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Whiley, David M. and Sloots, Theo P. (2005) A 5 '-nuclease real-time reverse transcriptase-polymerase chain reaction assay for the detection of a broad range of influenza A subtypes, including H5N1. Diagnostic Microbiology and Infectious Disease, 53 4: 335-337. doi:10.1016/j.diagmicrobio.2005.08.002 159   36 Cited 35 times in Scopus35 0
Lum, G., Freeman, K., Nguyen, N. L., Limnios, E. A., Tabrizi, S. M., Carter, I., Chambers, I. W., Sloots, T. P., Whiley, D. M., Garland, S. M. and Tapsall, J. (2005) A cluster of culture positive gonococcal infections but with false negative cppB gene based PCR. Sexually Transmitted Infections, 81 5: 400-402. doi:10.1136/sti.2004.013805 127   26 Cited 24 times in Scopus24 0
Syrmis, Melanie W., Kidd, Timothy J., Moser, Ralf J., Ramsay, Kay A., Gibson, Kristen M., Anuj, Snehal, Bell, Scott C., Wainwright, Claire E., Grimwood, Keith, Nissen, Michael, Sloots, Theo P. and Whiley, David M. (2014) A comparison of two informative SNP-based strategies for typing Pseudomonas aeruginosa isolates from patients with cystic fibrosis. BMC Infectious Diseases, 14 1: 307.1-307.8. doi:10.1186/1471-2334-14-307 45   1 Cited 1 times in Scopus1 3
Rockett R.J., Bialasiewicz S., Mhango L., Gaydon J., Holding R., Whiley D.M., Lambert S.B., Ware R.S., Nissen M.D., Grimwood K. and Sloots T.P. (2015) Acquisition of human polyomaviruses in the first 18 months of life. Emerging Infectious Diseases, 21 2: 365-367. doi:10.3201/eid2102.141429 10   0 Cited 0 times in Scopus0 0
Goire, Namraj, Nissen, Michael D., LeCornec, Genevera M., Sloots, Theo P. and Whiley, David, M. (2008) A duplex Neisseria gonorrhoeae real-time polymerase chain reaction assay targeting the gonoccoccal porA pseudogene and multicopy opa genes. Diagnostic Microbiology and Infectious Disease, 61 1: 6-12. doi:10.1016/j.diagmicrobio.2007.12.007 39   28 Cited 27 times in Scopus27 0
Whiley, David M., Jacobsson, Susanne, Tapsall, John W., Nissen, Michael D., Sloots, Theo P. and Unemo, Magnus (2010) Alterations of the pilQ gene in Neisseria gonorrhoeae are unlikely contributors to decreased susceptibility to ceftriaxone and cefixime in clinical gonococcal strains. Journal of Antimicrobial Chemotherapy, 65 12: 2543-2547. doi:10.1093/jac/dkq377 61   21 Cited 17 times in Scopus17 0
Trembizki, E., Lahra, M., Stevens, K., Freeman, K., Hogan, T., Hogg, G., Lawrence, A., Limnios, A., Pearson, J., Smith, H., Nissen, M., Sloots, T. and Whiley, D.M. (2013) A national quality assurance survey of Neisseria gonorrhoeae testing. Journal of Medical Microbiology, 63 PART 1: 45-49. doi:10.1099/jmm.0.065094-0 33   6 Cited 6 times in Scopus6 0
Whiley, D. M., Buda, P. J., Bayliss, J., Cover, L., Bates, J. and Sloots, T. P. (2004) A new confirmatory Neisseria gonorrhoeae real-time PCR assay targeting the porA pseudogene. European Journal of Clinical Microbiology & Infectious Diseases, 23 9: 705-710. doi:10.1007/s10096-004-1170-0 231   35 Cited 37 times in Scopus37 0
Bialasiewicz, Seweryn, Whiley, David M., Lambert, Stephen B., Wang, David, Nissen, Michael D. and Sloots, Theo P. (2007) A newly reported human polyomavirus, KI virus, is present in the respiratory tract of Australian children. Journal of Clinical Virology, 40 1: 15-18. doi:10.1016/j.jcv.2007.07.001 171   37 Cited 41 times in Scopus41 0
Barnard, R., Lai, R., Pearson, D., Phua, Z. Y., Whiley, D., Sloots, T. and Barnett, G. (2009). A new multiplexable, quantitative, real-time system for detection of nucleic acids. In: Mike L. Taussig, New Biotechnology. Abstracts of the 14th European Congress on Biotechnology. 14th European Congress on Biotechnology, Barcelona, Spain, (S17-S18). 13-16 September 2009. doi:10.1016/j.nbt.2009.06.044 84   0 0
Liang, Fang, Arora, Neetika, Zhang, Kang Liang, Yeh, David Che Cheng, Lai, Richard, Pearson, Darnley, Barnett, Graeme, Whiley, David, Sloots, Theo, Corrie, Simon R. and Barnard, Ross T. (2013). A new, multiplex, quantitative real-time polymerase chain reaction system for nucleic acid detection and quantification. In Dmitry M. Kolpashchikov and Yulia V. Gerasimova (Ed.), Nucleic acid detection: methods and protocols (pp. 51-68) New York, NY, United States: Humana Press. doi:10.1007/978-1-62703-535-4_4 123   1 Cited 1 times in Scopus1 0
Goire, Namraj, Kattenbelt, Jacqueline A., Gould, Allan R., Nissen, Michael D., Sloots, Theo P. and Whiley, David (2009) An example of competitive inhibition in a monoplex real-time PCR as a cause of reduced fluorescent signal response. Pathology, 41 6: 607-609. doi:10.1080/00313020903071488 153   0 Cited 0 times in Scopus0 0
Rockett, Rebecca J., Bialasiewicz, Seweryn, Whiley, David M., Bletchly, Cheryl, Faux, Cassandra E., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theodorus P. (2009) A novel duplex real-time reverse transcription PCR Assay for the detection of influenza A and the novel influenza A(H1N1)strain.. Viruses, 1 3: 1204-1208. doi:10.3390/v1031204 94   2 Cited 2 times in Scopus2 0
Bialasiewicz, S., Whiley, D. M., Buhrer-Skinner, M., Bautista, C., Barker, K., Aitken, S., Gordon, R., Muller, R., Lambert, S. B., Debattista, J., Nissen, M. D. and Sloots, T. P. (2009) A novel gel-based method for self collection and ambient temperature postal transport of urine for PCR detection of Chlamydia trachomatis.. Sexually Transmitted Infections, 85 2: 102-105. doi:10.1136/sti.2008.032607 104   19 Cited 18 times in Scopus18 0
Tapsall, John, David Whiley and Sloots, Theodorus P. (2006) Applications of molecular testing in clinical laboratories for the diagnosis and control of gonorrhea. Future Microbiology, 1 3: 317-324. doi:10.2217/17460913.1.3.317 115   11 Cited 12 times in Scopus12 0
Guy, R.J., Natoli, L., Ward, J., Causer, L., Hengel, B., Whiley, D., Tabrizi, S.N., Donovan, B., Fairley, C.K., Badman, S.B., Tangey, A., Wand, H., Shephard, M., Regan, D.G., Wilson, D., Anderson, D. and Kaldor, J.M. (2013) A randomised trial of point-of-care tests for chlamydia and gonorrhoea infections in remote Aboriginal communities: Test, Treat ANd GO- the " TTANGO" trial protocol. BMC Infectious Diseases, 13 485: 1-9. doi:10.1186/1471-2334-13-485 21   6 Cited 5 times in Scopus5 1
Whiley, David M., LeCornec, Genevera M., Mackay, Ian M., Siebert, David J. and Sloots, Theo P. (2002) A real-time PCR assay for the detection of Neisseria gonorrhoeae by LightCycler. Diagnostic Microbiology And Infectious Disease, 42 2: 85-89. doi:10.1016/S0732-8893(01)00326-1 135   22 Cited 24 times in Scopus24 0
Whiley, David M., Buda, Philip P., Freeman, Kevin, Prattle, Neville I., Bates, John and Sloots, Theo P. (2005) A real-time PCR assay for the detection of Neisseria gonorrhoeae in genital and extragenital specimens. Diagnostic Microbiology and Infectious Disease, 52 1: 1-5. doi:10.1016/j.diagmicrobio.2004.12.011 77   20 Cited 24 times in Scopus24 0
Rockett, Rebecca J., Tozer, Sarah J., Peatey, Chris, Bialasiewicz, Seweryn, Whiley, David M., Nissen, Michael D., Trenholme, Katharine, Mc Carthy, James S. and Sloots, Theo P. (2011) A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers. Malaria Journal, 10 48: 48-1-48-6. doi:10.1186/1475-2875-10-48 135   10 Cited 11 times in Scopus11 0
Alsaleh, A.N., Grimwood, K., Sloots, T.P. and Whiley, D.M. (2014) A retrospective performance evaluation of an adenovirus real-time PCR assay. Journal of Medical Virology, 86 5: 795-801. doi:10.1002/jmv.23844 25   0 Cited 0 times in Scopus0 0
Syrmis, Melanie W., Whiley, David M., Thomas, Marion, Mackay, Ian M., Williamson, Jeanette, Siebert, David J., Nissen, Michael D. and Sloots, Theo P. (2004) A sensitive, specific, and cost-effective multiplex reverse transcriptase-PCR assay for the detection of seven common respiratory viruses in respiratory samples. Journal of Molecular Diagnostics, 6 2: 125-131. doi:10.1016/S1525-1578(10)60500-4 114   116 Cited 128 times in Scopus128 0
Whiley, David M., Faux, Cassandra E., Bialasiewicz, Seweryn, Gould, Allan R., Lambert, Stephen B., Nissen, Michael D. and Sloots, Theo P. (2010) A simple approach for preparing real-time PCR positive reaction controls for rare or emerging viruses. Journal of Clinical Virology, 48 3: 193-197. doi:10.1016/j.jcv.2010.03.022 74   6 Cited 6 times in Scopus6 0
Cox, Hannah C., Jacob, Kevin, Whiley, David M., Bletchly, Cheryl, Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2013) Bordetella holmesii and pertussis diagnosis: authors' reply. Pathology, 45 5: 532-532. doi:10.1097/PAT.0b013e3283639c0d 33   0 Cited 0 times in Scopus0 1
Whiley, D. M. and Sloots, T. P. (2006). Clinical Virology. In M. Tevfik Dorak (Ed.), Real-Time PCR 1 ed. (pp. 231-276) UK: Taylor & Francis. 62  
Mackay, Ian M., Gardam, Tim, Arden, Katherine E., McHardy, Suzi, Whiley, David M., Crisante, Erin and Sloots, Theo P. (2003) Co-detection and discrimination of six human herpesviruses by multiplex PCR-ELAHA. Journal of Clinical Virology, 28 3: 291-302. doi:10.1016/S1386-6532(03)00072-6 127   9 Cited 6 times in Scopus6 0
Lambert, Stephen B., Whiley, David M., O'Neill, Nicholas T., Andrews, Emily C., Canavan, Fiona M., Bletchly, Cheryl, Siebert, David J., Sloots, Theo P. and Nissen, Michael D. (2008) Comparing nose-throat swabs and nasopharyngeal aspirates collected from children with symptoms for respiratory virus identification using real-time polymerase chain reaction. Pediatrics, 122 3: e615-e620. doi:10.1542/peds.2008-0691 93   54 Cited 59 times in Scopus59 0
Syrmis, M. W., Moser, R. J., Whiley, D. M., Vaska, V., Coombs, G. W., Nissen, M. D., Sloots, T. P. and Nimmo, G. R. (2011) Comparison of a multiplexed MassARRAY system with real-time allele-specific PCR technology for genotyping of methicillin-resistant Staphylococcus aureus. Clinical Microbiology and Infection, 17 12: 1804-1810. doi:10.1111/j.1469-0691.2011.03521.x 99   17 Cited 22 times in Scopus22 1
Willner, Dana, Daly, Joshua, Whiley, David, Grimwood, Keith, Wainwright, Claire E. and Hugenholtz, Philip (2012) Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples. PLoS One, 7 4: e34605.1-e34605.12. doi:10.1371/journal.pone.0034605 118   20 Cited 21 times in Scopus21 3
Ye, S., Lambert, S.B., Grimwood, K., Roczo-Farkas, S., Nimmo, G.R., Sloots, T.P., Kirkwood, C.D. and Whiley, D.M. (2015) Comparison of test specificities of commercial antigen-based assays and in-house PCR methods for detection of rotavirus in stool specimens. Journal of Clinical Microbiology, 53 1: 295-297. doi:10.1128/JCM.02251-14 12   0 Cited 0 times in Scopus0 0
Bromhead, Collette, Miller, Amanda, Jones, Mark and Whiley, David (2013) Comparison of the cobas 4800 CT/NG test with culture for detecting neisseria gonorrhoeae in genital and nongenital specimens in a low-prevalence population in New Zealand. Journal of Clinical Microbiology, 51 5: 1505-1509. doi:10.1128/JCM.03223-12 33   5 Cited 9 times in Scopus9 0
Whiley, David M. and Sloots, Theo P. (2005) Comparison of three in-house multiplex PCR assays for the detection of Neisseria gonorrhoeae and Chlamydia trachomatis using real-time and conventional detection methodologies. Pathology, 37 5: 364-370. doi:10.1080/00313020500254552 206   18 Cited 19 times in Scopus19 0
Tapsall, J. W., Limnios, E. A., Nguyen, N. L., Carter, I., Lum, G., Freeman, K., Tabrizi, S. N., Garland, S. M., Whiley, D. M., Sloots, T. P. and Chambers, I. W. (2005) Cryptic-plasmid-free gonococci may contribute to failure of cppB gene-based assays to confirm results of BD ProbeTEC PCR for identification of Neisseria gonorrhoeae. Journal of Clinical Microbiology, 43 4: 2036-2037. doi:10.1128/JCM.43.4.2036-2037.2005 62   13 Cited 12 times in Scopus12 0
Whiley, David M., Mackay, Ian M., Syrmis, Melanie W., Witt, Michael J. and Sloots, Theo P. (2004) Detection and differentiation of herpes simplex virus types 1 and 2 by a duplex LightCycler PCR that incorporates an internal control PCR reaction. Journal of Clinical Virology, 30 1: 32-38. doi:10.1016/j.jcv.2003.08.003 129   19 Cited 24 times in Scopus24 0
Whiley, David M., Mackay, Ian M. and Sloots, Theo P. (2001) Detection and differentiation of human polyomaviruses JC and BK by LightCycler PCR. Journal of Clinical Microbiology, 39 12: 4357-4361. doi:10.1128/JCM.39.12.4357-4361.2001 85   61 Cited 73 times in Scopus73 0
Whiley, David M., LeCornec, Genevera M., Baddeley, Annette, Savill, John, Syrmis, Melanie W., Mackay, Ian M., Siebert, David J., Burns, Dominic, Nissen, Michael and Sloots, Theo P. (2004) Detection and differentiation of Plasmodium species by polymerase chain reaction and colorimetric detection in blood samples of patients with suspected malaria. Diagnostic Microbiology And Infectious Disease, 49 1: 25-29. doi:10.1016/j.diagmicrobio.2003.10.014 79   12 Cited 12 times in Scopus12 0
Bialasiewicz, Seweryn, Whiley, David M., Lambert, Stephen B., Nissen, Michael D. and Sloots, Theo P. (2009) Detection of BK, JC, WU, or KI polyomaviruses in faecal, urine, blood, cerebrospinal fluid and respiratory samples. Journal of Clinical Virology, 45 3: 249-254. doi:10.1016/j.jcv.2009.05.002 85   44 Cited 45 times in Scopus45 0
Tozer, Sarah J., Lambert, Stephen B., Whiley, David M., Bialasiewicz, Seweryn, Lyon, Michael J, Nissen, Michael D. and Sloots, Theo P. (2009) Detection of Human Bocavirus in respiratory, fecal and blood samples by real-time PCR. Journal of Medical Virology, 81 3: 488-493. doi:10.1002/jmv.21409 52   38 Cited 40 times in Scopus40 0
Whiley, David M., Syrmis, Melanie W., Mackay, Ian M. and Sloots, Theo P. (2002) Detection of human respiratory syncytial virus in respiratory samples by LightCycler reverse transcriptase PCR. Journal of Clinical Microbiology, 40 12: 4418-4422. doi:10.1128/JCM.40.12.4418-4422.2002 97   30 Cited 33 times in Scopus33 0
Whiley, D. M., Syrmis, M. W., Mackay, I. M. and Sloots, T. P. (2003) Detection of Influenza type A virus by LightCycler RT-PCR. Australian Journal of Medical Science, 24 3: 136-139. 162   Cited 3 times in Scopus3
Whiley, David M., Crisante, Michelle E., Syrmis, Melanie W., Mackay, Ian M. and Sloots, Theo P. (2003) Detection of Neisseria meningitidis by LightCycler PCR. Pathology, 35 4: 347-349. doi:10.1080/0031302031000152874 66   3 Cited 3 times in Scopus3 0
Whiley, David M ., Crisante, Michelle E., Syrmis, Melanie W., Mackay, Ian M. and Sloots, Theo P. (2003) Detection of Neisseria Meningitidis in clinical samples by a duplex read-time PCR targeting the porA and ctrA Genes. Molecular Diagnosis, 7 3: 141-145. 64   Cited 12 times in Scopus12
Whiley, D. M., Crisante, M. E., Syrmis, M. E., Mackay, I. M. and Sloots, T. P. (2003) Detection of Neisseria Meningitidis in clinical samples by a duplex real-time PCR targeting the porA and ctrA genes. Molecular Diagnostics, 7 3/4: 141-145. 84   Cited 12 times in Scopus12
Whiley, David M., Bialasiewicz, Seweryn, Bletchly, Cheryl, Faux, Cassandra E., Harrower, Bruce, Gould, Allan R., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2009) Detection of novel influenza A(H1N1) virus by real-time RT-PCR.. Journal of Clinical Virology, 45 3: 203-204. doi:10.1016/j.jcv.2009.05.032 75   59 Cited 68 times in Scopus68 0
Rockett, Rebecca J., Sloots, Theo P., Bowes, Sharleen, O'Neill, Nicholas, Ye, Suifang, Robson, Jenny, Whiley, David M., Lambert, Stephen B., Wang, David, Nissen, Michael D. and Bialasiewicz, Seweryn (2013) Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid. PLoS ONE, 8 5: e62764.1-e62764.9. doi:10.1371/journal.pone.0062764 35   6 Cited 6 times in Scopus6 0
Bialasiewicz, S., Whiley, D. M., Lambert, S. B., Gould, A., Nissen, M. D. and Sloots, T. P. (2007) Development and evaluation of real-time PCR assays for the detection of the newly identified KI and WU polyomaviruses. Journal of Clinical Virology, 40 1: 9-14. doi:10.1016/j.jcv.2007.07.015 46   42 Cited 43 times in Scopus43 0
Rahimi, Frashta, Goire, Namraj, Guy, Rebecca, Kaldor, John M., Ward, James, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2013) Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?. Sexual Health, 10 4: 299-304. doi:10.1071/SH12108 29   0 Cited 0 times in Scopus0 3
Whiley, David M., Limnios, E. Athena, Ray, Sanghamitra, Sloots, Theo P. and Tapsall, John W. (2007) Diversity of penA alterations and subtypes in Neisseria gonorrhoeae strains from Sydney, Australia, that are less susceptible to ceftriaxone. Antimicrobial Agents And Chemotherapy, 51 9: 3111-3116. doi:10.1128/AAC.00306-07 50   67 Cited 67 times in Scopus67 0
Sloots, T. P., Whiley, D. M., Lambert, S. B. and Nissen, M. D. (2008) Emerging respiratory agents: New viruses for old diseases?. Journal of Clinical Virology, 42 3: 233-243. doi:10.1016/j.jcv.2008.03.002 62   54 Cited 58 times in Scopus58 0
Goire, Namraj, Ohnishi, Makoto, Limnios, Athena E., Lahra, Monica M., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2012) Enhanced gonococcal antimicrobial surveillance in the era of ceftriaxone resistance: A real-time PCR assay for direct detection of the Neisseria gonorrhoeae H041 strain. Journal of Antimicrobial Chemotherapy, 67 4: 902-905. doi:10.1093/jac/dkr549 64   10 Cited 11 times in Scopus11 1
Goire, Namraj, Freeman, Kevin, Tapsall, John W., Lambert, Stephen B., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2011) Enhancing gonococcal antimicrobial resistance surveillance: a real-time PCR assay for detection of penicillinase-producing Neisseria gonorrhoeae by use of noncultured clinical samples. Journal of clinical microbiology, 49 2: 513-518. doi:10.1128/JCM.02024-10 101   13 Cited 13 times in Scopus13 0

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