Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2(T)) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Ra

Klenk, Hans-Peter, Lapidus, Alla, Chertkov, Olga, Copeland, Alex, Del Rio, Tijana Glavina, Nolan, Matt, Lucas, Susan, Chen, Feng, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Pati, Amrita, Ivanova, Natalia, Mavromatis, Konstantinos, Daum, Chris, Chen, Amy, Palaniappan, Krishna, Chang, Yun-juan, Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Detter, John C., Rohde, Manfred, Abt, Birte, Pukall, Rüdiger, Göker, Markus, Bristow, James, Markowitz, Victor, Hugenholtz, Philip and Eisen, Jonathan A. (2011) Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2(T)) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Ra. Standards in Genomic Sciences, 5 1: 121-134. doi:10.4056/sigs.2144922

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Author Klenk, Hans-Peter
Lapidus, Alla
Chertkov, Olga
Copeland, Alex
Del Rio, Tijana Glavina
Nolan, Matt
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Pati, Amrita
Ivanova, Natalia
Mavromatis, Konstantinos
Daum, Chris
Chen, Amy
Palaniappan, Krishna
Chang, Yun-juan
Land, Miriam
Hauser, Loren
Jeffries, Cynthia D.
Detter, John C.
Rohde, Manfred
Abt, Birte
Pukall, Rüdiger
Göker, Markus
Bristow, James
Markowitz, Victor
Hugenholtz, Philip
Eisen, Jonathan A.
Title Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2(T)) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Ra
Formatted title
Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010
Journal name Standards in Genomic Sciences   Check publisher's open access policy
ISSN 1944-3277
Publication date 2011-01-01
Year available 2011
Sub-type Article (original research)
DOI 10.4056/sigs.2144922
Open Access Status DOI
Volume 5
Issue 1
Start page 121
End page 134
Total pages 14
Editor George M. Garrity
Place of publication East Lansing, MI, U.S.A.
Publisher Michigan State University
Collection year 2012
Language eng
Formatted abstract
Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S sequence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2T as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analysis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassification as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Keyword Hydrogen-oxidizing
Aerobe
Facultative chemolithoautotroph
Thermoacidophile
Free-living
Solfatara
Spore-forming
Bacillaceae
GEBA
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ
Additional Notes Article first available online 23 September 2011.

Document type: Journal Article
Sub-type: Article (original research)
Collections: Official 2012 Collection
School of Chemistry and Molecular Biosciences
 
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Created: Wed, 28 Mar 2012, 20:59:11 EST by Lucy O'Brien on behalf of School of Chemistry & Molecular Biosciences