Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T))

Kappler, Ulrike, Davenport, Karen, Beatson, Scott, Lucas, Susan, Lapidus, Alla, Copeland, Alex, Berry, Kerrie W., Del Rio, Tijana Glavina, Hammon, Nancy, Dalin, Eileen, Tice, Hope, Pitluck, Sam, Richardson, Paul, Bruce, David, Goodwin, Lynne A., Han, Cliff, Tapia, Roxanne, Detter, John C., Chang, Yun-juan, Jeffries, Cynthia D., Land, Miriam, Hauser, Loren, Kyrpides, Nikos C., Goeker, Markus, Ivanova, Natalia, Klenk, Hans-Peter and Woyke, Tanja (2012) Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)). Standards in Genomic Sciences, 7 1: 44-58. doi:10.4056/sigs.3006378


Author Kappler, Ulrike
Davenport, Karen
Beatson, Scott
Lucas, Susan
Lapidus, Alla
Copeland, Alex
Berry, Kerrie W.
Del Rio, Tijana Glavina
Hammon, Nancy
Dalin, Eileen
Tice, Hope
Pitluck, Sam
Richardson, Paul
Bruce, David
Goodwin, Lynne A.
Han, Cliff
Tapia, Roxanne
Detter, John C.
Chang, Yun-juan
Jeffries, Cynthia D.
Land, Miriam
Hauser, Loren
Kyrpides, Nikos C.
Goeker, Markus
Ivanova, Natalia
Klenk, Hans-Peter
Woyke, Tanja
Title Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T))
Journal name Standards in Genomic Sciences   Check publisher's open access policy
ISSN 1944-3277
Publication date 2012-10
Year available 2012
Sub-type Article (original research)
DOI 10.4056/sigs.3006378
Open Access Status DOI
Volume 7
Issue 1
Start page 44
End page 58
Total pages 15
Place of publication East lansing, MI., United States
Publisher Michigan State University Genomic Standards Consortium
Collection year 2013
Language eng
Formatted abstract
Starkeya novella (Starkey 1934) Kelly et al. 2000 is a member of the family Xanthobacteraceae in the order 'Rhizobiales', which is thus far poorly characterized at the genome level. Cultures from this spe-cies are most interesting due to their facultatively chemolithoautotrophic lifestyle, which allows them to both consume carbon dioxide and to produce it. This feature makes S. novella an interesting model or-ganism for studying the genomic basis of regulatory networks required for the switch between con-sumption and production of carbon dioxide, a key component of the global carbon cycle. In addition, S. novella is of interest for its ability to grow on various inorganic sulfur compounds and several C1-compounds such as methanol. Besides Azorhizobium caulinodans, S. novella is only the second spe-cies in the family Xanthobacteraceae with a completely sequenced genome of a type strain. The cur-rent taxonomic classification of this group is in significant conflict with the 16S rRNA data. The ge-nomic data indicate that the physiological capabilities of the organism might have been underestimat-ed. The 4,765,023 bp long chromosome with its 4,511 protein-coding and 52 RNA genes was se-quenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008.
Keyword Strictly aerobic
Facultatively chemoautotrophic
Methylotrophic and heterotrophic
Gramnegative
Rodshaped
Nonmotile
Soil bacterium
Xanthobacteraceae
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: Official 2013 Collection
School of Chemistry and Molecular Biosciences
 
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