)

Kappler, Ulrike, Davenport, Karen, Beatson, Scott, Lapidus, Alla, Pan, Chongle, Han, Cliff, Montero-Calasanz, Maria del Carmen, Land, Miriam, Hauser, Loren, Rohde, Manfred, Goeker, Markus, Ivanova, Natalia, Woyke, Tanja, Klenk, Hans-Peter and Kyrpides, Nikos C. (2016) Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T). Standards in Genomic Sciences, 11 38: 1-12. doi:10.1186/s40793-016-0162-x


Author Kappler, Ulrike
Davenport, Karen
Beatson, Scott
Lapidus, Alla
Pan, Chongle
Han, Cliff
Montero-Calasanz, Maria del Carmen
Land, Miriam
Hauser, Loren
Rohde, Manfred
Goeker, Markus
Ivanova, Natalia
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C.
Title Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
Formatted title
Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
Journal name Standards in Genomic Sciences   Check publisher's open access policy
ISSN 1944-3277
Publication date 2016-06-03
Year available 2016
Sub-type Article (original research)
DOI 10.1186/s40793-016-0162-x
Open Access Status DOI
Volume 11
Issue 38
Start page 1
End page 12
Total pages 12
Place of publication London, United Kingdom
Publisher BioMed Central
Collection year 2017
Language eng
Formatted abstract
Thioalkalimicrobium cyclicum Sorokin et al. 2002 is a member of the family Piscirickettsiaceae in the order Thiotrichales. The γ-proteobacterium belongs to the colourless sulfur-oxidizing bacteria isolated from saline soda lakes with stable alkaline pH, such as Lake Mono (California) and Soap Lake (Washington State). Strain ALM 1T is characterized by its adaptation to life in the oxic/anoxic interface towards the less saline aerobic waters (mixolimnion) of the stable stratified alkaline salt lakes. Strain ALM 1T is the first representative of the genus Thioalkalimicrobium whose genome sequence has been deciphered and the fourth genome sequence of a type strain of the Piscirickettsiaceae to be published. The 1,932,455 bp long chromosome with its 1,684 protein-coding and 50 RNA genes was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008.
Keyword Aerobic
Obligate chemolithoautotroph
Sulfur oxidizer
Gram-negative
Mono Lake
Piscirickettsiaceae
CSP 2008
Q-Index Code C1
Q-Index Status Provisional Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: HERDC Pre-Audit
School of Chemistry and Molecular Biosciences
 
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