Stemformatics is a collaboration between the stem cell and bioinformatics communities. The project was motivated by the plethora of exciting cell models (human and mouse) in the public and private domains, and the realisation that for many biologists these were mostly inaccessible. Our portal provides a means to find and visualise interesting genes in these exemplar stem cell datasets.
Stemformatics Project Manager Main Stemformatics Data Processor
Stemformatics Normalised Datasets and UCSC tracks
The Stemformatics portal provides access to a series of public experiments describing mouse and human stem cells and how they differentiate to become mature cells, tissues and organs.
Data from leading stem cell laboratories has been made available in a format that is easy to search, easy to visualise and easy to export. These normalised public datasets are uploaded to the Stemformatics portal. They include probe mappings, raw data mappings, and annotations of samples.
Contact email address: firstname.lastname@example.org Key citation for use of Stemformatics datasets: Wells CA et al (2013): Stemformatics: Visualisation and sharing of stem cell gene expression. Stem Cell Research, 10 (3), 387-395, doi: http://dx.doi.org/10.1016/j.scr.2012.12.003