Calculating statistical power in Mendelian randomization studies

Brion, Marie-Jo A., Shakhbazov, Konstantin and Visscher, Peter M. (2013) Calculating statistical power in Mendelian randomization studies. International Journal of Epidemiology, 42 5: 1497-1501. doi:10.1093/ije/dyt179

Author Brion, Marie-Jo A.
Shakhbazov, Konstantin
Visscher, Peter M.
Title Calculating statistical power in Mendelian randomization studies
Journal name International Journal of Epidemiology   Check publisher's open access policy
ISSN 0300-5771
Publication date 2013
Year available 2013
Sub-type Article (original research)
DOI 10.1093/ije/dyt179
Open Access Status DOI
Volume 42
Issue 5
Start page 1497
End page 1501
Total pages 5
Place of publication Oxford, United Kingdom
Publisher Oxford University Press
Collection year 2014
Language eng
Subject 2713 Epidemiology
Abstract In Mendelian randomization (MR) studies, where genetic variants are used as proxy measures for an exposure trait of interest, obtaining adequate statistical power is frequently a concern due to the small amount of variation in a phenotypic trait that is typically explained by genetic variants. A range of power estimates based on simulations and specific parameters for two-stage least squares (2SLS) MR analyses based on continuous variables has previously been published. However there are presently no specific equations or software tools one can implement for calculating power of a given MR study. Using asymptotic theory, we show that in the case of continuous variables and a single instrument, for example a single-nucleotide polymorphism (SNP) or multiple SNP predictor, statistical power for a fixed sample size is a function of two parameters: the proportion of variation in the exposure variable explained by the genetic predictor and the true causal association etween the exposure and outcome variable. We demonstrate that power for 2SLS MR can be derived using the non-centrality parameter (NCP) of the statistical test that is employed to test whether the 2SLS regression coefficient is zero. We show that the previously published power estimates from simulations can be represented theoretically using this NCP-based approach, with similar estimates observed when the simulation-based estimates are compared with our NCP-based approach. General equations for calculating statistical power for 2SLS MR using the NCP are provided in this note, and we implement the calculations in a web-based application.
Keyword Instrumental variable
Mendelian randomization
Non centrality parameter
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: Queensland Brain Institute Publications
Official 2014 Collection
UQ Diamantina Institute Publications
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Citation counts: TR Web of Science Citation Count  Cited 29 times in Thomson Reuters Web of Science Article | Citations
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