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Maetschke, S., Gallagher, M. and Boden, M. (2007). A comparison of sequence kernels for localization prediction of transmembrane proteins. In: D. Fogel, Computational Intelligence in Bioinformatics and Computational Biology 2007 (CIBCB 2007). IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology 2007 (CIBCB 2007), Honolulu, Hawaii, (367-372). 1-5 April 2007. 118   0 Cited 1 times in Scopus1
Simonsen, Martin, Maetschke, Stefan R. and Ragan, Mark A. (2012) Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling. Bioinformatics, 28 6: 851-857. doi:10.1093/bioinformatics/btr720 36   1 Cited 2 times in Scopus2 0
Maetschke, Stefan R., Kassahn, Karin S., Dunn, Jasmyn A., Han, Siew-Ping, Curley, Eva Z., Stacey, Katryn J. and Ragan, Mark A. (2010) A visual framework for sequence analysis using n-grams and spectral rearrangement. Bioinformatics, 26 6: 737-744. doi:10.1093/bioinformatics/btq042 76   7 Cited 9 times in Scopus9 0
Maetschke, S. R., Towsey, M. and Boden, M. B. (2005). BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction. In: Y.P. Phoebe Chen and L. Wong, Proceedings of the 3rd Asia Pacific Bioinformatics Conference. 3rd Asia Pacific Bioinformatics Conference, Singapore, (141-150). 17-21 January 2005. 58  
Maetschke, Stefan R. and Ragan, Mark A. (2014) Characterizing cancer subtypes as attractors of Hopfield networks. Bioinformatics, 30 9: 1273-1279. doi:10.1093/bioinformatics/btt773 25   1 Cited 1 times in Scopus1 6
Davis, L., Hawkins, J. C., Maetschke, S. R. and Boden, M B (2006). Comparing SVM sequence kernels: A protein subcellular localization theme. In: M. Boden and T. Bailey, Proceedings of the 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006). 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006), Hobart, Tas, Australia, (39-47). 4 December, 2006. 59  
Arieshanti, I., Boden, M., Maetschke, S and Buske, F. A. (2009). Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes. In: Proceedings of the 2009 IEEE Computational Intelligence for Bioinformatics and Computational Biology. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology 2009, Nashville, Tennessee, U.S.A., (46-52). 30 March - 2 April , 2009. doi:10.1109/CIBCB.2009.4925706 65   0 Cited 0 times in Scopus0 0
Watson, J., Maetschke, S. and Wiles, J. (2007). Dsweep: A lightweight tool for distributed parameter sweeps. In: Nigel Crook and Tjeerd olde Scheper, Proceedings of the Seventh International Workshop on Information Processing in Cells and Tissues 2007 (IPCAT 2007). Seventh International Workshop on Information Processing in Cells and Tissues (IPCAT 2007), Oxford, United Kingdom, (400-408). 29-31 August 2007. 127  
Wakabayashi, M., Hawkins, J. C., Maetschke, S. R. and Boden, M. B. (2005). Exploiting sequence dependencies in the prediction of peroxisomal proteins. In: M. Gallagher, J. Hogan and F. Maire, Intelligent Data Engineering and Automated Learning - IDEAL2005. Intelligent Data Engineering and Automated Learning - IDEAL2005, Brisbane, Australia, (454-461). 6-8 July 2005. 69   3 Cited 3 times in Scopus3
Maetschke, Stefan R. and Yuan, Zheng (2009) Exploiting structural and topological information to improve prediction of RNA-protein binding sites. BMC Bioinformatics, 10 341.1-341.14. doi:10.1186/1471-2105-10-341 58   21 Cited 25 times in Scopus25 0
Maetschke, Stefan R., Simonsen, Martin, Davis, Melissa J. and Ragan, Mark A. (2012) Gene Ontology-driven inference of protein-protein interaction using inducers. Bioinformatics, 28 1: 69-75. doi:10.1093/bioinformatics/btr610 47   9 Cited 9 times in Scopus9 1
Madhamshettiwar, Piyush B., Maetschke, Stefan R., Davis, Melissa J., Reverter, Antonio and Ragan, Mark A. (2012) Gene regulatory network inference: Evaluation and application to ovarian cancer allows the prioritization of drug targets. Genome Medicine, 4 5: 41.1-41.15. doi:10.1186/gm340 57 1 19 Cited 27 times in Scopus27 11
Maetschke, S. R., Boden, M B and Gallagher, M R (2006). Higher order HMMs for localization prediction of transmembrance proteins. In: M. Boden and T. Bailey, Proceedings of the 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006). 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006), Hobart, Australia, (49-53). 4 December, 2006. 55  
Hawkins, J., Mahony, D., Maetschke, S., Wakabayashi, M., Teasdale, R. D. and Boden, M. (2007) Identifying novel peroxisomal proteins. Proteins: Structure Function and Bioinformatics, 69 3: 606-616. doi:10.1002/prot.21420 71   11 Cited 12 times in Scopus12 6
Madhamshettiwar, Piyush B., Maetschke, Stefan R., Davis, Melissa J., Reverter, Antonio and Ragan, Mark A. (2014) INsPeCT: INtegrative Platform for Cancer Transcriptomics. Cancer Informatics, 13 59-66. doi:10.4137/CIN.S13630 32   Cited 0 times in Scopus0 15
Buske, Fabian A., Maetschke, Stefan and Boden, Mikael (2009) It's about time: Signal recognition in staged models of protein translocation. Pattern Recognition, 42 4: 567-574. doi:10.1016/j.patcog.2008.09.020 59   0 Cited 0 times in Scopus0 0
Wang, Chenwei, Taciroglu, Alperen, Maetschke, Stefan R., Nelson, Colleen C., Ragan, Mark A. and Davis, Melissa J. (2012) mCOPA: analysis of heterogeneous features in cancer expression data. Journal of Clinical Bioinformatics, 2 1: 22.1-22.11. doi:10.1186/2043-9113-2-22 54 2 Cited 7 times in Scopus7 2
Wang, Chenwei, Taciroglu, Alperen, Maetschke, Stefan, Nelson, Colleen, Ragan, Mark and Davis, Melissa (2013). mCOPA : analysis of heterogeneous features in cancer expression data. In: Abstracts of the Prostate Cancer World Congress and 14th Australasian Prostate Cancer Conferenc. The Prostate Cancer World Congress and 14th Australasian Prostate Cancer Conference, Melbourne, VIC Australia, (33-34). 6-10 August 2013. doi:10.1111/bju.12293 32   0 0
Madhamshettiwar, Piyush B., Maetschke, Stefan R., Davis, Melissa J. and Ragan, Mark A. (2013) RMaNI: Regulatory module network inference framework. BMC Bioinformatics, 14 Suppl. 16: S14.1-S14.10. doi:10.1186/1471-2105-14-S16-S14 34   0 Cited 1 times in Scopus1 3
Maetschke, Stefan R., Madhamshettiwar, Piyush B., Davis, Melissa J. and Ragan, Mark A. (2014) Supervised, semi-supervised and unsupervised inference of gene regulatory networks. Briefings in Bioinformatics, 15 2: 195-211. doi:10.1093/bib/bbt034 35   4 Cited 7 times in Scopus7 4
Maetschke, Stefan (2007). Topological models of transmembrane proteins for subcellular localization prediction PhD Thesis, School of Information Technology and Electrical Engineering, University of Queensland. 250 14