Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names

Kuhn, Jens H., Andersen, Kristian G., Bào, Yīmíng, Bavari, Sina, Becker, Stephan, Bennett, Richard S., Bergman, Nicholas H., Blinkova, Olga, Bradfute, Steven, Brister, J. Rodney, Bukreyev, Alexander, Chandran, Kartik, Chepurnov, Alexander A., Davey, Robert A., Dietzgen, Ralf G., Doggett, Norman A., Dolnik, Olga, Dye, John M., Enterlein, Sven, Fenimore, Paul W., Formenty, Pierre, Freiberg, Alexander N., Garry, Robert F., Garza, Nicole L., Gire, Stephen K., Gonzalez, Jean-Paul, Griffiths, Anthony, Happi, Christian T., Hensley, Lisa E., Herbert, Andrew S., Hevey, Michael C., Hoenen, Thomas, Honko, Anna N., Ignatyev, Georgy M., Jahrling, Peter B., Johnson, Joshua C., Johnson, Karl M., Kindrachuk, Jason, Klenk, Hans-Dieter, Gary Kobinger, Gary Kobinger, Kochel, Tadeusz J., Lackemeyer, Matthew G., Lackner, Daniel F., Leroy, Eric M., Lever, Mark S., Mühlberger, Elke, Netesov, Sergey V., Olinger, Gene G., Omilabu, Sunday A., Palacios, Gustavo, Panchal, Rekha G., Park, Daniel J., Patterson, Jean L., Paweska, Janusz T., Peters, Clarence J., Pettitt, James, Pitt, Louise, Radoshitzky, Sheli R., Ryabchikova, Elena I., Saphire, Erica Ollmann, Sabeti, Pardis C., Sealfon, Rachel, Shestopalov, Aleksandr M., Smither, Sophie J., Sullivan, Nancy J., Swanepoel, Robert, Takada, Ayato, Towner, Jonathan S., van der Groen, Guido, Volchkov, Viktor E., Volchkova, Valentina A., Wahl-Jensen, Victoria, Warren, Travis K., Warfield, Kelly L., Weidmann, Manfred and Nichol, Stuart T. (2014) Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names. Viruses, 6 9: 3663-3682. doi:10.3390/v6093663


Author Kuhn, Jens H.
Andersen, Kristian G.
Bào, Yīmíng
Bavari, Sina
Becker, Stephan
Bennett, Richard S.
Bergman, Nicholas H.
Blinkova, Olga
Bradfute, Steven
Brister, J. Rodney
Bukreyev, Alexander
Chandran, Kartik
Chepurnov, Alexander A.
Davey, Robert A.
Dietzgen, Ralf G.
Doggett, Norman A.
Dolnik, Olga
Dye, John M.
Enterlein, Sven
Fenimore, Paul W.
Formenty, Pierre
Freiberg, Alexander N.
Garry, Robert F.
Garza, Nicole L.
Gire, Stephen K.
Gonzalez, Jean-Paul
Griffiths, Anthony
Happi, Christian T.
Hensley, Lisa E.
Herbert, Andrew S.
Hevey, Michael C.
Hoenen, Thomas
Honko, Anna N.
Ignatyev, Georgy M.
Jahrling, Peter B.
Johnson, Joshua C.
Johnson, Karl M.
Kindrachuk, Jason
Klenk, Hans-Dieter
Gary Kobinger, Gary Kobinger
Kochel, Tadeusz J.
Lackemeyer, Matthew G.
Lackner, Daniel F.
Leroy, Eric M.
Lever, Mark S.
Mühlberger, Elke
Netesov, Sergey V.
Olinger, Gene G.
Omilabu, Sunday A.
Palacios, Gustavo
Panchal, Rekha G.
Park, Daniel J.
Patterson, Jean L.
Paweska, Janusz T.
Peters, Clarence J.
Pettitt, James
Pitt, Louise
Radoshitzky, Sheli R.
Ryabchikova, Elena I.
Saphire, Erica Ollmann
Sabeti, Pardis C.
Sealfon, Rachel
Shestopalov, Aleksandr M.
Smither, Sophie J.
Sullivan, Nancy J.
Swanepoel, Robert
Takada, Ayato
Towner, Jonathan S.
van der Groen, Guido
Volchkov, Viktor E.
Volchkova, Valentina A.
Wahl-Jensen, Victoria
Warren, Travis K.
Warfield, Kelly L.
Weidmann, Manfred
Nichol, Stuart T.
Title Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names
Journal name Viruses   Check publisher's open access policy
ISSN 1999-4915
Publication date 2014-09-26
Sub-type Critical review of research, literature review, critical commentary
DOI 10.3390/v6093663
Open Access Status DOI
Volume 6
Issue 9
Start page 3663
End page 3682
Total pages 20
Place of publication Basel, Switzerland
Publisher M D P I
Collection year 2015
Language eng
Formatted abstract
Sequence determination of complete or coding-complete genomes of viruses is becoming common practice for supporting the work of epidemiologists, ecologists, virologists, and taxonomists. Sequencing duration and costs are rapidly decreasing, sequencing hardware is under modification for use by non-experts, and software is constantly being improved to simplify sequence data management and analysis. Thus, analysis of virus disease outbreaks on the molecular level is now feasible, including characterization of the evolution of individual virus populations in single patients over time. The increasing accumulation of sequencing data creates a management problem for the curators of commonly used sequence databases and an entry retrieval problem for end users. Therefore, utilizing the data to their fullest potential will require setting nomenclature and annotation standards for virus isolates and associated genomic sequences. The National Center for Biotechnology Information’s (NCBI’s) RefSeq is a non-redundant, curated database for reference (or type) nucleotide sequence records that supplies source data to numerous other databases. Building on recently proposed templates for filovirus variant naming [<virus name> (<strain>)/<isolation host-suffix>/<country of sampling>/<year of sampling>/<genetic variant designation>-<isolate designation>], we report consensus decisions from a majority of past and currently active filovirus experts on the eight filovirus type variants and isolates to be represented in RefSeq, their final designations, and their associated sequences.
Keyword Bundibugyo virus
cDNA clone
Cuevavirus
Ebola
Ebola virus
Ebolavirus
Filovirid
Filoviridae
Filovirus
Genome annotation
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Critical review of research, literature review, critical commentary
Collections: Queensland Alliance for Agriculture and Food Innovation
Official 2015 Collection
School of Chemistry and Molecular Biosciences
 
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Citation counts: TR Web of Science Citation Count  Cited 19 times in Thomson Reuters Web of Science Article | Citations
Scopus Citation Count Cited 21 times in Scopus Article | Citations
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Created: Thu, 19 Mar 2015, 11:53:07 EST by Associate Professor Ralf Dietzgen on behalf of Qld Alliance for Agriculture and Food Innovation