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 Browse by Research Fields, Courses and Disciplines The Research Fields, Courses and Disciplines (Australian Standard Research Classification) is published by the Australian Bureau of Statistics (ABS catalogue number 1297.0) 1998. ABS data is used with permission from the Australian Bureau of Statistics -> 270000 Biological Sciences -> 270200 Genetics -> 270208 Molecular Evolution :

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Moussalli, A., Hugall, A. F. and Moritz, C. (2005) A mitochondrial phylogeny of the rainforest skink genus Saproscincus, Wells and Wellington (1984). Molecular Phylogenetics And Evolution, 34 1: 190-202. doi:10.1016/j.ympev.2004.08.022 124   30 Cited 30 times in Scopus30 0
Guyatt, Kimberley J., Twin, Jimmy, Davis, Patricia, Holmes, Edward C., Smith, Greg A., Smith, Ina L., Mackenzie, John S. and Young, Peter L. (2003) A molecular epidemiological study of Australian bat lyssavirus. Journal of General Virology, 84 2: 485-496. doi:10.1099/vir.0.18652-0 147   47 Cited 48 times in Scopus48 0
Crampton, AL, Baxter, CD and Barker, SC (1999) A new family of cytochrome P450 genes (CYP41) from the cattle tick, Boophilus microplus. Insect Biochemistry and Molecular Biology, 29 9: 829-834. doi:10.1016/S0965-1748(99)00061-2 50   3 Cited 4 times in Scopus4 0
Sellars, M. J., Lyons, R. E., Grewe, P. M., Vuocolo, T., Leeton, L., Coman, G. J., Degnan, B. M. and Preston, N. P. (2007) A PL10 vasa-like gene in the Kuruma shrimp Marsupenaeus japonicus (Bate) is expressed during development in the adult gonad. Marine Biotechnology, 9 3: 377-387. doi:10.1007/s10126-007-6118-9 111   15 Cited 14 times in Scopus14 0
Sakarya, O., Armstrong, K. A., Adamska, M. A., Adamski, M. R., Wang, I-F., Tidor, B., Degnan, B. M., Oakley, T. H. and Kosik, K. S. (2007) A post-synaptic scaffold at the origin of the animal kingdom. PLoS ONE, 2 6: 1-9. doi:10.1371/journal.pone.0000506 135   Cited 117 times in Scopus117 48
Jackson, Daniel J., McDougall, Carmel, Green, Kathryn, Simpson, Fiona, Worheide, Gert and Degnan, Bernard M. (2006) A rapidly evolving secretome builds and patterns a sea shell. BMC Biology, 4 40: 40-49. doi:10.1186/1741-7007-4-40 91   68 Cited 70 times in Scopus70 6
Murrell, A., Campell, N. J. H. and Barker, S. C. (2001) A total-evidence phylogeny of ticks provides insights into the evolution of life cycles and biogeography. Molecular Phylogenetics And Evolution, 21 2: 244-258. doi:10.1006/mpev.2001.1018 102   50 Cited 49 times in Scopus49 0
Beiko, Robert G., Chan, Cheong Xin and Ragan, Mark A. (2005) A Word-Oriented Approach to Alignment Validation. Bioinformatics, 21 10: 2230-2239. doi:10.1093/bioinformatics/bti335 219 190 10 Cited 9 times in Scopus9 0
Mar, Jessica C., Harlow, Timothy J . and Ragan, Mark A. (2005) Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation. BMC Evolutionary Biology, 5 8.1-8.20. doi:10.1186/1471-2148-5-8 122   23 Cited 23 times in Scopus23 0
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2004). Benchmarking the Detection and Analysis of Recombination. In: Proceedings of the 12th International Conference Intelligent Systems for Molecular Biology (ISMB) and 3rd European Conference in Computational Biology (ECCB). 12th International Conference Intelligent Systems for Molecular Biology (ISMB) and 3rd European Conference in Computational Biology (ECCB), Glasgow, UK, (160-160). 31 July - 4 August 2004. 193 364
Mattick, John S. (2003) Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. Bioessays, 25 10: 930-939. doi:10.1002/bies.10332 177   292 Cited 317 times in Scopus317 3
Barclay, JL, Anderson, ST, Waters, MJ and Curlewis, JD (2007) Characterization of the SOCS3 Promoter Response to Prostaglandin E2 in T47D Cells. Molecular Endocrinology, 21 10: 2516-2528. doi:10.1210/me.2007-0030 84   16 Cited 16 times in Scopus16 0
Veitch, C., Gemmell, R. T. and Curlewis, J. D. (2006) Cloning and sequence analysis of pituitary prolactin cDNA from the northern brown bandicoot (Isoodon macrourus). General And Comparative Endocrinology, 146 3: 304-309. doi:10.1016/j.ygcen.2005.11.006 25   1 Cited 1 times in Scopus1 0
Saleh, S. M., Poidinger, M., Mackenzie, J. S., Broom, A. K., Lindsay, M. D. and Hall, R. A. (2003) Complete genomic sequence of the Australian south-west genotype of Sindbis virus: Comparisons with other Sindbis strains and identification of a unique deletion in the 3 '-untranslated region. Virus Genes, 26 3: 317-327. doi:10.1023/A:1024407516352 45   6 Cited 7 times in Scopus7 0
Keith, J. M., Adams, P., Stephen, S. and Mattick, J. S. (2008) Delineating slowly and rapidly evolving fractions of the Drosophila genome. Journal of Computational Biology, 15 4: 407-430. doi:10.1089/cmb.2007.0173 29   10 Cited 10 times in Scopus10 0
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2006) Detecting Recombination in Evolving Nucleotide Sequences. BMC Bioinformatics, 7 Article 412: 1-15. doi:10.1186/1471-2105-7-412 174 171 30 Cited 28 times in Scopus28 0
Degnan, B. M. and Morse, D. E. (1995) Developmental and morphogenetic gene regulation in Haliotis rufescens larvae at metamorphosis. American Zoologist, 35 4: 391-398. 163   49
Brownlie, J. C., Adamski, M., Slatko, B. and McGraw, E. A. (2007) Diversifying selection and host adaptation in two endosymbiont genomes. BMC Evolutionary Biology, 7 68: 1-12. doi:10.1186/1471-2148-7-68 61   15 Cited 13 times in Scopus13 1
Duggleby, RG (2006) Domain relationships in thiamine diphosphate-dependent enzymes. Accounts of Chemical Research, 39 8: 550-557. doi:10.1021/ar068022z 28   45 Cited 45 times in Scopus45 0
Gillam, Elizabeth M. J. (2005) Exploring the potential of xenobiotic-metabolising enzymes as biocatalysts: Evolving designer catalysts from polyfunctional cytochrome P450 enzymes. Clinical and Experimental Pharmacology and Physiology, 32 3: 147-152. doi:10.1111/j.1440-1681.2005.04165.x 60   19 Cited 21 times in Scopus21 0
Davies, WL, Cowing, JA, Carvalho, LS, Potter, IC, Trezise, AEO, Hunt, DM and Collin, SP (2007) Functional characterization, tuning, and regulation of visual pigment gene expression in an anadromous lamprey. Faseb Journal, 21 11: 2713-2724. doi:10.1096/fj.06-8057com 43   31 Cited 35 times in Scopus35 0
Larroux, C., Luke, G. N., Koopman, P., Rokhsar, D. S., Shimeld, S. M. and Degnan, B. M. (2008) Genesis and expansion of metazoan transcription factor gene classes. Molecular Biology and Evolution, 25 5: 980-996. doi:10.1093/molbev/msn047 44   119 Cited 121 times in Scopus121 1
Pattemore, J. A. and Aitken, E. A. B. (2000). Genetic variation among populations of Thielaviopsis basicola, the causal agent of Black Root Rot.. In: Cotton : meeting the challenge : Conference program : 10th Australian Cotton Conference. 10th Australian Cotton Conference, Brisbane, Australia, (499-505). 16 -18 August 2000. 67  
Charlebois, R.L., Beiko, R.G. and Ragan, M. A. (2004). Genome Phylogenies. In Hirt, R.P.; Horner and D.S. (Ed.), Organelles, Genomics and Eukaryote Phylogeny: An Evolutionary Synthesis in the Age of Genomics Series 68 ed. (pp. 189-206) Boca Raton Florida, USA: CRC Press:. 64  
Irwin, Darryl L. (2004). High throughput genetic analysis of limited numbers of cells PhD Thesis, Institute for Molecular Bioscience, The University of Queensland. 89 2
Shao, R. F., Campbell, N. J. H., Schmidt, E. R. and Barker, S. C. (2001) Increased rate of gene rearrangement in the mitochondrial genomes of three orders of hemipteroid insects. Molecular Biology and Evolution, 18 9: 1828-1832. 55   58
Taft, Ryan J. and Mattick, John S. (2003) Increasing biological complexity is positively correlated with the relative genome-wide expansion of non-protein-coding DNA sequences. Genome Biology, 5 1: 1-24. doi:10.1186/gb-2003-5-1-p1 101   0
Mattick, J. S. (2003). Introns and noncoding RNAs: The hidden layer of eukaryotic complexity. In Barciszewski, J; Erdmann and V A (Ed.), Noncoding RNAs: Molecular Biology and Molecular Medicine 1 ed. (pp. 11-32) Georgetown, TX, USA: Landes Bioscience. 50  
Scott, K. D., Lange, C. L., Scott, L. J. and Graham, G. C. (2004) Isolation and characterization of microsatellite loci from Helicoverpa armigera Hübner (Lepidoptera: Noctuidae). Molecular Ecology Notes, 4 2: 204-205. doi:10.1111/j.1471-8286.2004.00617.x 60   15 Cited 15 times in Scopus15 0
Croft, L., Lercher, M.J., Gagen, M. J. and Mattick, J. S. (2003) Is prokaryotic complexity limited by accelerated growth in regulatory overhead?. Genome Biology, 5 1-25. 71  
Daniels, P., Williams, D. and Mackenzie, J. S. (2002). Japanese encephalitis virus. In A. Morillo, K.-J. Yoon and J.J. Zimmerman (Ed.), Trends in Emerging Viral Infections of Swine 1st ed. (pp. 249-263) Iowa, USA: Iowa State Press. 28  
Stephen, S., Pheasant, M., Makunin, I. V. and Mattick, J. S. (2008) Large-scale appearance of ultraconserved elements in tetrapod genomes and slowdown of the molecular clock. Molecular Biology and evolution, 25 2: 402-408. doi:10.1093/molbev/msm268 32   49 Cited 53 times in Scopus53 0
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2008). Large-scale detection of recombination in nucleotide sequences. In: Atan, Mohd. K. A. and Krishnarajan, I. S., AIP Conference Proceedings: International Conference on Mathematical Biology 2007. International Conference on Mathematical Biology 2007, Putrajaya, Malaysia, (101-104). 4-6 September 2007. doi:10.1063/1.2883829 34   0 Cited 0 times in Scopus0 0
Sumner, J., Jessop, T., Paetkau, D. and Moritz, C. C. (2004) Limited effect of anthropogenic habitat fragmentation on molecular diversity in a rain forest skink, Gnypetoscincus queenslandiae. Molecular Ecology, 13 2: 259-269. doi:10.1046/j.1365-294X.2003.02056.x 75   36 Cited 40 times in Scopus40 0
Erpenbeck, D., Voigt, O., Adamski, M., Adamska, M., Hooper, J. N. A., Worheide, G. and Degnan, B. M. (2007) Mitochondrial diversity of early-branching metazoa is revealed by the complete mt genome of a Haplosclerid Demosponge. Molecular Biology and Evolution, 24 1: 19-22. doi:10.1093/molbev/msl154 59   38 Cited 38 times in Scopus38 0
Badruzsaufari, B. (2005). Molecular analysis of cross communication between signal transduction pathways during pathogen resistance response in arabidopsis thaliana PhD Thesis, School of Molecular and Microbial Sciences, The University of Queensland. 103 2
Bromham, Lindell (2002) Molecular clocks in reptiles: Life history influences rate of molecular evolution. Molecular Biology And Evolution, 19 3: 302-309. 121   65 Cited 75 times in Scopus75
Nahkuri, S., Taft, R. J., Korbie, D. J. and Mattick, J. S. (2008) Molecular evolution of the HBII-52 snoRNA Cluster. Journal of Molecular Biology, 381 4: 810-815. doi:10.1016/j.jmb.2008.06.057 25   11 Cited 9 times in Scopus9 0
Schoenberg, C. and Loh, W. K. W. (2005) Molecular identity of the unique symbiotic dinoflagellates found in the bioeroding demosponge Cliona oreintalis. Marine Ecology Progress Series, 299 157-166. doi:10.3354/meps299157 56   30 Cited 31 times in Scopus31 0
Jobson, Richard William (2003). Molecular phylogenetics and evolutionary processes in the carnivorous plant family Lentibulariaceae (Asteridae: Lamiales) PhD Thesis, School of Biological Sciences, The University of Queensland. 312 3
Nocillado, J. N., Chua, H., O'Brien, E. K., Guyatt, K. J., Carrick, F. N. and Elizur, A. (2004) Molecular tools for studying puberty in the grey mullet, Mugil cephalus: cloning of cDNAs that regulate reproductive function. Fish Physiology and Biochemistry, 28 1-4: 47-48. doi:10.1023/B:FISH.0000030473.61547.b0 62   2 Cited 2 times in Scopus2 0
Mattick, J. S. (2003). Noncoding RNAs: a regulatory role?. In Cooper and David (Ed.), Nature Encyclopedia of the Human Genome (pp. 1-10) UK: Nature Publishing Group, Macmillan Publishers Ltd.. 36  
Shao, R., Campbell, N. J. H. and Barker, S. C. (2001) Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera). Molecular Biology And Evolution, 18 5: 858-865. 133   104
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2004). Oh Father Where Art Thou? Comparing Different Ways of Finding Recombination Events. In: First ARC Centre in Bioinformatics Annual All Hands Meeting, The University of Queensland, (). 10-11 May, 2004. 258 65
Trezise, A. E. O. and Collin, S. P. (2005) Opsins: Evolution in waiting. Current Biology, 15 19: R794-R796. doi:10.1016/j.cub.2005.09.025 49   24 Cited 26 times in Scopus26 0
Simionato, E., Ledent, V., Richards, G., Thomas-Chollier, M., Kerner, P., Coornaert, D., Degnan, B. M. and Vervoort, M. (2007) Origin and diversification of the basic helix-loop-helix gene family in metazoans: Insights from comparative genomics. BMC Evolutionary Biology, 7 33: 1-18. doi:10.1186/1471-2148-7-33 45   119 Cited 119 times in Scopus119 0
Abbott, R.J. and Lowe, A. J. (2004) Origins, establishment and evolution of new polyploidy species: Senecio cambrensis and S. eboracensis in the British Isles. Biological Journal of the Linnean Society, 82 4: 467-474. doi:10.1111/j.1095-8312.2004.00333.x 57   109 Cited 117 times in Scopus117 0
Hoehl, Michael, Rigoutsos, Isidore and Ragan, Mark A. (2006) Pattern-based phylogenetic distance estimation and tree reconstruction. Evolutionary Bioinformatics, 2 359-375. 82   10
Erpenbeck, D., Nichols, S. A., Voigt, O., Dohrmann, M., Degnan, B. M., Hooper, J. N. A. and Worheide, G. (2007) Phylogenetic analyses under secondary structure-specific substitution models outperform traditional approaches: Case studies with diploblast LSU. Journal of Molecular Evolution, 64 5: 543-557. doi:10.1007/s00239-006-0146-3 44   22 Cited 23 times in Scopus23 0
Wu, Martin, Sun, Ling V., Vamathevan, Jessica, Riegler, Markus, Deboy, Robert, Brownlie, Jeremy C., McGraw, Elizabeth A., Martin, William, Esser, Christian, Ahmadinejad, Nahal, Wiegand, Christian, Madupu, Ramana, Beanan, Maureen J., Brinkac, Lauren M., Daugherty, Sean C., Durkin, A. Scott, Kolonay, James F., Nelson, William C., Mohamoud, Yasmin, Lee, Perris, Berry, Kristi, Brook Young, M., Utterback, Teresa, Weidman, Janice, Nierman, William C., Paulsen, Ian T., Nelson, Karen E., Tettelin, Hervé, O'Neill, Scott L. and Eisen, Jonathan A. (2004) Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements. PLoS Biology, 2 3: 0327-0341. doi:10.1371/journal.pbio.0020069 626 369 375 Cited 344 times in Scopus344 46

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