Advances in plant genotyping: where the future will take us

Patel, Dhwani A., Zander, Manuel, Dalton-Morgan, Jessica and Batley, Jacqueline (2015). Advances in plant genotyping: where the future will take us. In Jacqueline Batley (Ed.), Plant genotyping: methods and protocols (pp. 1-11) New York, NY United States: Humana Press. doi:10.1007/978-1-4939-1966-6_1


Author Patel, Dhwani A.
Zander, Manuel
Dalton-Morgan, Jessica
Batley, Jacqueline
Title of chapter Advances in plant genotyping: where the future will take us
Title of book Plant genotyping: methods and protocols
Place of Publication New York, NY United States
Publisher Humana Press
Publication Year 2015
Sub-type Chapter in reference work, encyclopaedia, manual or handbook
DOI 10.1007/978-1-4939-1966-6_1
Open Access Status Not Open Access
Year available 2015
Series Methods in Molecular Biology
ISBN 9781493919659
9781493919666
ISSN 1064-3745
1940-6029
Editor Jacqueline Batley
Volume number 1245
Chapter number 1
Start page 1
End page 11
Total pages 11
Total chapters 22
Collection year 2016
Language eng
Abstract/Summary Genetic diversity between individuals can be tracked and monitored using a range of molecular markers. These markers can detect variation ranging in scale from a single base pair up to duplications and translocations of entire chromosomal regions. The genotyping of individuals allows the detection of this variation and it has been successfully applied in plant science for many years. The increasing amounts of sequence data able to be generated using next-generation sequencing (NGS) technologies have produced a vast expansion in the rate of discovery of polymorphisms, with single nucleotide polymorphisms (SNPs) predominating as the marker of choice. This increase in polymorphic marker resources through efficient discovery, coupled with the utility of SNPs, has enabled the shift to high-throughput genotyping assays and these methods are reviewed and discussed here, alongside the recent innovations allowing increased throughput.
Keyword Single nucleotide polymorphisms (SNPs)
Next-generation sequencing (NGS)
Genotyping by sequencing (GbS)
Bioinformatics
Q-Index Code BX
Q-Index Status Provisional Code
Institutional Status UQ

Document type: Book Chapter
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