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Su, Leo Y., Willner, Dana L. and Segall, Anca M. (2010) An antimicrobial peptide that targets DNA repair intermediates in vitro inhibits Salmonella growth within murine macrophages. Antimicrobial Agents and Chemotherapy, 54 5: 1888-1899. doi:10.1128/AAC.01610-09 62   12 Cited 14 times in Scopus14 0
Desnues, Christelle, Rodriguez-Brito, Beltran, Rayhawk, Steve, Kelley, Scott, Tran, Tuong, Haynes, Matthew, Liu, Hong, Furlan, Mike, Wegley, Linda, Chau, Betty, Ruan, Yijun, Hall, Dana, Angly, Florent E., Edwards, Robert A., Li, Linlin, Thurber, Rebecca Vega, Reid, R. Pamela, Siefert, Janet, Souza, Valeria, Valentine, David L., Swan, Brandon K., Breitbart, Mya and Rohwer, Forest (2008) Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature, 452 7185: 340-343. doi:10.1038/nature06735 50   105 Cited 112 times in Scopus112 0
Kelly, Linda Wegley, Barott, Katie L., Dinsdale, Elizabeth, Friedlander, Alan M., Nosrat, Bahador, Obura, David, Sala, Enric, Sandin, Stuart A., Smith, Jennifer E., Vermeij, Mark J. A., Williams, Gareth J., Willner, Dana and Rohwer, Forest (2012) Black reefs: Iron-induced phase shifts on coral reefs. ISME Journal, 6 3: 638-649. doi:10.1038/ismej.2011.114 55   8 Cited 10 times in Scopus10 22
Ng, Terry Fei Fan, Willner, Dana L., Lim, Yan Wei, Schmieder, Robert, Chau, Betty, Nilsson, Christina, Anthony, Simon, Ruan, Yijun, Rohwer, Forest and Breitbart, Mya (2011) Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. PLoS One, 6 6: Article number e20579. doi:10.1371/journal.pone.0020579 54   48 Cited 53 times in Scopus53 9
Willner, Dana, Haynes, Matthew R., Furlan, Mike, Hanson, Nicole, Kirby, Breeann, Lim, Yan Wei, Rainey, Paul B., Schmieder, Robert, Youle, Merry, Conrad, Douglas and Rohwer, Forest (2012) Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American Journal of Respiratory Cell and Molecular Biology, 46 2: 127-131. doi:10.1165/rcmb.2011-0253OC 58   22 Cited 26 times in Scopus26 12
Willner, Dana, Daly, Joshua, Whiley, David, Grimwood, Keith, Wainwright, Claire E. and Hugenholtz, Philip (2012) Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples. PLoS One, 7 4: e34605.1-e34605.12. doi:10.1371/journal.pone.0034605 111   16 Cited 17 times in Scopus17 3
Jiang, Lei, Willner, Dana, Danoy, Patrick, Xu, Huji and Brown, Matthew A. (2013) Comparison of the performance of two commercial genome-wide association study genotyping platforms in Han Chinese samples. G3-Genes Genomes Genetics, 3 1: 23-29. doi:10.1534/g3.112.004069 44   5 Cited 2 times in Scopus2 0
Willner, Dana and Furlan, Mike (2010) Deciphering the role of phage in the cystic fibrosis airway. Virulence, 1 4: 309-313. 22   Cited 8 times in Scopus8
Braff, William A., Willner, Dana, Hugenholtz, Philip, Rabaey, Korneel and Buie, Cullen R. (2013) Dielectrophoresis-based discrimination of bacteria at the strain level based on their surface properties. PLoS ONE, 8 1: e76751.1-e76751.7. doi:10.1371/journal.pone.0076751 50   3 Cited 3 times in Scopus3 81
Willner, D., Hugenholtz, P., Tan, M.E., Yerkovich, S.T., Hopkins, P.M. and Chambers, D.C. (2012). Distinct microbial signatures of healthy and failing lung allografts. In: Abstract Issue: International Society for Heart and Lung Transplantation 32nd Annual Meeting and Scientific Sessions. 32nd Annual Meeting and Scientific Sessions of the International Society for Heart and Lung Transplantation/Meeting of the ISHLT Academy Core Competencies in Mechanical Circulatory Support, Prague, Czech Republic, (S32-S32). 17-21 April 2012. doi:10.1016/j.healun.2012.01.072 72   2 0
Costello, Mary-Ellen, Ciccia, Francesco, Gardiner, Brooke, Marshall, Mhairi, Willner, Dana, Kenna, Tony, Triolo, Giovanni and Brown, Matthew A. (2013). Evidence Of a Microbial Signature In The Intestinal Microbiome In Ankylosing Spondylitis.. In: 77th Annual Meeting of the American-College-of-Rheumatology / 48th Annual Meeting of the Association-of-Rheumatology-Health-Professionals, San Diego Ca, (S1066-S1067). Oct 25-30, 2013. doi:10.1002/art.38216 55   0 0
Willner, Dana and Hugenholtz, Philip (2013) From deep sequencing to viral tagging: recent advances in viral metagenomics. Bioessays, 35 5: 436-442. doi:10.1002/bies.201200174 45   6 Cited 6 times in Scopus6 18
Dinsdale, Elizabeth A., Edwards, Robert A., Hall, Dana, Angly, Florent, Breitbart, Mya, Brulc, Jennifer M., Furlan, Mike, Desnues, Christelle, Haynes, Matthew, Li, Lin Lin, McDaniel, Lauren, Moran, Mary Ann, Nelson, Karen E., Nilsson, Christina, Olson, Robert, Paul, John, Brito, Beltran R., Ruan, Yi Jun, Swan, Brandon K., Stevens, Rick, Valentine, David L., Thurber, Rebecca V., Wegley, Linda, White, Bryan A. and Rohwer, Forest (2008) Functional metagenomic profiling of nine biomes. Nature, 455 7214: 830-830. doi:10.1038/nature07346 47   5 Cited 3 times in Scopus3 0
Dinsdale, Elizabeth A., Edwards, Robert A., Hall, Dana, Angly, Florent, Breitbart, Mya, Brulc, Jennifer M., Furlan, Mike, Desnues, Christelle, Haynes, Matthew, Li, Lin Lin, McDaniel, Lauren, Moran, Mary Ann, Nelson, Karen E., Nilsson, Christina, Olson, Robert, Paul, John, Brito, Beltran R., Ruan, Yi Jun, Swan, Brandon K., Stevens, Rick, Valentine, David L., Thurber, Rebecca V., Wegley, Linda, White, Bryan A. and Rohwer, Forest (2008) Functional metagenomic profiling of nine biomes. Nature, 452 7187: 629-632. doi:10.1038/nature06810 92   367 Cited 391 times in Scopus391 8
Estrada, Karol, Styrkarsdottir, Unnur, Evangelou, Evangelos, Hsu, Yi-Hsiang, Duncan, Emma L., Ntzani, Evangelia E., Oei, Ling, Albagha, Omar M. E., Amin, Najaf, Kemp, John P., Koller, Daniel L., Li, Guo, Liu, Ching-Ti, Minster, Ryan L., Moayyeri, Alireza, Vandenput, Liesbeth, Willner, Dana, Xiao, Su-Mei, Yerges-Armstrong, Laura M., Zheng, Hou-Feng, Alonso, Nerea, Eriksson, Joel, Kammerer, Candace M., Kaptoge, Stephen K., Leo, Paul J., Thorleifsson, Gudmar, Wilson, Scott G., Wilson, James F., Aalto, Ville, Alen, Markku, Aragaki, Aaron K., Aspelund, Thor, Center, Jacqueline R., Dailiana, Zoe, Duggan, David J ., Garcia, Melissa, Garcia-Giralt, Natàlia, Giroux, Sylvie, Hallmans, Göran, Hocking, Lynne J., Husted, Lise Bjerre, Jameson, Karen A., Khusainova, Rita, Kim, Ghi Su, Kooperberg, Charles, Koromila, Theodora, Kruk, Marcin, Laaksonen, Marika, Lacroix, Andrea Z., Lee, Seung Hun, Leung, Ping C., Lewis, Joshua R ., Masi, Laura, Mencej-Bedrac, Simona, Nguyen, Tuan V., Nogues, Xavier, Patel, Millan S., Prezelj, Janez, Rose, Lynda M., Scollen, Serena, Siggeirsdottir, Kristin, Smith, Albert V., Svensson, Olle, Trompet, Stella, Trummer, Olivia, van Schoor, Natasja M., Woo, Jean, Zhu, Kun, Balcells, Susana, Brandi, Maria Luisa, Buckley, Brendan M., Cheng, Sulin, Christiansen, Claus, Cooper, Cyrus, Dedoussis, George, Ford, Ian, Frost, Morten, Goltzman, David, Gonzalez-Macias, Jesús, Kahonen, Mika, Karlsson, Magnus, Khusnutdinova, Elza, Koh, Jung?Min, Kollia, Panagoula, Langdahl, Bente Lomholt, Leslie, William D., Lips, Paul, Ljunggren, Östen, Lorenc, Roman S., Marc, Janja, Mellstrom, Dan, Obermayer-Pietsch, Barbara, Olmos, José M ., Pettersson-Kymmer, Ulrika, Reid, David M., Riancho, José A., Ridker, Paul M., Rousseau, François, Slagboom, P. Eline, Tang, Nelson L.S., Urreizti, Roser, Van Hul, Wim, Viikari, Jorma, Zarrabeitia, Maria T., Aulchenko, Yurii S., Castano-Betancourt, Martha, Grundberg, Elin, Herrera, Lizbeth, Ingvarsson, Thorvaldur, Johannsdottir, Hrefna, Kwan, Tony, Li, Rui, Luben, Robert, Medina-Gomez, Carolina, Palsson, Stefan Th, Reppe, Sjur, Rotter, Jerome I., Sigurdsson, Gunnar, van Meurs, Joyce B. J., Verlaan, Dominique, Williams, Frances M.K., Wood, Andrew R., Zhou, Yanhua, Gautvik, Kaare M., Pastinen, Tomi, Raychaudhuri, Soumya, Cauley, Jane A., Chasman, Daniel I., Clark, Graeme R., Cummings, Steven R., Danoy, Patrick, Dennison, Elaine M., Eastell, Richard, Eisman, John A., Gudnason, Vilmundur, Hofman, Albert, Jackson, Rebecca D., Jones, Graeme, Jukema, J. Wouter, Khaw, Kay?Tee, Lehtimaki, Terho, Liu, Yongmei, Lorentzon, Mattias, McCloskey, Eugene, Mitchell, Braxton D., Nandakumar, Kannabiran, Nicholson, Geoffrey C., Oostra, Ben A., Peacock, Munro, Pols, Huibert A. P., Prince, Richard L., Raitakari, Olli, Reid, Ian R., Robbins, John, Sambrook, Philip N., Sham, Pak Chung, Shuldiner, Alan R., Tylavsky, Frances A., van Duijn, Cornelia M., Wareham, Nick J., Cupples, L. Adrienne, Econs, Michael J., Evans, David M., Harris, Tamara B., Kung, Annie W. C., Psaty, Bruce M., Reeve, Jonathan, Spector, Timothy D ., Streeten, Elizabeth A., Zillikens, M. Carola, Thorsteinsdottir, Unnur, Ohlsson, Claes, Karasik, David, Richards, J. Brent, Brown, Matthew A., Stefansson, Kari, Uitterlinden, André G., Ralston, Stuart H., Ioannidis, John P. A., Kiel, Douglas P. and Rivadeneira, Fernando (2012) Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. Nature Genetics, 44 5: 491-501. doi:10.1038/ng.2249 287   163 Cited 164 times in Scopus164 9
Angly, Florent E., Willner, Dana, Rohwer, Forest, Hugenholtz, Philip and Tyson, Gene W. (2012) Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Research, 40 12: e94.1-e94.8. doi:10.1093/nar/gks251 88 48 23 Cited 28 times in Scopus28 2
Willner, D., Ab-Ghani, N. A., Yerkovich, S., Tan, M. E., Hopkins, P. M., Chambers, D. C. and Hugenholtz, P. (2013). Longitudinal holistic profiling of the lung transplant microbiome. In: ISHLT 33rd Annual Meeting and Scientific Sessions. 33rd Annual Meeting and Scientific Sessions of the International Society for Heart and Lung Transplantation, Montreal, Canada, (S10-S11). 24-27 April 2013. doi:10.1016/j.healun.2013.01.004 45   1 0
Willner, Dana, Furlan, Mike, Haynes, Matthew, Schmieder, Robert, Angly, Florent E., Silva, Joas, Tammadoni, Sassan, Nosrat, Bahador, Conrad, Douglas and Rohwer, Forest (2009) Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS One, 4 10: 1-12. doi:10.1371/journal.pone.0007370 40   109 Cited 114 times in Scopus114 16
Thurber, Rebecca Vega, Willner-Hall, Dana, Rodriguez-Mueller, Christelle, Desnues, Christelle, Edwards, Robert A., Angly, Florent, Dinsdale, Elizabeth, Kelly, Linda and Rohwer, Forest (2009) Metagenomic analysis of stressed coral holobionts. Environmental Microbiology, 11 8: 2148-2163. doi:10.1111/j.1462-2920.2009.01935.x 47   93 Cited 114 times in Scopus114 0
Willner, Dana, Furlan, Mike, Schmieder, Robert, Grasis, Juris A., Pride, David T., Relman, David A., Angly, Florent E., McDole, Tracey, Mariella, Ray P., Rohwer, Forest and Haynes, Matthew (2011) Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America, 108 Supp. 1: 4547-4553. doi:10.1073/pnas.1000089107 69   32 Cited 34 times in Scopus34 0
Willner, Dana and Hugenholtz, Phil (2013) Metagenomics and community profiling: culture-independent techniques in the clinical laboratory. Clinical Microbiology Newsletter, 35 1: 1-9. doi:10.1016/j.clinmicnews.2012.12.001 68 6 Cited 0 times in Scopus0 12
Lim, Yan Wei, Schmieder, Robert, Haynes, Matthew, Willner, Dana, Furlan, Mike, Youle, Merry, Abbott, Katelynn, Edwards, Robert, Evangelista, Jose, Conrad, Douglas and Rohwer, Forest (2013) Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities. Journal of Cystic Fibrosis, 12 2: 154-164. doi:10.1016/j.jcf.2012.07.009 45   5 Cited 16 times in Scopus16 1
Willner, Dana, Thurber, Rebecca Vega and Rohwer, Forest (2009) Metagenomic signatures of 86 microbial and viral metagenomes. Environmental Microbiology, 11 7: 1752-1766. doi:10.1111/j.1462-2920.2009.01901.x 47   55 Cited 59 times in Scopus59 0
Dinsdale, Elizabeth A., Pantos, Olga, Smriga, Steven, Edwards, Robert A., Angly, Florent, Wegley, Linda, Hatay, Mark, Hall, Dana, Brown, Elysa, Haynes, Matthew, Krause, Lutz, Sala, Enric, Sandin, Stuart A., Thurber, Rebecca Vega, Willis, Bette L., Azam, Farooq, Knowlton, Nancy and Rohwer, Forest (2008) Microbial ecology of four coral atolls in the Northern Line Islands. PLoS ONE, 3 2: e1584-1-e1584-17. doi:10.1371/journal.pone.0001584 78   131 Cited 152 times in Scopus152 24
Cassman, Noriko, Prieto-Davo, Alejandra, Walsh, Kevin, Silva, Genivaldo G. Z., Angly, Florent, Akhter, Sajia, Barott, Katie, Busch, Julia, McDole, Tracey, Haggerty, J. Matthew, Willner, Dana, Alarcon, Gadiel, Ulloa, Osvaldo, DeLong, Edward F., Dutilh, Bas E., Rohwer, Forest and Dinsdale, Elizabeth A. (2012) Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology, 14 11: 3043-3065. doi:10.1111/j.1462-2920.2012.02891.x 34   9 Cited 8 times in Scopus8 7
Willner, Dana L., Hugenholtz, Philip, Yerkovich, Stephanie T., Tan, Maxine E., Daly, Joshua N., Lachner, Nancy, Hopkins, Peter M. and Chambers, Daniel C. (2013) Reestablishment of recipient-associated microbiota in the lung allograft is linked to reduced risk of bronchiolitis obliterans syndrome. American Journal of Respiratory and Critical Care Medicine, 187 6: 640-647. doi:10.1164/rccm.201209-1680OC 78 1 13 Cited 13 times in Scopus13 1
Willner, Dana, Haynes, Matthew R., Furlan, Mike, Schmieder, Robert, Lim, Yan Wei, Rainey, Paul B., Rohwer, Forest and Conrad, Douglas (2012) Spatial distribution of microbial communities in the cystic fibrosis lung. ISME Journal, 6 2: 471-474. doi:10.1038/ismej.2011.104 51   32 Cited 40 times in Scopus40 13
Angly, Florent E., Willner, Dana, Prieto-Davó, Alejandra, Edwards, Robert A., Schmieder, Robert, Vega-Thurber, Rebecca, Antonopoulos, Dionysios A., Barott, Katie, Cottrell, Matthew T., Desnues, Christelle, Dinsdale, Elizabeth A., Furlan, Mike, Haynes, Matthew, Henn, Matthew R., Hu, Yongfei, Kirchman, David L., McDole, Tracey, McPherson, John D., Meyer, John D., Miller, R. Michael, Mundt, Egbert, Naviaux, Robert K., Rodriguez-Mueller, Beltran, Stevens, Rick, Wegley, Linda, Zhang, Lixin, Zhu, Baoli and Rohwer, Forest (2009) The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Computational Biology, 5 12: e1000593.1-e1000593.10. doi:10.1371/journal.pcbi.1000593 44   68 Cited 75 times in Scopus75 2
Allen, Bethany, Willner, Dana, Oechel, Walter C. and Lipson, David (2009) Top-down control of microbial activity and biomass in an Arctic soil ecosystem. Environmental Microbiology, 12 3: 642-648. doi:10.1111/j.1462-2920.2009.02104.x 23   9 Cited 10 times in Scopus10 0
Rodriguez-Brito, B, Li, LL, Wegley, L, Furlan, M, Angly, F, Breitbart, M, Buchanan, J, Desnues, C, Dinsdale, E, Edwards, R, Felts, B, Haynes, M, Liu, H, Lipson, D, Mahaffy, J, Martin-Cuadrado, AB, Mira, A, Nulton, J, Pasic, L, Rayhawk, S, Rodriguez-Mueller, J, Rodriguez-Valera, F, Salamon, P, Srinagesh, S, Thingstad, TF, Tran, T, Thurber, RV, Willner, D, Youle, M and Rohwer, F (2010) Viral and microbial community dynamics in four aquatic environments. ISME Journal, 4 6: 739-751. doi:10.1038/ismej.2010.1 95   111 Cited 104 times in Scopus104 9
Willner, Dana, Desnues, Christelle and Rohwer, Forest (2011). Viral metagenomics: From fish slime to the world. In Robert W. Li (Ed.), Metagenomics and its applications in agriculture, biomedicine, and environmental studies (pp. 337-366) Hauppauge, NY, U.S.A.: Nova Scientific Publishers. 287