The UCSC Genome Browser database : Update 2010

Rhead, Brook, Karolchik, Donna, Kuhn, Robert M., Hinrichs, Angie S., Zweig, Ann S., Fujita, Pauline A., Diekhans, Mark, Smith, Kayla E., Rosenbloom, Kate R., Raney, Brian J., Pohl, Andy, Pheasant, Michael, Meyer, Laurence R., Learned, Katrina, Hsu, Fan, Hillman-Jackson, Jennifer, Harte, Rachel A., Giardine, Belinda, Dreszer, Timothy R., Clawson, Hiram, Barber, Gait P., Haussler, David and Kent, W. James (2010) The UCSC Genome Browser database : Update 2010. Nucleic Acids Research, 38 Supp.1: D613-D619. doi:10.1093/nar/gkp939

Author Rhead, Brook
Karolchik, Donna
Kuhn, Robert M.
Hinrichs, Angie S.
Zweig, Ann S.
Fujita, Pauline A.
Diekhans, Mark
Smith, Kayla E.
Rosenbloom, Kate R.
Raney, Brian J.
Pohl, Andy
Pheasant, Michael
Meyer, Laurence R.
Learned, Katrina
Hsu, Fan
Hillman-Jackson, Jennifer
Harte, Rachel A.
Giardine, Belinda
Dreszer, Timothy R.
Clawson, Hiram
Barber, Gait P.
Haussler, David
Kent, W. James
Title The UCSC Genome Browser database : Update 2010
Journal name Nucleic Acids Research   Check publisher's open access policy
ISSN 0305-1048
Publication date 2010-01
Sub-type Article (original research)
DOI 10.1093/nar/gkp939
Open Access Status DOI
Volume 38
Issue Supp.1
Start page D613
End page D619
Total pages 7
Place of publication Oxford, United Kingdom
Publisher Oxford University Press
Language eng
Abstract The University of California, Santa Cruz (UCSC)Genome Browser website (http://genome.ucsc .edu/) provides a large database of publicly available sequence and annotation data along with an integrated tool set for examining and comparing the genomes of organisms, aligning sequence to genomes, and displaying and sharing users’ own annotation data. As of September 2009, genomic sequence and a basic set of annotation ‘tracks’ are provided for 47 organisms, including 14 mammals, 10 non-mammal vertebrates, 3 invertebrate deuterostomes, 13 insects, 6 worms and a yeast. New data highlights this year include an updated human genome browser, a 44-species multiple sequence alignment track, improved variation and phenotype tracks and 16 new genome-wide ENCODE tracks. New features include dragand-zoom navigation, a Wiki track for user-added annotations, new custom track formats for large datasets (bigBed and bigWig), a new multiple alignment output tool, links to variation and protein structure tools, in silico PCR utility enhancements, and improved track configuration tools.
Keyword Protein Data-Bank
Q-Index Code C1
Q-Index Status Provisional Code
Institutional Status Non-UQ

Document type: Journal Article
Sub-type: Article (original research)
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