Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR(T))

Han, Cliffe, Mwirichia, Romano, Chertkov, Olga, Held, Brittany, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Hammon, Nancy, Deshpande, Shweta, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Ivanova, Natalia, Pagani, Ioanna, Mavromatis, Konstantinos, Ovchinikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Brambilla, Evelyne, Rohde, Manfred, Spring, Stefan, Sikorski, Johannes, Goker, Markus, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter and Detter, John C. (2011) Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR(T)). Standards in Genomic Sciences, 4 3: 371-380. doi:10.4056/sigs.2004684

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Author Han, Cliffe
Mwirichia, Romano
Chertkov, Olga
Held, Brittany
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Hammon, Nancy
Deshpande, Shweta
Cheng, Jan-Fang
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Huntemann, Marcel
Liolios, Konstantinos
Ivanova, Natalia
Pagani, Ioanna
Mavromatis, Konstantinos
Ovchinikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Brambilla, Evelyne
Rohde, Manfred
Spring, Stefan
Sikorski, Johannes
Goker, Markus
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Detter, John C.
Title Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR(T))
Formatted title
Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)


Journal name Standards in Genomic Sciences   Check publisher's open access policy
ISSN 1944-3277
Publication date 2011
Sub-type Article (original research)
DOI 10.4056/sigs.2004684
Open Access Status DOI
Volume 4
Issue 3
Start page 371
End page 380
Total pages 10
Place of publication Michigan State University * Genomic Standards Consortium
Publisher East lansing, M, United States
Collection year 2012
Language eng
Abstract Syntrophobotulus glycolicus Friedrich et al. 1996 is currently the only member of the genus Syntrophobotulus within the family Peptococcaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of tree of life. When grown in pure culture with glyoxylate as carbon source the organism utilizes glyoxylate through fermentative oxidation, whereas, when grown in syntrophic co-culture with homoacetogenic or methanogenic bacteria, it is able to oxidize glycolate to carbon dioxide and hydrogen. No other organic or inorganic carbon source is utilized by S. glycolicus. The subdivision of the family Peptococcaceae into genera does not reflect the natural relationships, particularly regarding the genera most closely related to Syntrophobotulus. Both Desulfotomaculum and Pelotomaculum are paraphyletic assemblages, and the taxonomic classification is in significant conflict with the 16S rRNA data. S. glycolicus is already the ninth member of the family Peptococcaceae with a completely sequenced and publicly available genome. The 3,406,739 bp long genome with its 3,370 protein-coding and 69 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Keyword Glycolate-oxidizing
Gram-negative with Gram-positive cell wall structure
Strictly anaerobic
Chemotrophic
Mesophilic
Non-motile
Rod-shaped
Spore-forming
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: Official 2012 Collection
School of Chemistry and Molecular Biosciences
 
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