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Barquist, Lars, Langridge, Gemma C., Turner, Daniel J., Phan, Minh-Duy, Turner, A. Keith, Bateman, Alex, Parkhill, Julian, Wain, John and Gardner, Paul P. (2013) A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Research, 41 8: 4549-4564. doi:10.1093/nar/gkt148 29   16 Cited 17 times in Scopus17 2
Caws, Maxine, Thwaites, Guy, Stepniewska, Kasia, Nguyen, Thi Ngoc Lan, Nguyen, Thi Hong Duyen, Nguyen, Thi Phuong, Mai, Nguyet Thu Huyen, Phan, Minh Duy, Tran, Huu Loc, Tran, Thi Hong Chau, van Soolingen, Dick, Kremer, Kristin, Nguyen, Van Vinh Chau, Nguyen, Tran Chinh and Farrar, Jeremy (2006) Beijing genotype of Mycobacterium tuberculosis is significantly associated with human immunodeficiency virus infection and multidrug resistance in cases of tuberculous meningitis. Journal of Clinical Microbiology, 44 11: 3934-3939. doi:10.1128/JCM.01181-06 91   48 Cited 54 times in Scopus54 0
Easton, Donna M., Totsika, Makrina, Allsopp, Luke P., Phan, Minh-Duy, Idris, Adi, Wurpel, Daniël J., Sherlock, Orla, Zhang, Bing, Venturini, Carola, Beatson, Scott A., Mahony, Timothy J., Cobbold, Rowland N. and Schembri, Mark A. (2011) Characterization of EhaJ, a new autotransporter protein from enterohemorrhagic and enteropathogenic Escherichia coli. Frontiers in Microbiology: Frontiers in Cellular and Infection Microbiology, 2 JUNE: 120.1-120.9. doi:10.3389/fmicb.2011.00120 194   10 Cited 9 times in Scopus9 1
Tho, D. Q., Ha, D. T. M., Duy, P. M., Lan, N. T. N., Hoa, D. V., Chau, N. V. V., Farrar, J. and Caws, M. (2008) Comparison of MAS-PCR and GenoType MTBDR assay for the detection of rifampicin-resistant Mycobacterium tuberculosis. International Journal of Tuberculosis And Lung Disease, 12 11: 1306-1312. 38   11 Cited 12 times in Scopus12
Selkrig, Joel, Mosbahi, Khedidja, Webb, Chaille T., Belousoff, Matthew J., Perry, Andrew J., Wells, Timothy J., Morris, Faye, Leyton, Denisse L., Totsika, Makrina, Phan, Minh-Duy, Celik, Nermin, Kelly, Michelle, Oates, Clare, Hartland, Elizabeth L., Robins-Browne, Roy M., Ramarathinam, Sri Harsha, Purcell, Anthony W., Schembri, Mark A., Strugnell, Richard A., Henderson, Ian R., Walker, Daniel and Lithgow, Trevor (2012) Discovery of an archetypal protein transport system in bacterial outer membranes. Nature Structural and Molecular Biology, 19 5: 506-510. doi:10.1038/nsmb.2261 104   41 Cited 40 times in Scopus40 9
Holt, Kathryn E., Phan, Minh Duy, Baker, Stephen, Duy, Pham Thanh, Nga, Tran Vu Thieu, Nair, Satheesh, Turner, A. Keith, Walsh, Ciara, Fanning, Se´amus, Farrell-Ward, Sine´ad, Dutta, Shanta, Kariuki, Sam, Weill, Francois-Xavier, Parkhill, Julian, Dougan, Gordon and Wain, John (2011) Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid. PLoS Neglected Tropical Diseases, 5 7: e1245-1-e1245-13. doi:10.1371/journal.pntd.0001245 59   25 Cited 23 times in Scopus23 7
van Doorn, H. R., An, D. D., de Jong, M. D., Lan, N. T., Hoa, D. V., Quy, H. T., Chau, N. V., Duy, P. M., Tho, D. Q., Chinh, N. T., Farrar, J. J. and Caws, M. (2008) Fluoroquinolone resistance detection in Mycobacterium tuberculosis with locked nucleic acid probe real-time PCR. International Journal of Tuberculosis and Lung Disease, 12 7: 736-742. 45   32 Cited 32 times in Scopus32
Petty, Nicola K., Ben Zakour, Nouri L., Stanton-Cook, Mitchell, Skippington, Elizabeth, Totsika, Makrina, Forde, Brian M., Phan, Minh-Duy, Gomes Moriel, Danilo, Peters, Kate M., Davies, Mark, Rogers, Benjamin A., Dougan, Gordon, Rodriguez-Baño, Jesús, Pascual, Alvaro, Pitout, Johann D., Upton, Mathew, Paterson, David L., Walsh, Timothy R., Schembri, Mark A. and Beatson, Scott A. (2014) Global dissemination of a multidrug resistant Escherichia coli clone. Proceedings of the National Academy of Sciences, 111 15: 5694-5699. doi:10.1073/pnas.1322678111 86 1 18 42
Vejborg, Rebecca M., de Evgrafov, Mari R., Phan, Minh Duy, Totsika, Makrina, Schembri, Mark A. and Hancock, Viktoria (2012) Identification of genes important for growth of asymptomatic Bacteriuria Escherichia coli in urine. Infection and Immunity, 80 9: 3179-3188. doi:10.1128/IAI.00473-12 50   4 Cited 6 times in Scopus6 0
Phan, Minh-Duy and Wain, John (2008) IncHI plasmids, a dynamic link between resistance and pathogenicity. Journal of Infection in Developing Countries, 2 4: 272-278. 43   9 Cited 9 times in Scopus9
Totsika, Makrina, Beatson, Scott A., Sarkar, Sohinee, Phan, Minh-Duy, Petty, Nicola K., Bachmann, Nathan, Szubert, Marek, Sidjabat, Hanna E., Paterson, David L., Upton, Mathew and Schembri, Mark A. (2011) Insights into a multidrug resistant escherichia coli pathogen of the globally disseminated ST131 lineage: Genome analysis and virulence mechanisms. Plos One, 6 10: e26578-1-e26578-11. doi:10.1371/journal.pone.0026578 119   39 Cited 37 times in Scopus37 1
Tho, D. Q., Ha, D. M., Duy, P. M., Lan, N. T. N., Hoa, D. V., Chau, N. V. V., Farrar, J. J. and Caws, M. (2008). MAS-PCR: A Quick Cheap Detection Test for Isoniazid Resistance in Mycobacterium tuberculosis. In: International Journal of Infectious Diseases. , , (E319-E319). . doi:10.1016/j.ijid.2008.05.854 16   0 0
Caws, M., Thwaites, G. E., Duy, P. M., Tho, D. Q., Lan, N. T., Hoa, D. V., Chau, T. T., Huyen, M. N., Anh, P. T., Chau, N. V., Chinh, T. N., Stepniewska, K. and Farrar, J. (2007) Molecular analysis of Mycobacterium tuberculosis causing multidrug-resistant tuberculosis meningitis. International Journal of Tuberculosis and Lung Disease, 11 2: 202-208. 52   9 Cited 11 times in Scopus11
Goh, H. M. Sharon, Beatson, Scott A., Totsika, Makrina, Moriel, Danilo G., Phan, Minh-Duy, Szubert, Jan, Runnegar, Naomi, Sidjabat, Hanna E., Paterson, David L., Nimmo, Graeme R., Lipman, Jeffrey and Schembri, Mark A. (2013) Molecular analysis of the Acinetobacter baumannii biofilm-associated protein. Applied and Environmental Microbiology, 79 21: 6535-6543. doi:10.1128/AEM.01402-13 115   5 Cited 6 times in Scopus6 4
Holt, Kathryn E., Thomson, Nicholas R., Wain, John, Phan, Minh Duy, Nair, Satheesh, Hasan, Rumina, Bhutta, Zulfiqar A., Quail, Michael A., Norbertczak, Halina, Walker, Danielle, Dougan, Gordon and Parkhill, Julian (2007) Multidrug-resistant Salmonella enterica serovar paratyphi A harbors IncHI1 plasmids similar to those found in serovar typhi. Journal of Bacteriology, 189 11: 4257-4264. doi:10.1128/JB.00232-07 44   34 Cited 33 times in Scopus33 0
Caws, M., Duy, Phan Minh, Tho, Dau Quang, Lan, Nguyen Thi Ngoc, Hoa, Dai Viet and Farrar, Jeremy (2006) Mutations prevalent among rifampin- and isoniazid-resistant Mycobacterium tuberculosis isolates from a hospital in Vietnam. Journal of Clinical Microbiology, 44 7: 2333-2337. doi:10.1128/JCM.00330-06 40   38 Cited 37 times in Scopus37 0
Caws, Maxine, Tho, Dau Quang, Duy, Phan Minh, Lan, Nguyen Thi Ngoc, Hoa, Dai Viet, Torok, Mili Estee, Chau, Tran Thi Hong, Chau, Nguyen Van Vinh, Chinh, Nguyen Tran and Farrar, Jeremy (2007) PCR-restriction fragment length polymorphism for rapid, low-cost identification of isoniazid-resistant Mycobacterium tuberculosis. Journal of Clinical Microbiology, 45 6: 1789-1793. doi:10.1128/JCM.01960-06 60   9 Cited 13 times in Scopus13 0
Thwaites, Guy, Caws, Maxine, Chau, Tran Thi, D'Sa, Anthony, Lan, Nguyen Thi Guoc, Huyen, Mai Nguyet Thu, Gagneux, Sebastian, Anh, Phan Thi Hoanh Anh, Tho, Dau Quang, Torok, Estee, Nhu, Nguyen Thi Qyunh, Duyen, Nguyen Thi Hong, Duy, Phan Minh, Richenberg, Jonathan, Simmons, Cameron, Hien, Tran Tinh and Farrar, Jeremy (2008) Relationship between Mycobacterium tuberculosis genotype and the clinical phenotype of pulmonary and meningeal tuberculosis. Journal of Clinical Microbiology, 46 4: 1363-1368. doi:10.1128/JCM.02180-07 66   67 Cited 76 times in Scopus76 0
Sarkar, Sohinee, Ulett, Glen C., Totsika, Makrina, Phan, Minh-Duy and Schembri, Mark A. (2014) Role of capsule and O antigen in the virulence of uropathogenic Escherichia coli. PLoS One, 9 4: . doi:10.1371/journal.pone.0094786 39   3 Cited 4 times in Scopus4 0
Langridge, Gemma C., Phan, Minh-Duy, Turner, Daniel J., Perkins, Timothy T., Parts, Leopold, Haase, Jana, Charles, Ian, Maskell, Duncan J., Peters, Sarah E., Dougan, Gordon, Wain, John, Parkhill, Julian and Turner, A. Keith (2009) Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Research, 19 12: 2308-2316. doi:10.1101/gr.097097.109 59   139 Cited 140 times in Scopus140 11
Forde, Brian M., Ben Zakour, Nouri L., Stanton-Cook, Mitchell, Phan, Minh-Duy, Totsika, Makrina, Peters, Kate M., Chan, Kok Gan, Schembri, Mark A., Upton, Mathew and Beatson, Scott A. (2014) The complete genome sequence of Escherichia coli EC958: a high quality reference sequence for the globally disseminated multidrug resistant E. coli O25b:H4-ST131 clone. PLoS One, 9 8: e104400.1-e104400.13. doi:10.1371/journal.pone.0104400 41   2 4
Caws, Maxine, Thwaites, Guy, Dunstan, Sarah, Hawn, Thomas R., Lan, Nguyen Thi, Thuong, Nguyen Thuy, Stepniewska, Kasia, Huyen, Mai Nguyet, Bang, Nguyen Duc, Loc, Tran Huy, Gagneux, Sebastien, van Soolingen, Dick, Kremer, Kristin, van der Sande, Marianne, Small, Peter, Anh, Phan Thi, Chinh, Nguyen Tran, Quy, Hoang Thi, Duyen, Nguyen Thi, Tho, Dao Quang, Hieu, Nguyen T., Torok, Estee, Hien, Tranh Tinh, Dung, Nguyen Huy, Nhu, Nguyen T., Phan, Minh Duy, van Vinh Chau, Nguyen and Farrar, Jeremy (2008) The influence of host and bacterial genotype on the development of disseminated disease with Mycobacterium tuberculosis. PLoS Pathogens, 4 3: e1000034-1-e1000034-9. doi:10.1371/journal.ppat.1000034 62   180 Cited 196 times in Scopus196 0
Easton, Donna M., Allsopp, Luke P., Phan, Minh-Duy, Gomes Moriel, Danilo, Goh, Guan Kai, Beatson, Scott A., Mahony, Timothy J., Cobbold, Rowland N. and Schembri, Mark A. (2014) The intimin-like protein FdeC is regulated by H-NS and temperature in Enterohaemorrhagic Escherichia coli. Applied and Environmental Microbiology, 80 23: 7337-7347. doi:10.1128/AEM.02114-14 30   0 1
Phan, Minh-Duy, Peters, Kate M., Sarkar, Sohinee, Lukowski, Samuel W., Allsopp, Luke P., Moriel, Danilo Gomes, Achard, Maud E. S., Totsika, Makrina, Marshall, Vikki M., Upton, Mathew, Beatson, Scott A. and Schembri, Mark A. (2013) The serum resistome of a globally disseminated multidrug resistant uropathogenic Escherichia coli clone. PloS Genetics, 9 10: e1003834.1-e1003834.18. doi:10.1371/journal.pgen.1003834 66   13 Cited 11 times in Scopus11 9
Totsika, Makrina, Moriel, Danilo Gomes, Idris, Adi, Rogers, Benjamin A., Wurpel, Daniel J., Phan, Minh-Duy, Paterson, David L. and Schembri, Mark A. (2012) Uropathogenic Escherichia coli mediated urinary tract infection. Current Drug Targets, 13 11: 1386-1399. doi:10.2174/138945012803530206 175 1 13 Cited 15 times in Scopus15 0
Phan, Minh-Duy, Kidgell, Claire, Nair, Satheesh, Holt, Kathryn E., Turner, Arthur K., Hinds, Jason, Butcher, Philip, Cooke, Fiona J., Thomson, Nicholas R., Titball, Richard, Bhutta, Zulfiqar A., Hassan, Rumina, Dougan, Gordon and Wain, John (2009) Variation in Salmonella enterica serovar Typhi IncHI1 plasmids during the global spread of resistant typhoid fever. Antimicrobial Agents and Chemotherapy, 53 2: 716-727. doi:10.1128/AAC.00645-08 41   35 Cited 33 times in Scopus33 0