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Su, Leo Y., Willner, Dana L. and Segall, Anca M. (2010) An antimicrobial peptide that targets DNA repair intermediates in vitro inhibits Salmonella growth within murine macrophages. Antimicrobial Agents and Chemotherapy, 54 5: 1888-1899. doi:10.1128/AAC.01610-09 64   12 Cited 14 times in Scopus14 0
Desnues, Christelle, Rodriguez-Brito, Beltran, Rayhawk, Steve, Kelley, Scott, Tran, Tuong, Haynes, Matthew, Liu, Hong, Furlan, Mike, Wegley, Linda, Chau, Betty, Ruan, Yijun, Hall, Dana, Angly, Florent E., Edwards, Robert A., Li, Linlin, Thurber, Rebecca Vega, Reid, R. Pamela, Siefert, Janet, Souza, Valeria, Valentine, David L., Swan, Brandon K., Breitbart, Mya and Rohwer, Forest (2008) Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature, 452 7185: 340-343. doi:10.1038/nature06735 52   108 Cited 115 times in Scopus115 3
Kelly, Linda Wegley, Barott, Katie L., Dinsdale, Elizabeth, Friedlander, Alan M., Nosrat, Bahador, Obura, David, Sala, Enric, Sandin, Stuart A., Smith, Jennifer E., Vermeij, Mark J. A., Williams, Gareth J., Willner, Dana and Rohwer, Forest (2012) Black reefs: Iron-induced phase shifts on coral reefs. ISME Journal, 6 3: 638-649. doi:10.1038/ismej.2011.114 58   13 Cited 12 times in Scopus12 20
Ng, Terry Fei Fan, Willner, Dana L., Lim, Yan Wei, Schmieder, Robert, Chau, Betty, Nilsson, Christina, Anthony, Simon, Ruan, Yijun, Rohwer, Forest and Breitbart, Mya (2011) Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. PLoS One, 6 6: Article number e20579. doi:10.1371/journal.pone.0020579 58   58 Cited 59 times in Scopus59 8
Willner, Dana, Haynes, Matthew R., Furlan, Mike, Hanson, Nicole, Kirby, Breeann, Lim, Yan Wei, Rainey, Paul B., Schmieder, Robert, Youle, Merry, Conrad, Douglas and Rohwer, Forest (2012) Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American Journal of Respiratory Cell and Molecular Biology, 46 2: 127-131. doi:10.1165/rcmb.2011-0253OC 60   25 Cited 29 times in Scopus29 11
Willner, Dana, Daly, Joshua, Whiley, David, Grimwood, Keith, Wainwright, Claire E. and Hugenholtz, Philip (2012) Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples. PLoS One, 7 4: e34605.1-e34605.12. doi:10.1371/journal.pone.0034605 118   20 Cited 21 times in Scopus21 3
Jiang, Lei, Willner, Dana, Danoy, Patrick, Xu, Huji and Brown, Matthew A. (2013) Comparison of the performance of two commercial genome-wide association study genotyping platforms in Han Chinese samples. G3-Genes Genomes Genetics, 3 1: 23-29. doi:10.1534/g3.112.004069 50   6 Cited 5 times in Scopus5 0
Willner, Dana and Furlan, Mike (2010) Deciphering the role of phage in the cystic fibrosis airway. Virulence, 1 4: 309-313. 27   Cited 9 times in Scopus9
Braff, William A., Willner, Dana, Hugenholtz, Philip, Rabaey, Korneel and Buie, Cullen R. (2013) Dielectrophoresis-based discrimination of bacteria at the strain level based on their surface properties. PLoS ONE, 8 1: e76751.1-e76751.7. doi:10.1371/journal.pone.0076751 52   6 Cited 5 times in Scopus5 81
Willner, D., Hugenholtz, P., Tan, M.E., Yerkovich, S.T., Hopkins, P.M. and Chambers, D.C. (2012). Distinct microbial signatures of healthy and failing lung allografts. In: Abstract Issue: International Society for Heart and Lung Transplantation 32nd Annual Meeting and Scientific Sessions. 32nd Annual Meeting and Scientific Sessions of the International Society for Heart and Lung Transplantation/Meeting of the ISHLT Academy Core Competencies in Mechanical Circulatory Support, Prague, Czech Republic, (S32-S32). 17-21 April 2012. doi:10.1016/j.healun.2012.01.072 74   2 0
Costello, Mary-Ellen, Ciccia, Francesco, Gardiner, Brooke, Marshall, Mhairi, Willner, Dana, Kenna, Tony, Triolo, Giovanni and Brown, Matthew A. (2013). Evidence Of a Microbial Signature In The Intestinal Microbiome In Ankylosing Spondylitis.. In: 77th Annual Meeting of the American-College-of-Rheumatology / 48th Annual Meeting of the Association-of-Rheumatology-Health-Professionals, San Diego Ca, (S1066-S1067). Oct 25-30, 2013. doi:10.1002/art.38216 65   0 0
Willner, Dana and Hugenholtz, Philip (2013) From deep sequencing to viral tagging: recent advances in viral metagenomics. Bioessays, 35 5: 436-442. doi:10.1002/bies.201200174 52   10 Cited 10 times in Scopus10 18
Dinsdale, Elizabeth A., Edwards, Robert A., Hall, Dana, Angly, Florent, Breitbart, Mya, Brulc, Jennifer M., Furlan, Mike, Desnues, Christelle, Haynes, Matthew, Li, Lin Lin, McDaniel, Lauren, Moran, Mary Ann, Nelson, Karen E., Nilsson, Christina, Olson, Robert, Paul, John, Brito, Beltran R., Ruan, Yi Jun, Swan, Brandon K., Stevens, Rick, Valentine, David L., Thurber, Rebecca V., Wegley, Linda, White, Bryan A. and Rohwer, Forest (2008) Functional metagenomic profiling of nine biomes. Nature, 455 7214: 830-830. doi:10.1038/nature07346 49   7 Cited 3 times in Scopus3 0
Dinsdale, Elizabeth A., Edwards, Robert A., Hall, Dana, Angly, Florent, Breitbart, Mya, Brulc, Jennifer M., Furlan, Mike, Desnues, Christelle, Haynes, Matthew, Li, Lin Lin, McDaniel, Lauren, Moran, Mary Ann, Nelson, Karen E., Nilsson, Christina, Olson, Robert, Paul, John, Brito, Beltran R., Ruan, Yi Jun, Swan, Brandon K., Stevens, Rick, Valentine, David L., Thurber, Rebecca V., Wegley, Linda, White, Bryan A. and Rohwer, Forest (2008) Functional metagenomic profiling of nine biomes. Nature, 452 7187: 629-632. doi:10.1038/nature06810 96   380 Cited 401 times in Scopus401 8
Estrada, Karol, Styrkarsdottir, Unnur, Evangelou, Evangelos, Hsu, Yi-Hsiang, Duncan, Emma L., Ntzani, Evangelia E., Oei, Ling, Albagha, Omar M. E., Amin, Najaf, Kemp, John P., Koller, Daniel L., Li, Guo, Liu, Ching-Ti, Minster, Ryan L., Moayyeri, Alireza, Vandenput, Liesbeth, Willner, Dana, Xiao, Su-Mei, Yerges-Armstrong, Laura M., Zheng, Hou-Feng, Alonso, Nerea, Eriksson, Joel, Kammerer, Candace M., Kaptoge, Stephen K., Leo, Paul J., Thorleifsson, Gudmar, Wilson, Scott G., Wilson, James F., Aalto, Ville, Alen, Markku, Aragaki, Aaron K., Aspelund, Thor, Center, Jacqueline R., Dailiana, Zoe, Duggan, David J ., Garcia, Melissa, Garcia-Giralt, Natàlia, Giroux, Sylvie, Hallmans, Göran, Hocking, Lynne J., Husted, Lise Bjerre, Jameson, Karen A., Khusainova, Rita, Kim, Ghi Su, Kooperberg, Charles, Koromila, Theodora, Kruk, Marcin, Laaksonen, Marika, Lacroix, Andrea Z., Lee, Seung Hun, Leung, Ping C., Lewis, Joshua R ., Masi, Laura, Mencej-Bedrac, Simona, Nguyen, Tuan V., Nogues, Xavier, Patel, Millan S., Prezelj, Janez, Rose, Lynda M., Scollen, Serena, Siggeirsdottir, Kristin, Smith, Albert V., Svensson, Olle, Trompet, Stella, Trummer, Olivia, van Schoor, Natasja M., Woo, Jean, Zhu, Kun, Balcells, Susana, Brandi, Maria Luisa, Buckley, Brendan M., Cheng, Sulin, Christiansen, Claus, Cooper, Cyrus, Dedoussis, George, Ford, Ian, Frost, Morten, Goltzman, David, Gonzalez-Macias, Jesús, Kahonen, Mika, Karlsson, Magnus, Khusnutdinova, Elza, Koh, Jung?Min, Kollia, Panagoula, Langdahl, Bente Lomholt, Leslie, William D., Lips, Paul, Ljunggren, Östen, Lorenc, Roman S., Marc, Janja, Mellstrom, Dan, Obermayer-Pietsch, Barbara, Olmos, José M ., Pettersson-Kymmer, Ulrika, Reid, David M., Riancho, José A., Ridker, Paul M., Rousseau, François, Slagboom, P. Eline, Tang, Nelson L.S., Urreizti, Roser, Van Hul, Wim, Viikari, Jorma, Zarrabeitia, Maria T., Aulchenko, Yurii S., Castano-Betancourt, Martha, Grundberg, Elin, Herrera, Lizbeth, Ingvarsson, Thorvaldur, Johannsdottir, Hrefna, Kwan, Tony, Li, Rui, Luben, Robert, Medina-Gomez, Carolina, Palsson, Stefan Th, Reppe, Sjur, Rotter, Jerome I., Sigurdsson, Gunnar, van Meurs, Joyce B. J., Verlaan, Dominique, Williams, Frances M.K., Wood, Andrew R., Zhou, Yanhua, Gautvik, Kaare M., Pastinen, Tomi, Raychaudhuri, Soumya, Cauley, Jane A., Chasman, Daniel I., Clark, Graeme R., Cummings, Steven R., Danoy, Patrick, Dennison, Elaine M., Eastell, Richard, Eisman, John A., Gudnason, Vilmundur, Hofman, Albert, Jackson, Rebecca D., Jones, Graeme, Jukema, J. Wouter, Khaw, Kay?Tee, Lehtimaki, Terho, Liu, Yongmei, Lorentzon, Mattias, McCloskey, Eugene, Mitchell, Braxton D., Nandakumar, Kannabiran, Nicholson, Geoffrey C., Oostra, Ben A., Peacock, Munro, Pols, Huibert A. P., Prince, Richard L., Raitakari, Olli, Reid, Ian R., Robbins, John, Sambrook, Philip N., Sham, Pak Chung, Shuldiner, Alan R., Tylavsky, Frances A., van Duijn, Cornelia M., Wareham, Nick J., Cupples, L. Adrienne, Econs, Michael J., Evans, David M., Harris, Tamara B., Kung, Annie W. C., Psaty, Bruce M., Reeve, Jonathan, Spector, Timothy D ., Streeten, Elizabeth A., Zillikens, M. Carola, Thorsteinsdottir, Unnur, Ohlsson, Claes, Karasik, David, Richards, J. Brent, Brown, Matthew A., Stefansson, Kari, Uitterlinden, André G., Ralston, Stuart H., Ioannidis, John P. A., Kiel, Douglas P. and Rivadeneira, Fernando (2012) Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. Nature Genetics, 44 5: 491-501. doi:10.1038/ng.2249 297   186 Cited 189 times in Scopus189 9
Angly, Florent E., Willner, Dana, Rohwer, Forest, Hugenholtz, Philip and Tyson, Gene W. (2012) Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Research, 40 12: e94.1-e94.8. doi:10.1093/nar/gks251 91 52 26 Cited 31 times in Scopus31 2
Willner, D., Ab-Ghani, N. A., Yerkovich, S., Tan, M. E., Hopkins, P. M., Chambers, D. C. and Hugenholtz, P. (2013). Longitudinal holistic profiling of the lung transplant microbiome. In: ISHLT 33rd Annual Meeting and Scientific Sessions. 33rd Annual Meeting and Scientific Sessions of the International Society for Heart and Lung Transplantation, Montreal, Canada, (S10-S11). 24-27 April 2013. doi:10.1016/j.healun.2013.01.004 46   1 0
Willner, Dana, Furlan, Mike, Haynes, Matthew, Schmieder, Robert, Angly, Florent E., Silva, Joas, Tammadoni, Sassan, Nosrat, Bahador, Conrad, Douglas and Rohwer, Forest (2009) Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS One, 4 10: 1-12. doi:10.1371/journal.pone.0007370 44   116 Cited 120 times in Scopus120 15
Thurber, Rebecca Vega, Willner-Hall, Dana, Rodriguez-Mueller, Christelle, Desnues, Christelle, Edwards, Robert A., Angly, Florent, Dinsdale, Elizabeth, Kelly, Linda and Rohwer, Forest (2009) Metagenomic analysis of stressed coral holobionts. Environmental Microbiology, 11 8: 2148-2163. doi:10.1111/j.1462-2920.2009.01935.x 53   101 Cited 124 times in Scopus124 0
Willner, Dana, Furlan, Mike, Schmieder, Robert, Grasis, Juris A., Pride, David T., Relman, David A., Angly, Florent E., McDole, Tracey, Mariella, Ray P., Rohwer, Forest and Haynes, Matthew (2011) Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America, 108 Supp. 1: 4547-4553. doi:10.1073/pnas.1000089107 72   36 Cited 37 times in Scopus37 0
Willner, Dana and Hugenholtz, Phil (2013) Metagenomics and community profiling: culture-independent techniques in the clinical laboratory. Clinical Microbiology Newsletter, 35 1: 1-9. doi:10.1016/j.clinmicnews.2012.12.001 75 8 Cited 1 times in Scopus1 12
Lim, Yan Wei, Schmieder, Robert, Haynes, Matthew, Willner, Dana, Furlan, Mike, Youle, Merry, Abbott, Katelynn, Edwards, Robert, Evangelista, Jose, Conrad, Douglas and Rohwer, Forest (2013) Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities. Journal of Cystic Fibrosis, 12 2: 154-164. doi:10.1016/j.jcf.2012.07.009 51   8 Cited 19 times in Scopus19 1
Willner, Dana, Thurber, Rebecca Vega and Rohwer, Forest (2009) Metagenomic signatures of 86 microbial and viral metagenomes. Environmental Microbiology, 11 7: 1752-1766. doi:10.1111/j.1462-2920.2009.01901.x 50   55 Cited 60 times in Scopus60 3
Dinsdale, Elizabeth A., Pantos, Olga, Smriga, Steven, Edwards, Robert A., Angly, Florent, Wegley, Linda, Hatay, Mark, Hall, Dana, Brown, Elysa, Haynes, Matthew, Krause, Lutz, Sala, Enric, Sandin, Stuart A., Thurber, Rebecca Vega, Willis, Bette L., Azam, Farooq, Knowlton, Nancy and Rohwer, Forest (2008) Microbial ecology of four coral atolls in the Northern Line Islands. PLoS ONE, 3 2: e1584-1-e1584-17. doi:10.1371/journal.pone.0001584 84   141 Cited 158 times in Scopus158 24
Jiang, Lei, Yin, Jian, Ye, Lingying, Yang, Jian, Hemani, Gibran, Liu, Ai-Jun, Zou, Hejian, He, Dongyi, Sun, Lingyun, Zeng, Xiaofeng, Li, Zhanguo, Zheng Yi, Lin, Yiping, Liu, Yi, Fang, Yongfei, Xu, Jianhua, Li, Yinong, Dai, Shengming, Guan, Jianlong, Jiang, Lindi, Wei, Qianghua, Wang, Yi, Li, Yang, Huang, Cibo, Zuo, Xiaoxia, Liu, Yu, Wu, Xin, Zhang, Libin, Zhou, Ling, Zhang, Qing, Li, Ting, Chen, Ling, Xu, Zhen, Yang, Xiaoping, Qian, Feng, Xie, Weilin, Liu Wei, Guo, Qian, Huang, Weilin, Zhao, Jing, Li, Mengmeng, Jin, Yanhua, Gao, Jie, Lv, Yeng, Wang, Yiwen, Lin, Li, Guo, Aihua, Danoy, Patrick, Willner, Dana, Cremin, Catherine, Hadler, Johanna, Zhang, Fengchun, Zhao, Yan, Li, Mengtao, Yue, Tao, Fan, Xiaolei, Guo, Jianping, Mu, Rong, Li, Jingyi, Wu, Chao, Zeng, Ming, Wang, Jiucun, Li, Shilin, Jin, Li, Wang, Binbin, Wang, Jing, Ma, Xu, Sun, Liangdan, Zhang, Xuejun, Brown, Matthew A., Visscher, Peter M., Su, Ding-feng and Xu, Huji (2014) Novel risk loci for rheumatoid arthritis in han chinese and congruence with risk variants in europeans. Arthritis and Rheumatology, 66 5: 1121-1132. doi:10.1002/art.38353 50   5 Cited 3 times in Scopus3 2
Cassman, Noriko, Prieto-Davo, Alejandra, Walsh, Kevin, Silva, Genivaldo G. Z., Angly, Florent, Akhter, Sajia, Barott, Katie, Busch, Julia, McDole, Tracey, Haggerty, J. Matthew, Willner, Dana, Alarcon, Gadiel, Ulloa, Osvaldo, DeLong, Edward F., Dutilh, Bas E., Rohwer, Forest and Dinsdale, Elizabeth A. (2012) Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology, 14 11: 3043-3065. doi:10.1111/j.1462-2920.2012.02891.x 38   11 Cited 10 times in Scopus10 7
Willner, Dana L., Hugenholtz, Philip, Yerkovich, Stephanie T., Tan, Maxine E., Daly, Joshua N., Lachner, Nancy, Hopkins, Peter M. and Chambers, Daniel C. (2013) Reestablishment of recipient-associated microbiota in the lung allograft is linked to reduced risk of bronchiolitis obliterans syndrome. American Journal of Respiratory and Critical Care Medicine, 187 6: 640-647. doi:10.1164/rccm.201209-1680OC 85 1 15 Cited 16 times in Scopus16 1
Willner, Dana, Low, Serene, Steen, Jason A., George, Narelle, Nimmo, Graeme R., Schembri, Mark A. and Hugenholtz, Philip (2014) Single clinical isolates from acute uncomplicated urinary tract infections are representative of dominant In Situ populations. mBio, 5 2: e01064-13. doi:10.1128/mBio.01064-13 29   1 Cited 3 times in Scopus3 5
Willner, Dana, Haynes, Matthew R., Furlan, Mike, Schmieder, Robert, Lim, Yan Wei, Rainey, Paul B., Rohwer, Forest and Conrad, Douglas (2012) Spatial distribution of microbial communities in the cystic fibrosis lung. ISME Journal, 6 2: 471-474. doi:10.1038/ismej.2011.104 53   35 Cited 44 times in Scopus44 12
Angly, Florent E., Willner, Dana, Prieto-Davó, Alejandra, Edwards, Robert A., Schmieder, Robert, Vega-Thurber, Rebecca, Antonopoulos, Dionysios A., Barott, Katie, Cottrell, Matthew T., Desnues, Christelle, Dinsdale, Elizabeth A., Furlan, Mike, Haynes, Matthew, Henn, Matthew R., Hu, Yongfei, Kirchman, David L., McDole, Tracey, McPherson, John D., Meyer, John D., Miller, R. Michael, Mundt, Egbert, Naviaux, Robert K., Rodriguez-Mueller, Beltran, Stevens, Rick, Wegley, Linda, Zhang, Lixin, Zhu, Baoli and Rohwer, Forest (2009) The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Computational Biology, 5 12: e1000593.1-e1000593.10. doi:10.1371/journal.pcbi.1000593 48   78 Cited 82 times in Scopus82 2
Allen, Bethany, Willner, Dana, Oechel, Walter C. and Lipson, David (2009) Top-down control of microbial activity and biomass in an Arctic soil ecosystem. Environmental Microbiology, 12 3: 642-648. doi:10.1111/j.1462-2920.2009.02104.x 26   9 Cited 13 times in Scopus13 0
Rodriguez-Brito, B, Li, LL, Wegley, L, Furlan, M, Angly, F, Breitbart, M, Buchanan, J, Desnues, C, Dinsdale, E, Edwards, R, Felts, B, Haynes, M, Liu, H, Lipson, D, Mahaffy, J, Martin-Cuadrado, AB, Mira, A, Nulton, J, Pasic, L, Rayhawk, S, Rodriguez-Mueller, J, Rodriguez-Valera, F, Salamon, P, Srinagesh, S, Thingstad, TF, Tran, T, Thurber, RV, Willner, D, Youle, M and Rohwer, F (2010) Viral and microbial community dynamics in four aquatic environments. ISME Journal, 4 6: 739-751. doi:10.1038/ismej.2010.1 104   118 Cited 112 times in Scopus112 9
Willner, Dana, Desnues, Christelle and Rohwer, Forest (2011). Viral metagenomics: From fish slime to the world. In Robert W. Li (Ed.), Metagenomics and its applications in agriculture, biomedicine, and environmental studies (pp. 337-366) Hauppauge, NY, U.S.A.: Nova Scientific Publishers. 302