Gene expression in the developing aleurone and starchy endosperm of wheat

Gillies, Susan A., Futardo, Agnelo and Henry, Robert J. (2012) Gene expression in the developing aleurone and starchy endosperm of wheat. Plant Biotechnology Journal, 10 6: 668-679. doi:10.1111/j.1467-7652.2012.00705.x

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Author Gillies, Susan A.
Futardo, Agnelo
Henry, Robert J.
Title Gene expression in the developing aleurone and starchy endosperm of wheat
Journal name Plant Biotechnology Journal   Check publisher's open access policy
ISSN 1467-7644
Publication date 2012-08
Sub-type Article (original research)
DOI 10.1111/j.1467-7652.2012.00705.x
Open Access Status DOI
Volume 10
Issue 6
Start page 668
End page 679
Total pages 12
Place of publication Oxford, United Kingdom
Publisher Wiley-Blackwell
Collection year 2013
Language eng
Abstract Wheat is a critical food source globally. Food security is an increasing concern; current production levels are not expected to keep pace with global demand. New technologies have provided a vast array of wheat genetic data; however, best use of this data requires placing it within a framework in which the various genes, pathways and interactions can be examined. Here we present the first systematic comparison of the global transcriptomes of the aleurone and starchy endosperm of the developing wheat seed (Triticum aestivum), at time points critical to the development of the aleurone layer; 6-, 9- and 14-day post-anthesis. Illumina sequencing gave 25-55 million sequence reads per tissue, of the trimmed reads, 70%-81% mapped to reference expressed sequence transcripts. Transcript abundance was analysed by performing RNA-Seq normalization to generate reads per kilobase of exon model per million mapped reads values, and these were used in comparative analyses between the tissues at each time point using Kal's Z-test. This identified 9414-13 202 highly differentially expressed transcripts that were categorized on the basis of tissue and time point expression and functionally analysed revealing two very distinct tissues. The results demonstrate the fundamental biological reprogramming of the two major biologically and economically significant tissues of the wheat seed over this time course. Understanding these changes in gene expression profiles is essential to mining the potential these tissues hold for human nutrition and contributing to the systems biology of this important crop plant.
Keyword Triticum aestivum
Next generation sequencing
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ
Additional Notes Article first published online: 5 June 2012.

Document type: Journal Article
Sub-type: Article (original research)
Collections: Queensland Alliance for Agriculture and Food Innovation
Official 2013 Collection
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Citation counts: TR Web of Science Citation Count  Cited 24 times in Thomson Reuters Web of Science Article | Citations
Scopus Citation Count Cited 30 times in Scopus Article | Citations
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Created: Sun, 05 Aug 2012, 00:02:57 EST by System User on behalf of Qld Alliance for Agriculture and Food Innovation