WebFOG: A web tool to map genomic features onto genes

Tyagi, Sonika, Stark, Mitchell S., Hayward, Nicholas K., Whiteman, David C. and Nancarrow, Derek J. (2010) WebFOG: A web tool to map genomic features onto genes. Biochemical and Biophysical Research Communications, 401 3: 447-450. doi:10.1016/j.bbrc.2010.09.077

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Author Tyagi, Sonika
Stark, Mitchell S.
Hayward, Nicholas K.
Whiteman, David C.
Nancarrow, Derek J.
Title WebFOG: A web tool to map genomic features onto genes
Journal name Biochemical and Biophysical Research Communications   Check publisher's open access policy
ISSN 0006-291X
1090-2104
Publication date 2010-10-22
Sub-type Article (original research)
DOI 10.1016/j.bbrc.2010.09.077
Volume 401
Issue 3
Start page 447
End page 450
Total pages 4
Place of publication Maryland Heights, MO, United States
Publisher Academic Press
Collection year 2011
Language eng
Abstract A large number of new genomic features are being discovered using high throughput techniques. The next challenge is to automatically map them to the reference genome for further analysis and functional annotation. We have developed a tool that can be used to map important genomic features to the latest version of the human genome and also to annotate new features. These genomic features could be of many different source types, including miRNAs, microarray primers or probes, Chip-on-Chip data, CpG islands and SNPs to name a few. A standalone version and web interface for the tool can be accessed through: http://populationhealth.qimr.edu.au/cgi-bin/webFOG/index.cgi. The project details and source code is also available at http://www.bioinformatics.org/webfog. © 2010 Elsevier Inc.
Keyword MiRNA mapping
SNP mapping
Primer mapping
Genomic feature annotation
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ

Document type: Journal Article
Sub-type: Article (original research)
Collections: Official 2011 Collection
ERA 2012 Admin Only
School of Medicine Publications
 
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Created: Wed, 23 Mar 2011, 13:18:44 EST by Lisa Hennell on behalf of Medicine - Royal Brisbane and Women's Hospital