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DA Silva, L, Parry, S, Reid, L, Keith, P, Waddell, N, Kossai, M, Clarke, C, Lakhani, SR and Simpson, PT (2008) Aberrant expression of E-cadherin in lobular carcinomas of the breast. American Journal of Surgical Pathology, 32 5: 773-783. doi:10.1097/PAS.0b013e318158d6c5 424   54 Cited 65 times in Scopus65 0
Wells, CA, Chalk, AM, Forrest, A, Taylor, D, Waddell, N, Schroder, K, Himes, SR, Faulkner, G, Lo, S, Kasukawa, T, Kawaji, H, Kai, C, Kawai, J, Katayama, S, Carninci, P, Hayashizaki, Y, Hume, DA and Grimmond, SM (2006) Alternate transcription of the Toll-like receptor signaling cascade. Genome Biology, 7 2: R10.1-R10.17. doi:10.1186/gb-2006-7-2-r10 77   32 Cited 40 times in Scopus40 0
Smart, C.E., Wronski, A., French, J.D., Edwards, S.L., Asselin-Labat, M.L., Waddell, N., Peters, K., Brewster, B.L., Brooks, K., Simpson, K., Manning, N., Lakhani, S.R., Grimmond, S., Lindeman, G.J., Visvader, J.E. and Brown, M.A. (2011) Analysis of brca1-deficient mouse mammary glands reveals reciprocal regulation of Brca1 and c-kit. Oncogene, 30 13: 1597-1607. doi:10.1038/onc.2010.538 125   8 Cited 8 times in Scopus8 0
Quek, Kelly, Nones, Katia, Patch, Ann-Marie, Fink, J. Lynn, Newell, Felicity, Cloonan, Nicole, Miller, David, Fadlullah, Muhammad Z. H., Kassahn, Karin, Christ, Angelika N., Bruxner, Timothy J. C., Manning, Suzanne, Harliwong, Ivon, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Wani, Shivangi, Steptoe, Anita, Anderson, Matthew, Holmes, Oliver, Leonard, Conrad, Taylor, Darrin, Wood, Scott, Xu, Qinying, Australian Pancreatic Cancer Genome Initiative, Wilson, Peter, Biankin, Andrew V., Pearson, John V., Waddell, Nic and Grimmond, Sean M. (2014) A workflow to increase verification rate of chromosomal structural rearrangements using high-throughput next-generation sequencing. BioTechniques, 57 1: 31-38. doi:10.2144/000114189 30 1 0 Cited 0 times in Scopus0 3
Waddell, N, Ten Haaf, A, Marsh, A, Johnson, J, Walker, LC, Gongora, M, Brown, M, Grover, P, Girolami, M, Grimmond, S, Chenevix-Trench, G, Spurdle, AB and kConFab Investigators (2008) BRCA1 and BRCA2 missense variants of high and low clinical significance influence lymphoblastoid cell line post-irradiation gene expression. PLoS Genetics, 4 5: Article Number: e1000080. doi:10.1371/journal.pgen.1000080 67   5 Cited 4 times in Scopus4 0
Waddell, Nic, Jonnalagadda, Jyoti, Marsh, Anna, Grist, Scott, Jenkins, Mark, Hobson, Karen, Taylor, Malcolm, Lindeman, Geoff J., Tavtigian, Sean V., Suthers, Graeme, Goldgar, David, Oefner, Peter J., kConFab Investigators, Taylor, Darrin, Grimmond, Sean, Khanna, Kum Kum and Chenevix-Trench, Georgia (2006) Characterization of the breast cancer associated ATM 7271T>G (V2424G) mutation by gene expression profiling. Genes Chromosomes and Cancer, 45 12: 1169-1181. doi:10.1002/gcc.20381 109   7 Cited 5 times in Scopus5 0
Chou, Angela, Waddell, Nicola, Cowley, Mark J., Gill, Anthony J., Chang, David K., Patch, Ann-Marie, Nones, Katia, Wu, Jianmin, Pinese, Mark, Johns, Amber L., Miller, David K., Kassahn, Karin S., Nagrial, Adnan M., Wasan, Harpreet, Goldstein, David, Toon, Christopher W., Chin, Venessa, Chantrill, Lorraine, Humphris, Jeremy, Mead, R. Scott, Rooman, Ilse, Samra, Jaswinder S., Pajic, Marina, Musgrove, Elizabeth A., Pearson, John V., Morey, Adrienne L., Grimmond, Sean M. and Biankin, Andrew V. (2013) Clinical and molecular characterization of HER2 amplified-pancreatic cancer. Genome Medicine, 5 8: 78.1-78.10. doi:10.1186/gm482 27   8 Cited 6 times in Scopus6 81
Humphris, Jeremy L., Johns, Amber L., Simpson, Skye H., Cowley, Mark J., Pajic, Marina, Chang, David K., Nagrial, Adnan M., Chin, Venessa T., Chantrill, Lorraine A., Pinese, Mark, Mead, R. Scott, Gill, Anthony J., Samra, Jaswinder S., Kench, James G., Musgrove, Elizabeth A., Tucker, Katherine M., Spigelman, Allan D., Waddell, Nic, Grimmond, Sean M., Biankin, Andrew V. and The Australian Pancreatic Cancer Genome Inititiative (2014) Clinical and pathologic features of familial pancreatic cancer. Cancer, 120 23: 3669-3675. doi:10.1002/cncr.28863 22   0 Cited 0 times in Scopus0 118
Flanagan, James M., Cocciardi, Sibylle, Waddell, Nic, Johnstone, Cameron N., Marsh, Anna, Henderson, Stephen, Simpson, Peter, da Silva, Leonard, kConFab Investigators, Khanna, Kumkum, Lakhani, Sunil, Boshoff, Chris, Chenevix-Trench, Georgia, Brown, Melissa, Cummings, Margaret and Edwards, Stacey (2010) DNA methylome of familial breast cancer identifies distinct profiles defined by mutation status. American Journal of Human Genetics, 86 3: 420-433. doi:10.1016/j.ajhg.2010.02.008 142 7 36 Cited 43 times in Scopus43 0
Yan, Max, Xu, Huiling, Waddell, Nic, Shield-Artin, Kristy, Haviv, Izhak, McKay, Michael J., Fox, Stephen B. and KConFab Authors (2012) Enhanced RAD21 cohesin expression confers poor prognosis in BRCA2 and BRCAX, but not BRCA1 familial breast cancers. Breast Cancer Research, 14 2: R69.1-R69.11. doi:10.1186/bcr3176 28   8 Cited 7 times in Scopus7 0
Pylkas, K, Tommiska, J, Syrjakoski, K, Kere, J, Gatei, M, Waddell, N, Allinen, M, Karppinen, SM, Rapakko, K, Kaariainen, H, Aittomaki, K, Blomqvist, C, Mustonen, A, Holli, K, Khanna, KK, Kallioniemi, OP, Nevanlinna, H and Winqvist, R (2007) Evaluation of the role of Finnish ataxia-telangiectasia mutations in hereditary predisposition to breast cancer. Carcinogenesis, 28 5: 1040-1045. doi:10.1093/carcin/bgl237 50   10 Cited 9 times in Scopus9 0
Arnold, Jeremy M., Choong, David Y. H., Thompson, Ella R., kConFab, Waddell, Nic, Lindeman, Geoffrey J., Visvader, Jane E., Campbell, Ian G., Chenevix-Trench, Georgia, Brown, Melissa, Cummings, Margaret and Edwards, Stacey (2010) Frequent somatic mutations of GATA3 in non-BRCA1/BRCA2 familial breast tumors, but not in BRCA1-, BRCA2- or sporadic breast tumors. Breast Cancer Research And Treatment, 119 2: 491-496. doi:10.1007/s10549-008-0269-x 95 1 13 Cited 14 times in Scopus14 0
Waddell, Nic, Cocciardi, Sibylle, Johnson, Julie, Healey, Sue, Marsh, Anna, Riley, Joan, da Silva, Leonard, Vargas, Ana Cristina, Reid, Lynne, Simpson, Peter T., Lakhani, Sunil R. and Chenevix-Trench, Georgia (2010) Gene expression profiling of formalin-fixed, paraffin-embedded familial breast tumours using the whole genome-DASL assay. Journal of Pathology, 221 4: 452-461. doi:10.1002/path.2728 101   32 Cited 33 times in Scopus33 0
Vargas, Ana Cristina, McCart Reed, Amy E., Waddell, Nic, Lane, Annette, Reid, Lynne E., Smart, Chanel E., Cocciardi, Sibylle, da Silva, Leonard, Song, Sarah, Chenevix-Trench, Georgia, Simpson Peter T. and Lakhani, Sunil R. (2012) Gene expression profiling of tumour epithelial and stromal compartments during breast cancer progression. Breast Cancer Research and Treatment, 135 1: 153-165. doi:10.1007/s10549-012-2123-4 108 53 15 Cited 17 times in Scopus17 0
Nones, Katia, Waddell, Nic, Song, Sarah, Patch, Ann-Marie, Miller, David, Johns, Amber, Wu, Jianmin, Kassahn, Karin S., Wood, David, Bailey, Peter, Fink, Lynn, Manning, Suzanne, Christ, Angelika N., Nourse, Craig, Kazakoff, Stephen, Taylor, Darrin, Leonard, Conrad, Chang, David K., Jones, Marc D., Thomas, Michelle, Watson, Clare, Pinese, Mark, Cowley, Mark, Rooman, Ilse, Pajic, Marina, Butturini, Giovanni, Malpaga, Anna, Corbo, Vincenzo, Crippa, Stefano, Falconi, Massimo, Zamboni, Guiseppe, Castelli, Paola, APGI, Lawlor, Rita T., Gill, Anthony J., Scarpa, Aldo, Pearson, John V., Biankin, Andrew V. and Grimmond, Sean M. (2014) Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT-ROBO, ITGA2 and MET signaling. International Journal of Cancer, 2014 5: 1110-1118. doi:10.1002/ijc.28765 57   1 Cited 0 times in Scopus0 3
Forrest, Alistair R. R., Taylor, Darrin F., Crowe, Mark L., Chalk, Alistair M., Waddell, Nic J., Kolle, Gabriel, Faulkner, Geoffrey J., Kodzius, Rimantas, Katayama, Shintaro, Wells, Christine, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide and Grimmond, Sean M. (2006) Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases. Genome Biology, 7 1: R5.1-R5.15. doi:10.1186/gb-2006-7-1-r5 79   28 Cited 30 times in Scopus30 3
Nones, Katia, Waddell, Nicola, Wayte, Nicci, Patch, Ann-Marie, Bailey, Peter, Newell, Felicity, Holmes, Oliver, Fink, J. Lynn, Quinn, Michael C. J., Tang, Yue Hang, Lampe, Guy, Quek, Kelly, Loffler, Kelly A., Manning, Suzanne, Idrisoglu, Senel, Miller, David, Xu, Qinying, Waddell, Nick, Wilson, Peter J., Bruxner, Timothy J. C., Christ, Angelika N., Harliwong, Ivon, Nourse, Craig, Nourbakhsh, Ehsan, Anderson, Matthew, Kazakoff, Stephen, Leonard, Conrad, Wood, Scott, Simpson, Peter T., Reid, Lynne E., Krause, Lutz, Hussey, Damian J., Watson, David I., Lord, Reginald V., Nancarrow, Derek, Phillips, Wayne A., Gotely, David, Smithers, B. Mark, Whiteman, David C., Hayward, Nicholas K., Campbell, Peter J., Pearson, John V., Grimmond, Sean M. and Barbour, Andrew P. (2014) Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis. Nature Communications, 5 5224.1-5224.9. doi:10.1038/ncomms6224 33   0 30
Walker, Logan C., Krause, Lutz, kConFab Investigators, Spurdle, Amanda B. and Waddell, Nic (2012) Germline copy number variants are not associated with globally acquired copy number changes in familial breast tumours. Breast Cancer Research and Treatment, 134 3: 1005-1011. doi:10.1007/s10549-012-2024-6 58   3 Cited 4 times in Scopus4 0
Da Silva, Leonard, Simpson, Peter T., Smart, Chanek E., Cocciardi, Sibylle, Waddell, Nic, Lane, Annette, Morrison, Brian J., Vargas, Ana Cristina, Healey, Sue, Beesley, Jonathan, Pakkiri, Pria, Parry, Suzanne, Kurniawan, Nyoman, Reid, Lynne, Keith, Patricia, Faria, Paulo, Pereira, Emilio, Skalova, Alena, Bilous, Michael, Balleine, Rosemary L., Do, Hongdo, Dobrovic, Alexander, Fox, Stephen, Franco, Marcello, Reynolds, Brent, Khanna, Kum Kum, Cummings, Margaret, Chenevix-Trench, Georgia and Lakhani, Sunil R. (2010) HER3 and downstream pathways are involved in colonization of brain metastases from breast cancer. Breast Cancer Research, 12 4: R46-1-R46-11. doi:10.1186/bcr2603 117   24 Cited 28 times in Scopus28 0
Brewster, Brooke L., Rossiello, Francesca, French, Juliet D., Edwards, Stacey L., Wong, Ming, Wronski, Ania, Whiley, Phillip, Waddell, Nic, Chen, Xiaowei, Bove, Betsy, kConFab, Hopper, John L., John, Esther M., Andrulis, Irene, Daly, Mary, Volorio, Sara, Bernard, Loris, Peissel, Bernard, Manoukian, Siranoush, Barile, Monica, Pizzamiglio, Sara, Verderio, Paolo, Spurdle, Amanda B., Radice, Paolo, Godwin, Andrew K., Southey, Melissa C., Brown, Melissa A. and Peterlongo, Paolo (2012) Identification of fifteen novel germline variants in the BRCA1 3′UTR reveals a variant in a breast cancer case that introduces a functional miR-103 target site. Human Mutation, 33 12: 1665-1675. doi:10.1002/humu.22159 121   6 Cited 8 times in Scopus8 0
Brown, M.A., French, J.D., Edwards, S.L., Peters, K.M., Wronski, A., Smart, C.E., Brewster, B.L., Wee, J.E., Waddell, N. and Francis, G.D. (2010). Identification of novel biomarkers for breast cancer, including brca1-associated breast cancer. In: Abstract Book of the IMPAKT 2010 Breast Cancer Conference, Brussels, Belgium, 6-8 May 2010. IMPAKT Breast Cancer Conference 2010, Brussels, Belgium, (56-56). MAY 06-08, 2010. doi:10.1093/annonc/mdq145 97   0 0
Hudson, T. J., Anderson, W., Aretz, A., Barker, A. D., Grimmond, S. M., Pearson, J. V., Cloonan, N., Gardiner, B. A., Waddell, N. J., Wilson, P. J., Wainwright, B. J. and The International Cancer Genome Consortium (2010) International network of cancer genome projects. Nature, 464 7291: 993-998. doi:10.1038/nature08987 90   438 Cited 478 times in Scopus478 19
Krishnan, Keerthana, Steptoe, Anita L., Martin, Hilary C., Wani, Shivangi, Nones, Katia, Waddell, Nic, Mariasegaram, Mythily, Simpson, Peter T., Lakhani, Sunil R., Gabrielli, Brian, Vlassov, Alexander, Cloonan, Nicole and Grimmond, Sean M. (2013) MicroRNA-182-5-p targets a network of genes involved in DNA repair. RNA, 19 2: 230-242. doi:10.1261/rna.034926.112 62   15 Cited 16 times in Scopus16 5
Cloonan, Nicole, Wani, Shivangi, Xu, Qinying, Gu, Jian, Lea, Kristi, Heater, Sheila, Barbacioru, Catalin, Steptoe, Anita L., Martin, Hilary C., Nourbakhsh, Ehsan, Krishnan, Keerthana, Gardiner, Brooke, Wang, Xiaohui, Nones, Katia, Steen, Jason A., Matigan, Nicholas A., Wood, David L., Kassahn, Karin S., Waddell, Nic, Shepherd, Jill, Lee, Clarence, Ichikawa, Jeff, McKernan, Kevin, Bramlett, Kelli, Kuersten, Scott and Grimmond, Sean M. (2011) MicroRNAs and their isomiRs function cooperatively to target common biological pathways. Genome Biology: biology for the post-genomic era, 12 R126: 1-20. doi:10.1186/gb-2011-12-12-r126 52 1 69 Cited 75 times in Scopus75 12
Krishnan, Keerthana, Steptoe, Anita, Martin, Hilary, Pattabiraman, Diwakar R., Nones, Katia, Waddell, Nicola, Mariasegaram, Mythily, Simpson, Peter T., Lakhani, Sunil R., Vlassov, Alexander, Grimmond, Sean M. and Cloonan, Nicole (2013) miR-139-5p is a regulator of metastatic pathways in breast cancer. RNA, 19 12: 1767-1780. doi:10.1261/rna.042143.113 41   7 Cited 9 times in Scopus9 25
Waddell, N., Stein, S. R., Wagner, S. A., Bennett, I., Djougarian, A., Melana, S., Jaffer, S., Holland, J. F., Pogo, B. G. T., Gonda, T. J., Brown, M. A., Leo, P., Saunders, N. A., McMillan, N. A., Cocciardi, S., Vargas, A. C., Lakhani, S. R., Chenevix-Trench, G., Newman, B. and Francis, G. D. (2012) Morphological and molecular analysis of a breast cancer cluster at the ABC Studio in Toowong. Pathology, 44 5: 469-472. doi:10.1097/PAT.0b013e3283559e67 138 2 0 Cited 0 times in Scopus0 3
Arnold, JM, George, J, Tinker, AV, Tothill, R, Waddell, N, Simms, L, Locandro, B, Fereday, S, Traficante, N, Birrer, MJ, Defazio, A, Chenevix-Trench, G, Bowtelll, DDL and AOCS Study Grp (2008) Mutation of ERBB2 provides a novel alternative mechanism for the ubiquitous activation of RAS-MAPK in ovarian serous low malignant potential tumors. Molecular Cancer Research, 6 11: 1678-1690. doi:10.1158/1541-7786.MCR-08-0193 72   38 Cited 42 times in Scopus42 0
Cao, Ying, Hoeppner, Luke H., Bach, Steven, Guangqi, E., Guo, Yan, Wang, Enfeng, Wu, Jianmin, Cowley, Mark J., Chang, David K., Waddell, Nicola, Grimmond, Sean M., Biankin, Andrew V., Daly, Roger J., Zhang, Xiaohui and Mukhopadhyay, Debabrata (2013) Neuropilin-2 promotes extravasation and metastasis by interacting with endothelial alpha 5 integrin. Cancer Research, 73 14: 4579-4590. doi:10.1158/0008-5472.CAN-13-0529 35   3 Cited 2 times in Scopus2 1
Biankin, Andrew V., Waddell, Nicola, Kassahn, Karin S., Gingras, Marie-Claude, Muthuswamy, Lakshmi B., Johns, Amber L., Miller, David K., Wilson, Peter J., Patch, Ann-Marie, Wu, Jianmin, Chang, David K., Cowley, Mark J., Gardiner, Brooke B., Song, Sarah, Harliwong, Ivon, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi, Gongora, Milena, Pajic, Marina, Scarlett, Christopher J., Gill, Anthony J., Pinho, Andreia V., Rooman, Ilse, Anderson, Matthew, Holmes, Oliver, Leonard, Conrad, Taylor, Darrin, Wood, Scott, Xu, Christina, Nones, Katia, Fink, J. Lynn, Christ, Angelika, Bruxner, Tim, Cloonan, Nicole, Kolle, Gabriel, Newell, Felicity, Pinese, Mark, Mead, R. Scott, Humphris, Jeremy L., Kaplan, Warren, Jones, Marc D., Colvin, Emily K., Nagrial, Adnan M., Humphrey, Emily S., Chou, Angela, Chin, Venessa T., Chantrill, Lorraine A., Mawson, Amanda, Samra, Jaswinder S., Kench, James G., Lovell, Jessica A., Daly, Roger J., Merrett, Neil D., Toon, Christopher, Epari, Krishna, Nguyen, Nam Q., Barbour, Andrew, Zeps, Nikolajs, Australian Pancreatic Cancer Genome Initiative, Pearson, John V. and Grimmond, Sean M. (2012) Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature, 491 7424: 399-405. doi:10.1038/nature11547 203   221 Cited 216 times in Scopus216 101
Cowley, Mark J., Pinese, Mark, Kassahn, Karin S., Waddell, Nic, Pearson, John V., Grimmond, Sean M., Biankin, Andrew V., Hautaniemi, Sampsa and Wu, Jianmin (2012) PINA v2.0: Mining interactome modules. Nucleic Acids Research, 40 D1: D862-D865. doi:10.1093/nar/gkr967 34   40 Cited 40 times in Scopus40 0
Song, Sarah, Nones, Katia, Miller, David, Harliwong, Ivon, Kassahn, Karin S., Pinese, Mark, Pajic, Marina, Gill, Anthony J., Johns, Amber L., Anderson, Matthew, Holmes, Oliver, Leonard, Conrad, Taylor, Darrin, Wood, Scott, Xu, Qinying, Newell, Felicity, Cowley, Mark J., Wu, Jianmin, Wilson, Peter, Fink, Lynn, Biankin, Andrew V., Waddell, Nic, Grimmond, Sean M. and Pearson, John V. (2012) qpure: a tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profiles. PLoS One, 7 9: e45835.1-e45835.7. doi:10.1371/journal.pone.0045835 107   15 Cited 14 times in Scopus14 2
Antoniou, Antonis C., Sinilnikova, Olga M., Simard, Jacques, Léoné, Mélanie, Dumont, Martine, Neuhausen, Susan L., Struewing, Jeffery P., Stoppa-Lyonnet, Dominique, Barjhoux, Laure, Hughes, David J., Coupier, Isabelle, Belotti, Muriel, Lasset, Christine, Bonadona, Valérie, Bignon, Yves-Jean, Genetic Modifiers of Cancer Risk in BRCA1/2 Mutation Carriers Study (GEMO), Rebbeck, Timothy R., Wagner, Theresa, Lynch, Henry T., Domchek, Susan M., Nathanson, Katherine L., Garber, Judy E., Weitzel, Jeffrey, Narod, Steven A., Tomlinson, Gail, Olopade, Olufunmilayo I., Godwin, Andrew, Isaacs, Claudine, Jakubowska, Anna, Lubinski, Jan, Gronwald, Jacek, Górski, Bohdan, Byrski, Tomasz, Huzarski, Tomasz, Peock, Susan, Cook, Margaret, Baynes, Caroline, Murray, Alexandra, Rogers, Mark, Daly, Peter A., Dorkins, Huw, Epidemiological Study of BRCA1 and BRCA2 Mutation Carriers (EMBRACE), Schmutzler, Rita K., Versmold, Beatrix, Engel, Christoph, Meindl, Alfons, Arnold, Norbert, Niederacher, Dieter, Deissler, Helmut, German Consortium for Hereditary Breast and Ovarian Cancer (GCHBOC), Spurdle, Amanda B., Chen, Xiaoqing, Waddell, Nicola, Cloonan, Nicole, The Kathleen Cuningham Consortium for Research into Familial Breast Cancer (kConFab), Kirchhoff, Tomas, Offit, Kenneth, Offit, Kenneth, Friedman, Eitan, Kaufmann, Bella, Laitman, Yael, Galore, Gilli, Rennert, Gad, Lejbkowicz, Flavio, Raskin, Leon, Andrulis, Irene L., Ilyushik, Eduard, Ozcelik, Hilmi, Devilee, Peter, Vreeswijk, Maaike P. G., Greene, Mark H., Prindiville, Sheila A., Osorio, Ana, Benítez, Javier, Zikan, Michal, Szabo, Csilla I., Kilpivaara, Outi, Nevanlinna, Heli, Hamann, Ute, Durocher, Francine, Arason, Adalgeir, Couch, Fergus J., Easton, Douglas F. and Chenevix-Trench, Georgia (2007) RAD51 135G->C modifies breast cancer risk among BRCA2 mutation carriers: Results from a combined analysis of 19 studies. American Journal of Human Genetics, 81 6: 1186-1200. doi:10.1086/522611 318   151 Cited 152 times in Scopus152 0
Kassahn, Karin S., Waddell, Nic and Grimmond, Sean M. (2011) Sequencing transcriptomes in toto. Integrative Biology, 3 5: 522-528. doi:10.1039/c0ib00062k 63 2 8 Cited 8 times in Scopus8 0
Alexandrov, Ludmil B., Nik-Zainal, Serena, Wedge, David C., Aparicio, Samuel A. J. R., Behjati, Sam, Biankin, Andrew V., Bignell, Graham R., Bolli, Niccolo, Borg, Ake, Borresen-Dale, Anne-Lise, Boyault, Sandrine, Burkhardt, Birgit, Butler, Adam P., Caldas, Carlos, Davies, Helen R., Desmedt, Christine, Eils, Roland, Eyfjord, Jorunn Erla, Foekens, John A., Greaves, Mel, Hosoda, Fumie, Hutter, Barbara, Ilicic, Tomislav, Imbeaud, Sandrine, Imielinsk, Marcin, Jaeger, Natalie, Jones, David T. W., Jones, David, Knappskog, Stian, Kool, Marcel, Lakhani, Sunil R., Lopez-Otin, Carlos, Martin, Sancha, Munshi, Nikhil C., Nakamura, Hiromi, Northcott, Paul A., Pajic, Marina, Papaemmanuil, Elli, Paradiso, Angelo, Pearson, John V., Puente, Xose S., Raine, Keiran, Ramakrishna, Manasa, Richardson, Andrea L., Richter, Julia, Rosenstiel, Philip, Schlesner, Matthias, Schumacher, Ton N., Span, Paul N., Teague, Jon W., Totoki, Yasushi, Tutt, Andrew N. J., Valdes-Mas, Rafael, van Buuren, Marit M., van 't Veer, Laura, Vincent-Salomon, Anne, Waddell, Nicola, Yates, Lucy R., Zucman-Rossi, Jessica, Futreal, P. Andrew, McDermott, Ultan, Lichter, Peter, Meyerson, Matthew, Grimmond, Sean M., Siebert, Reiner, Campo, Elias, Shibata, Tatsuhiro, Pfister, Stefan M., Campbell, Peter J. and Stratton, Michael R. (2013) Signatures of mutational processes in human cancer. Nature, 500 7463: 415-421. doi:10.1038/nature12477 57   242 Cited 234 times in Scopus234 401
Mann, Karen M., Ward, Jerrold M., Yew, Christopher Chin Kuan, Kovochich, Anne, Dawson, David W., Black, Michael A., Brett, Benjamin T., Sheetz, Benjamin T., Dupuy, Adam J., Chang, David K., Biankin, Andrew V., Waddell, Nicola, Kassahn, Karin S., Grimmond, Sean M., Rust, Alistair G., Adams, David J., Jenkins, Nancy A., Copeland, Neal G., Australian Pancreatic Cancer Genome Initiative, Miller, David K., Wilson, Peter J., Patch, Ann-Marie, Song, Sarah, Harliwong, Ivon, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi, Gongora, Milena, Anderson, Matthew, Holmes, Oliver, Leonard, Conrad, Taylor, Darrin, Wood, Scott, Xu, Christina, Nones, Katia, Fink, J. Lynn, Christ, Angelika, Bruxner, Tim, Cloonan, Nicole, Newell, Felicity and Pearson, John V. (2012) Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma. Proceedings of the National Academy of Sciences of the United States of America, 109 16: 5934-5941. doi:10.1073/pnas.1202490109 101   47 Cited 49 times in Scopus49 9
Kassahn, Karin S., Holmes, Oliver, Nones, Katia, Patch, Ann-Marie, Miller, David K., Christ, Angelika K., Harliwong, Ivon, Bruxner, Timothy J., Xu, Qinying, Anderson, Matthew, Wood, Scott, Leonard, Conrad, Taylor, Darrin, Newell, Felicity, Song, Sarah, Idrisoglu, Senel, Nourse, Craig, Nourbakhsh, Ehsan, Manning, Suzanne, Wani, Shivangi, Steptoe, Anita, Pajic, Marina, Cowley, Mark J., Pinese, Mark, Chang, David K., Gill, Anthony J., Johns, Amber L., Wu, Jianmin, Wilson, Peter J., Fink, Lynn, Biankin, Andrew V., Waddell, Nicola, Grimmond, Sean M. and Pearson, John V. (2013) Somatic point mutation calling in low cellularity tumors. PloS One, 8 11: e74380.1-e74380.10. doi:10.1371/journal.pone.0074380 68   1 Cited 1 times in Scopus1 2
Grimont, Adrien, Pinho, Andreia V., Cowley, Mark J., Augereau, Cécile, Mawson, Amanda, Giry-Laterriere, Marc, Van den Steen, Géraldine, Waddell, Nicola, Pajic, Marina, Sempoux, Christine, Wu, Jianmin, Grimmond, Sean M., Biankin, Andrew V., Lemaigre, Frédéric P., Rooman, Ilse and Jacquemin, Patrick (2014) SOX9 regulates ERBB signalling in pancreatic cancer development. Gut, 43 8: 1361-1361. doi:10.1136/gutjnl-2014-307075 15   0 1
Waddell, N, Arnold, J, Cocciardi, S, da Silva, L, Marsh, A, Riley, J, Johnstone, CN, Orloff, M, Assie, G, Eng, C, Reid, L, Keith, P, Yan, M, Fox, S, Devilee, P, Godwin, AK, Hogervorst, FBL, Couch, F, Grimmond, S, Flanagan, JM, Khanna, K, Simpson, PT, Lakhani, SR, Chenevix-Trench, G and kConFab Investigators (2010) Subtypes of familial breast tumours revealed by expression and copy number profiling. Breast Cancer Research And Treatment, 123 3: 661-677. doi:10.1007/s10549-009-0653-1 112   32 Cited 36 times in Scopus36 0
Johnson, Julie K., Waddell, Nic, kConFab Investigators and Chenevix-Trench, Georgia (2012) The application of nonsense-mediated mRNA decay inhibition to the identification of breast cancer susceptibility genes. BMC Cancer, 12 246: 246.1-246.12. doi:10.1186/1471-2407-12-246 65   Cited 0 times in Scopus0 1
Cloonan, N., Waddell, N. and Grimmond, S. M. (2010) The clinical potential and challenges of sequencing cancer genomes for personalized medical genomics. I Drugs, 13 11: 778-781. 71   3 Cited 4 times in Scopus4
Chan, P, Moller, A, Liu, MCP, Sceneay, JE, Wong, CSF, Waddell, N, Huang, KT, Dobrovic, A, Millar, EKA, O'Toole, SA, McNeil, CM, Sutherland, RL, Bowtell, DD and Fox, SB (2011) The expression of the ubiquitin ligase SIAH (seven in absentia homolog) 2 is mediated through gene copy number in breast cancer and is associated with a basal-like phenotype and p53 expression. Breast Cancer Research, 13 1: R19. doi:10.1186/bcr2828 38   15 Cited 14 times in Scopus14 1
Vargas, Ana Cristina, Simpson, Peter T., McCart Reed, Amy E., Smart, Chanel, Waddell, Nic, Lane, Annette and Lakhani, Sunil (2011). The role of Type XI Collagen in Breast Cancer Progression. In: LICR Translational Oncology Conference, Melbourne, Australia, (). 24-26 October 2011. 64  
Cowley, Mark J., Chang, David K., Pajic, Marina, Johns, Amber L., Waddell, Nicola, Grimmond, Sean M. and Biankin, Andrew V. (2013) Understanding pancreatic cancer genomes. Journal of Hepato-Biliary-Pancreatic Sciences, 20 6: 549-556. doi:10.1007/s00534-013-0610-6 26   6 Cited 4 times in Scopus4 0
Walker, LC, Thompson, BA, Waddell, N, Grimmond, SM, Spurdle, AB and KConFab Investigators (2010) Use of DNA-damaging agents and RNA pooling to assess expression profiles associated with BRCA1 and BRCA2 mutation status in familial breast cancer patients. PLoS Genetics, 6 2: e1000850-1-e1000850-9. doi:10.1371/journal.pgen.1000850 60 3 2 Cited 2 times in Scopus2 0
Walker, Logan C., Waddell, Nic, Ten Haaf, Anette, kConFab Investigators, Grimmond, Sean and Spurdle, Amanda B. (2008) Use of expression data and the CGEMS genome-wide breast cancer association study to identify genes that may modify risk in BRCA1/2 mutation carriers. Breast Cancer Research and Treatment, 112 2: 229-236. doi:10.1007/s10549-007-9848-5 30   6 Cited 3 times in Scopus3 3