QTLNetworkR: an interactive R package for QTL visualization

Zheng, Wen-jun, Yang, Jian and Zhu, Jun (2010) QTLNetworkR: an interactive R package for QTL visualization. Journal of Zhejiang University-Science B, 11 7: 512-515. doi:10.1631/jzus.B0900384


Author Zheng, Wen-jun
Yang, Jian
Zhu, Jun
Title QTLNetworkR: an interactive R package for QTL visualization
Journal name Journal of Zhejiang University-Science B   Check publisher's open access policy
ISSN 1673-1581
1862-1783
Publication date 2010-07
Year available 2010
Sub-type Article (original research)
DOI 10.1631/jzus.B0900384
Open Access Status
Volume 11
Issue 7
Start page 512
End page 515
Total pages 4
Place of publication Zhejiang, China
Publisher Zheijiang University Press
Language eng
Formatted abstract
QTLNetworkR is an R package that aims to provide a user-friendly and platform-independent tool to visualize quantitative trait loci (QTL) mapping results. The graphical functions of the QTLNetworkR are based upon lattice and grid packages, and the graphical user interface (GUI) of the QTLNetworkR is built upon RGtk2 and gWidgetsRGtk2 packages. Six functions are designed to help visualize marker interval, putative QTL, QTL-by-environment interactions, marker interval interactions, epistasis, and the predicted genetic architecture of complex traits. It is especially helpful in profiling results for multiple traits at multiple environments. The current version of QTLNetworkR is able to accept QTL mapping results from QTLNetwork, and it is ready for possible extensions to import results from some other QTL mapping software packages. In addition, we presented a QTL mapping result in rice (Oryza sativa) as an example to describe the features of QTLNetworkR.
Keyword Visualization
Quantitative trait loci (QTL)
QTL mapping
R package
QTLNetworkR
Q-Index Code C1
Q-Index Status Provisional Code
Institutional Status Non-UQ

Document type: Journal Article
Sub-type: Article (original research)
Collection: Queensland Brain Institute Publications
 
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