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Hamilton, N, Hazel, D, Kearney, P, Traynor, O and Wildman, L (1998). A complete formal development using Cogito. In: Proceedings of the 21st Australasian Computer Science Conference, Acsc'98. 21st Australasian Computer Science Conference (ACSC 98), Perth Australia, (319-330). Feb 04-06, 1998. 36   0
Bustamam, Alhadi, Burrage, Kevin and Hamilton, Nicholas A. (2010). A GPU implementation of fast parallel Markov clustering in Bioinformatics using ELLPACK-R sparse data format. In: Juan E. Guerrero, Proceedings of the 2nd International Conference on Advances in Computing, Control and Telecommunication Technologies. ACT 2010, Jakarta, Indonesia, (173-175). 2 - 3 December, 2010. doi:10.1109/ACT.2010.10 158 4 Cited 1 times in Scopus1 0
Hamilton, N. A., Kerr, M., Burrage, K. and Teasdale, R. D. (2007). Analyzing real-time video microscopy: the dyamics and geometry of vescicles and tubules in endocytosis.. In Bonifacio, J. S., Dasso, M., Harford, J. B., Lippincott-Schwartz, J. and Yamada K. M. (Ed.), Current Protocols in Cell Biology 35 ed. (pp. 4.16.1-1.16.11) USA: John Wiley & Sons. 133  
Bustamam, A., Sehgal, M. S., Hamilton, N. A., Wong, S., Ragan, M. A. and Burrage, K (2009). An efficient parallel implementation of Markov clustering algorithm for large-scale protein-protein interaction networks that uses MPI. In: I. M. Arnawa, M. Muhafzan and S. Bahri, Proceedings of the 5th IMT-GT international conference on mathematics, statistics and their applications 2009 (ICMSA 2009). 5th IMT-GT international conference on mathematics, statistics and their applications, Bukittinggi, Indonesia, (94-101). 9 -11 June 2009. 423  
Combes, A., Short, K., Lefevre, J., Ju, A., Georgas, K., Rumballe, B., Mcmahon, A., Hamilton, N., Smyth, I. and Little, M. (2013). An Integrated Cell, Tissue and Whole Organ Profile of Kidney Morphogenesis. In: 49th Annual Scientific Meeting of the Australian and New Zealand Society of Nephrology, Brisbane Australia, (24-24). 9-11 September 2013. doi:10.1111/nep.12121 34   0 0
Combes, Alexander N., Short, Kieran M., Lefevre, James, Hamilton, Nicholas A., Little, Melissa H. and Smyth, Ian M. (2014) An integrated pipeline for the multidimensional analysis of branching morphogenesis. Nature Protocols, 9 12: 2859-2879. doi:10.1038/nprot.2014.193 12   Cited 1 times in Scopus1 1
Hamilton, N. and Huber, T. (2008). An Introduction to Protein contact Prediction. In Jonathan M. Keith (Ed.), Bioinformatics (pp. 87-104) USA: Humana Press. doi:10.1007/978-1-60327-429-6-3 75   Cited 4 times in Scopus4 0
Woodcroft, B. J., Hammond, L, Stow, J. L. and Hamilton, N. A. (2009) Automated organelle-based colocalization in whole-cell imaging. Cytometry Part A, 75A 11: 941-950. doi:10.1002/cyto.a.20786 57   18 Cited 18 times in Scopus18 0
Hamilton, A, Pantelic, S, Hanson,, Fink, L, Karunaratne, M and Teasdale, R D (2006). Automated subcellar phenotype classification : An introduction and recent results. In: Mikael Boden and Timothy Bailey, Conferences in research and practice in information technology online. 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006). 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006), Hobart, Australia, (67-72). 4/12/2006. 54  
Mathon, R. and Hamilton, N. A. (1999) Baer partitions of small order projective planes. The journal of combinatorial mathematics and combinatorial computing, 29 87-94. 41  
Pantelic, R., Ericksson, G. B., Hamilton, N. and Hankamer, B. (2007) Bilateral edge filter: Photometrically weighted, discontinuity based edge detection. Journal of Structural Biology, 160 1: 93-102. doi:10.1016/j.jsb.2007.07.005 136   7 Cited 6 times in Scopus6 0
Jeffery, Jessie M., Grigoriev, Ilya, Poser, Ina, van der Horst, Armando, Hamilton, Nicholas, Waterhouse, Nigel, Bleier, Jonathan, Subramaniam, V. Nathan, Maly, Ivan V., Akhmanova, Anna and Khanna, Kum Kum (2013) Centrobin regulates centrosome function in interphase cells by limiting pericentriolar matrix recruitment. Cell Cycle, 12 6: 899-906. doi:10.4161/cc.23879 66   3 Cited 4 times in Scopus4 0
Duran, C, Boskovic, Z, Imelfort, M, Batley, J, Hamilton, NA and Edwards, D (2010) CMap3D: a 3D visualization tool for comparative genetic maps. Bioinformatics, 26 2: 273-274. doi:10.1093/bioinformatics/btp646 151   5 Cited 7 times in Scopus7 0
Lamberton, Timothy O., Lefevre, James, Short, Kieram M., Smyth, Ian M. and Hamilton, Nicholas A. (2015) Comparing and distinguishing the structure of biological branching. Journal of Theoretical Biology, 365 226-237. doi:10.1016/j.jtbi.2014.10.001 16   0 Cited 0 times in Scopus0 1
Burrage, K., Burrage,P. M., Hamilton, N. and Tian, T (2006). Computer-intensive simulations for cellular models. In Albert Y Zomaya (Ed.), Parallel Computing in Bioinformatics and Computational Biology 1 ed. (pp. 79-119) New Jersey, USA: John Wiley & Sons. 92  
Wu, Selwin K., Gomez, Guillermo A., Michael, Magdalene, Verma, Suzie, Cox, Hayley L., Lefevre, James G., Parton, Robert G., Hamilton, Nicholas A., Neufeld, Zoltan and Yap, Alpha S. (2014) Cortical F-actin stabilization generates apical–lateral patterns of junctional contractility that integrate cells into epithelia. Nature Cell Biology, 16 2: 167-178. doi:10.1038/ncb2900 59   22 Cited 22 times in Scopus22 32
Hamilton, Nicholas (2002) Degree 8 maximal arcs in PG(2,2(h)), h odd. Journal of Combinatorial Theory Series A, 100 2: 265-276. doi:10.1006/jcta.2002.3297 47   7 Cited 7 times in Scopus7 0
Wu, S., Gomez, G. A., Michael, M., Verma, S., Cox, H., Lefevre, J. G., Parton, R. G., Hamilton, N. A. and Yap, A. S. (2014). Disruption of cortical tension patterning drives the outgrowth of oncogenic cells. In: EACR-23: 23rd Biennial Congress of the European Association for Cancer Research, Munich, Germany, (S67-S67). 5-8 July 2014. 17   0
Fink, J. Lynn and Hamilton, Nicholas (2007) DomainDraw: A macromolecular feature drawing program. In Silico Bilogy, 7 2: 145-150. 75   Cited 7 times in Scopus7
Hamilton, Nick (2009) Edge of darkness. New Scientist, 201 2698: 25-25. 23   0
Hamilton, Nicholas and Mathon, Rudolf (2001) Existence and non-existence of m-systems of polar spaces. European Journal of Combinatorics, 22 1: 51-61. doi:10.1006/eujc.2000.0417 40   9 Cited 10 times in Scopus10 0
Hamilton, N. A., Pantelic, R. S., Hanson, K. and Teasdale, R. D. (2007) Fast automated cell phenotype image classification. BMC Bioinformatics, 8 110: 1-8. doi:10.1186/1471-2105-8-110 61 1 40 Cited 51 times in Scopus51 0
Bustamam, Alhadi, Burrage, Kevin and Hamilton, Nicolas A. (2012) Fast parallel Markov clustering in bioinformatics using massively parallel computing on GPU with CUDA and ELLPACK-R sparse format. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9 3: 679-692. doi:10.1109/TCBB.2011.68 81 3 8 Cited 7 times in Scopus7 2
Bustamam, Alhadi, Burrage, Kevin and Hamilton, Nicholas A. (2010). Fast parallel Markov clustering in bioinformatics using massively parallel graphics processing unit computing. In: Joint PDMC+HiBi Workshop 2010: 2010 Ninth International Workshop on Parallel and Distributed Methods in Verification; and Second International Workshop on High Performance Computational Systems Biology. Proceedings. Joint PDMC/HiBi Workshop 2010: International Workshop on High Performance Computational Systems Biology (2nd, HiBi, 2010); International Workshop on Parallel and Distributed Methods in Verification (9th, PDMC, 2010), Enschede, Netherlands, (116-125). 30 September-1 October 2010. doi:10.1109/PDMC-HiBi.2010.23 107 8 Cited 1 times in Scopus1 0
Cauchie, Sara, De Clerck, Frank and Hamilton, Nicholas (2002) Full embeddings of (alpha, beta)-geometries in projective spaces. European Journal of Combinatorics, 23 6: 635-646. doi:10.1006/eujc.2002.0593 86   6 Cited 6 times in Scopus6 0
Short, Kieran M., Combes, Alexander N., Lefevre, James, Ju, Adler L., Georgas, Kylie M., Lamberton, Timothy, Cairncross, Oliver, Rumballe, Bree A., McMahon, Andrew P., Hamilton, Nicholas A., Smyth, Ian M. and Little, Melissa H. (2014) Global quantification of tissue dynamics in the developing mouse kidney. Developmental Cell, 29 2: 188-202. doi:10.1016/j.devcel.2014.02.017 42   8 Cited 12 times in Scopus12 2
Hamilton, Nicholas and Penttila, Tim (2001) Groups of maximal arcs. Journal of Combinatorial Theory Series A, 94 1: 63-86. doi:10.1006/jcta.2000.3126 48   15 Cited 13 times in Scopus13 0
Mangold, Sabine, Wu, Selwin K., Norwood, Suzanne J., Collins, Brett M., Hamilton, Nicholas A., Thorn, Peter and Yap, Alpha S. (2011) Hepatocyte growth factor acutely perturbs actin filament anchorage at the epithelial zonula adherens. Current Biology, 21 6: 503-507. doi:10.1016/j.cub.2011.02.018 71   13 Cited 14 times in Scopus14 0
Yeo, Jeremy Changyu, Wall, Adam Alexander, Stow, Jennifer Lea and Hamilton, Nicholas Ahti (2013) High-throughput quantification of early stages of phagocytosis. Biotechniques, 55 3: 115-124. doi:10.2144/000114075 38   1 Cited 4 times in Scopus4 0
DE Resmini, MJ and Hamilton, N (1998) Hyperovals and unitals in Figueroa planes. European Journal of Combinatorics, 19 2: 215-220. doi:10.1006/eujc.1997.0166 17   6 0
Kerr, Markus C., Wang, Jack T. H., Castro, Natalie A., Hamilton, Nicholas A., Town, Liam, Brown, Darren L., Meunier, Frederic A., Brown, Nat F., Stow, Jennifer L. and Teasdale, Rohan D. (2010) Inhibition of the PtdIns(5) kinase PIKfyve disrupts intracellular replication of Salmonella. EMBO Journal, 29 8: 1331-1347. doi:10.1038/emboj.2010.28 86   30 Cited 31 times in Scopus31 3
Belward, John A., Burrage, Kevin, Teasdale, Rohan D. and Hamilton, Nicholas A. (2011). Linear models for endocytic transformations from live cell imaging. In: William McLean and Tony Roberts, Proceedings of the 15th Computational Techniques and Applications Conference. CTAC2010 : 15th Biennial Computational Techniques and Applications Conference, Univeristy of New South Wales, Sydney, Australia, (C156-C171). 28 November - 1 December 2010. 75 19 Cited 0 times in Scopus0
Sprenger, J., Fink, L., Karunaratne, S., Hanson, K., Hamilton, N. A. and Teasdale, R. D. (2008) LOCATE: A mammalian protein subcellular localization database. Nucleic Acids Research, 36 Database issue: D230-D233. doi:10.1093/nar/gkm950 56   57 Cited 65 times in Scopus65 0
Hamilton, N. A., Stoichev, S. and Tonchev, V. (2000) Maximal arcs and disjoint maximat arcs in projective planes of order 16. Journal of Geometry, 67 117-126. 27  
Hamilton, N. and Thas, J. A. (2006) Maximal arcs in PG(2,q) and partial flocks of the quadratic cone. Advances In Geometry, 6 1: 39-51. doi:10.1515/ADVGEOM.2006.003 44   2 Cited 2 times in Scopus2 0
Lefevre, J., Marshall, D. J., Combes, A. N., Ju, A. L., Little, M. H. and Hamilton, N. A. (2013) Modelling cell turnover in a complex tissue during development. Journal of Theoretical Biology, 338 66-79. doi:10.1016/j.jtbi.2013.08.033 30   3 Cited 5 times in Scopus5 0
Hamilton, N. and Mathony, R. (2003) More maximal arcs in Desarguesian projective planes and their geometric structure. Advances In Geometry, 3 3: 251-261. doi:10.1515/advg.2003.015 48   12 0
Hamilton, N and Quinn, CT (2000) m-systems of polar spaces and maximal arcs in projective planes. Bulletin of the Belgian Mathematical Society-Simon Stevin, 7 2: 237-248. 28   10
Smutny, Michael, Wu, Selwin K., Gomez, Guillermo A., Mangold, Sabine, Yap, Alpha S. and Hamilton, Nicholas A. (2011) Multicomponent analysis of junctional movements regulated by myosin II isoforms at the epithelial zonula adherens. PLoS One, 6 7 Article # e22458: . doi:10.1371/journal.pone.0022458 45   12 Cited 13 times in Scopus13 0
Smutny, Michael, Cox, Hayley L., Leerberg, Joanne M., Kovacs, Eva M., Conti, Mary Anne, Ferguson, Charles, Hamilton, Nicholas A., Parton, Robert G., Adelstein, Robert S. and Yap, Alpha S. (2010) Myosin II isoforms identify distinct functional modules that support integrity of the epithelial zonula adherens. Nature Cell Biology, 12 7: 696-702. doi:10.1038/ncb2072 84 1 111 Cited 117 times in Scopus117 7
Kovacs, Eva M., Verma, Suzie, Ali, Radiy G., Ratheesh, Aparna, Hamilton, Nicholas A., Akhmanova, Anna and Yap, Alpha S. (2011) N-WASP regulates the epithelial junctional actin cytoskeleton through a non-canonical post-nucleation pathway. Nature Cell Biology, 13 8: 934-943. doi:10.1038/ncb2290 82   40 Cited 41 times in Scopus41 3
Lamberton, Timothy O., Condon, Nicholas D., Stow, Jennifer L. and Hamilton, Nicholas A. (2014) On linear models and parameter identifiability in experimental biological systems. Journal of Theoretical Biology, 358 102-121. doi:10.1016/j.jtbi.2014.05.028 25   0 Cited 0 times in Scopus0 3
Hamilton, N. A. and Khodkar, A. (1999) On the minimal possible volumes of strong Steiner trades. Australasian Journal of Combinatorics, 20 197-203. 39  
Blokhuis, A, Hamilton, N and Wilbrink, H (1998) On the non-existence of Thas maximal arcs in odd order projective planes. European Journal of Combinatorics, 19 4: 413-417. doi:10.1006/eujc.1997.0205 22   2 0
Hamilton, N. and Mathon, R. (2004) On the spectrum of non-Denniston maximal arcs in PG(2,2h). European Journal of Combinatorics, 25 3: 415-421. doi:10.1016/j.ejc.2003.07.006 43 2 6 Cited 7 times in Scopus7 0
Hamilton, Nicholas A. (2012) Open source tools for fluorescent imaging. Methods in Enzymology, 504 393-417. doi:10.1016/B978-0-12-391857-4.00020-3 47   3 Cited 3 times in Scopus3 0
Follett, J., Norwood, S., Hamilton, N., Collins, B., Bugarcic, A. and Teasdale, R. D. (2014). Parkinson's Disease Causing Mutations Alters Retromer's Function. In: Molecular Biology of the Cell. ASCB/IFCB Meeting, Philadelphia Pa, (). Dec 06-10, 2014. 14   0
Hamilton, N. A. and de Resmini, M. J. (1999) Partitioning hyperovals in PG(2, 64). Bulletin of the Institute of Combinatorics and its Applications, 27 89-94. 34  
De Clerck, Frank, Delanote, Mario, Hamilton, Nicholas and Mathon, Rudolf (2001) Perp-systems and partial geometries. Advances in Geometry, 2 1: 1-12. 52   9
Beiko, R. G. and Hamilton, N. (2006) Phylogenetic identification of lateral genetic transfer events. Bmc Evolutionary Biology, 6 15: . doi:10.1186/1471-2148-6-15 51   66 Cited 79 times in Scopus79 0

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