Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (=HR1)

Mavromatis, Konstantinos, Chertkov, Olga, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Tice, Hope, Del Rio, Tijana Glavina, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Bruce, David, Goodwin, Lynne A., Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Brambilla, Evelyne-Marie, Rohde, Manfred, Spring, Stefan, Goeker, Markus, Detter, John C., Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter and Woyke, Tanja (2012) Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (=HR1). Standards in Genomic Sciences, 6 2: 210-219. doi:10.4056/sigs.2816096

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Author Mavromatis, Konstantinos
Chertkov, Olga
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Bruce, David
Goodwin, Lynne A.
Pitluck, Sam
Huntemann, Marcel
Liolios, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Spring, Stefan
Goeker, Markus
Detter, John C.
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Woyke, Tanja
Title Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (=HR1)
Formatted title
Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (=HR1)
Journal name Standards in Genomic Sciences   Check publisher's open access policy
ISSN 1944-3277
Publication date 2012
Year available 2012
Sub-type Article (original research)
DOI 10.4056/sigs.2816096
Open Access Status DOI
Volume 6
Issue 2
Start page 210
End page 219
Total pages 10
Place of publication East lansing, MI, United States
Publisher Michigan State University Genomic Standards Consortium
Collection year 2013
Language eng
Formatted abstract
Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class ‘Sphingobacteria’ that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via ‘ixotrophy’. S. grandis strain Sa g1 was isolated from decaying crab carapace in France and was selected for genome sequencing because of its isolated location in the tree of life. Only one type strain genome has been published so far from the Saprospiraceae, while the sequence of strain Sa g1 represents the second genome to be published from a non-type strain of S. grandis. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,495,250 bp long Improved-High-Quality draft of the genome with its 3,536 pro-tein-coding and 62 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Keyword Strictly aerobic
Gliding
Gram-negative
Mesophilic
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: Official 2013 Collection
School of Chemistry and Molecular Biosciences
 
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