Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))

Zeytun, Ahmet, Sikorski, Johannes, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Han, James, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Ngatchou-Djao, Olivier D., Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Han, Cliff, Detter, John C., Übler, Susanne, Rohde, Manfred, Tindall, Brian J., Göker, Markus, Wirth, Reinhard, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Klenk, Hans-Peter and Kyrpides, Nikos C. (2011) Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)). Standards in Genomic Sciences, 4 2: 131-143. doi:10.4056/sigs.1463589

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Author Zeytun, Ahmet
Sikorski, Johannes
Nolan, Matt
Lapidus, Alla
Lucas, Susan
Han, James
Tice, Hope
Cheng, Jan-Fang
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Ngatchou-Djao, Olivier D.
Land, Miriam
Hauser, Loren
Jeffries, Cynthia D.
Han, Cliff
Detter, John C.
Übler, Susanne
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Wirth, Reinhard
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Title Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))
Formatted title
Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6T)
Journal name Standards in Genomic Sciences   Check publisher's open access policy
ISSN 1944-3277
Publication date 2011-04-29
Sub-type Article (original research)
DOI 10.4056/sigs.1463589
Open Access Status DOI
Volume 4
Issue 2
Start page 131
End page 143
Total pages 13
Place of publication East Lansing, MI, U.S.A.
Publisher Genomic Standards Consortium, Michigan State University
Collection year 2012
Language eng
Formatted abstract
Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6T is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO2 via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain derived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Keyword Strictly thermophilic
Obligately chemolithoautotrophic
Gram-negative
Aerobic
Hydrogen-oxidizing
Nonmotile
Non sporeforming
Rod shaped
Aquificaceae
Aquificae
GE-BA
Tricarboxylic-acid cycle
Oxidizing bacterium
Sp-nov
Genus hydrogenobacter
Elemental sulfur
Aquificales
Archaea
Growth
2-Methylthio-1,4-naphthoquinone
Purification
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: Official 2012 Collection
School of Chemistry and Molecular Biosciences
 
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