LncRNAdb: a reference database for long noncoding RNAs

Amaral, Paulo P., Clark, Michael B., Gascoigne, Dennis K., Dinger, Marcel E. and Mattick, John S. (2011) LncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Research, 39 Supplement 1: D146-D151. doi:10.1093/nar/gkq1138

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Author Amaral, Paulo P.
Clark, Michael B.
Gascoigne, Dennis K.
Dinger, Marcel E.
Mattick, John S.
Title LncRNAdb: a reference database for long noncoding RNAs
Journal name Nucleic Acids Research   Check publisher's open access policy
ISSN 0305-1048
Publication date 2011-01
Year available 2010
Sub-type Article (original research)
DOI 10.1093/nar/gkq1138
Open Access Status DOI
Volume 39
Issue Supplement 1
Start page D146
End page D151
Total pages 6
Place of publication Oxford, United Kingdom
Publisher Oxford University Press
Collection year 2012
Language eng
Formatted abstract
Large numbers of long RNAs with little or no protein-coding potential [long noncoding RNAs (lncRNAs)] are being identified in eukaryotes. In parallel, increasing data describing the expression profiles, molecular features and functions of individual lncRNAs in a variety of systems are accumulating. To enable the systematic compilation and updating of this information, we have developed a database (lncRNAdb) containing a comprehensive list of lncRNAs that have been shown to have, or to be associated with, biological functions in eukaryotes, as well as messenger RNAs that have regulatory roles. Each entry contains referenced information about the RNA, including sequences, structural information, genomic context, expression, subcellular localization, conservation, functional evidence and other relevant information. lncRNAdb can be searched by querying published RNA names and aliases, sequences, species and associated protein-coding genes, as well as terms contained in the annotations, such as the tissues in which the transcripts are expressed and associated diseases. In addition, lncRNAdb is linked to the UCSC Genome Browser for visualization and Noncoding RNA Expression Database (NRED) for expression information from a variety of sources. lncRNAdb provides a platform for the ongoing collation of the literature pertaining to lncRNAs and their association with other genomic elements.
Keyword Tumor-suppressor gene
Mammalian gene
Antisense RNA
Q-Index Code C1
Q-Index Status Confirmed Code
Institutional Status UQ
Additional Notes Published online: 25 November 2010. Special Issue: "Database issue".

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Created: Sun, 20 Mar 2011, 00:04:30 EST