Complete genome sequence of Aminobacterium colombiense type strain (ALA-1)

Chertkov, Olga, Sikorski, Johannes, Brambilla, Evelyne, Lapidus, Alla, Copeland, Alex, Glavina Del Rio, Tijana, Nolan, Matt, Lucas, Susan, Tice, Hope, Cheng, Jan-Fang, Han, Cliff, Detter, John C., Bruce, David, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D., Spring, Stefan, Rohde, Manfred, Goker, Markus, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C. and Klenk, Hans-Peter (2010) Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). Standards in Genomic Sciences, 2 3: 280-289. doi:10.4056/sigs.902116

Author Chertkov, Olga
Sikorski, Johannes
Brambilla, Evelyne
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Detter, John C.
Bruce, David
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Spring, Stefan
Rohde, Manfred
Goker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Title Complete genome sequence of Aminobacterium colombiense type strain (ALA-1)
Formatted title
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1T)
Journal name Standards in Genomic Sciences   Check publisher's open access policy
ISSN 1944-3277
Publication date 2010-06-30
Sub-type Article (original research)
DOI 10.4056/sigs.902116
Open Access Status DOI
Volume 2
Issue 3
Start page 280
End page 289
Total pages 10
Place of publication United States
Publisher Michigan State University * Genomic Standards Consortium
Collection year 2011
Language eng
Abstract Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacte-rium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a li-mited range of amino acids but not carbohydrates. Here we describe the features of this or-ganism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member of the family Synergistaceae and the first genome sequence of a member of the genus Aminobacterium. The 1,980,592 bp long genome with its 1,914 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Keyword Strictly anaerobic
Fermentation of amino acids
Gram-negative staining
Syntrophic organism
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status Non-UQ
Additional Notes Print publication date: 30 June, 2010.

Document type: Journal Article
Sub-type: Article (original research)
Collections: Non HERDC
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Created: Thu, 24 Mar 2011, 08:53:19 EST by Susan Allen on behalf of Institute for Molecular Bioscience