Blast Formatted Next Generation Sequencing (NGS) Data for TAGdb

Edwards, David (2015): Blast Formatted Next Generation Sequencing (NGS) Data for TAGdb. The University of Queensland. Dataset.


 
Related Publications and Datasets
 
Project name Applied Bioinformatics
Project description
The applied bioinformatics group was founded in 2007 at The University of Queensland and moved to the University of Western Australia in January 2015. Since this time, the group has established itself as a leading bioinformatics group in Australia. Our current research activities include the second generation sequencing of complex genomes and metagenomic populations, genome annotation, diversity analysis, trait association and data visualisation.

The group receives funding from the University of Western Australia, the Australian Research Council, the Grains Research and Development Corporation and several industry partners to undertake applied bioinformatics research in genetics and genomics.

The group is led by Professor David Edwards and consists of researchers with diverse backgrounds. We offer training in applied bioinformatics at all levels and publish widely in the fields of genomics, genetics and bioinformatics.
Contact name David Edwards
Contact email Dave.Edwards@uwa.edu.au
Creator name Edwards, David
Creator(s) role Chief Investigator
Dataset name Blast Formatted Next Generation Sequencing (NGS) Data for TAGdb
Dataset description
The TAGdb is an online database enabling researchers to identify paired read sequences that share identity with a submitted query sequence. These tags can be used to design oligonucleotide primers for the PCR amplification of the region in the target genome. This tool is applicable for gene and promoter discovery in a wide range of species and greatly facilitates comparative genomics and molecular marker discovery in orphan crops or those with large and complex genomes.

The collection currently includes Barley, Brassica, Diplotaxis, Hirschfeldia, Lotus, Nicotiana, Pongamia, Rye, Sinapis, Teraselmis and Wheat NGS data.
Access conditions Open Access
ANZSRC Field of Research (FoR) Code 0604 Genetics
0607 Plant Biology
060407 Genome Structure and Regulation
060102 Bioinformatics
Type of data Blast formatted database
FASTA
.nhr
.nin
.nsq
.nal
Data Volume 20TB
Software required Blast formatted database - formats: Fasta, nhr, nin, nsq and nal.
Language eng
Keyword Barley
Brassica
Diplotaxis
Hirschfeldia
Lotus
Nicotiana
Pongamia
Sinapis
Rye
Teraselmis
Wheat
Triticum spp.
Next generation sequencing
Collection type Dataset
Publisher The University of Queensland
Publication Year 2015
Copyright notice 2014, The University of Queensland

Document type: Data Collection
Collections: School of Agriculture and Food Sciences
Research Data Collections
 
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Created: Thu, 07 May 2015, 13:39:13 EST by Belinda Weaver