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Maetschke, S., Gallagher, M. and Boden, M. (2007). A comparison of sequence kernels for localization prediction of transmembrane proteins. In: D. Fogel, Computational Intelligence in Bioinformatics and Computational Biology 2007 (CIBCB 2007). IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology 2007 (CIBCB 2007), Honolulu, Hawaii, (367-372). 1-5 April 2007. 111   0 Cited 1 times in Scopus1
Simonsen, Martin, Maetschke, Stefan R. and Ragan, Mark A. (2012) Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling. Bioinformatics, 28 6: 851-857. doi:10.1093/bioinformatics/btr720 34   0 Cited 1 times in Scopus1 0
Maetschke, Stefan R., Kassahn, Karin S., Dunn, Jasmyn A., Han, Siew-Ping, Curley, Eva Z., Stacey, Katryn J. and Ragan, Mark A. (2010) A visual framework for sequence analysis using n-grams and spectral rearrangement. Bioinformatics, 26 6: 737-744. doi:10.1093/bioinformatics/btq042 74   7 Cited 9 times in Scopus9 0
Maetschke, S. R., Towsey, M. and Boden, M. B. (2005). BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction. In: Y.P. Phoebe Chen and L. Wong, Proceedings of the 3rd Asia Pacific Bioinformatics Conference. 3rd Asia Pacific Bioinformatics Conference, Singapore, (141-150). 17-21 January 2005. 57  
Maetschke, Stefan R. and Ragan, Mark A. (2014) Characterizing cancer subtypes as attractors of Hopfield networks. Bioinformatics, 30 9: 1273-1279. doi:10.1093/bioinformatics/btt773 23   0 Cited 1 times in Scopus1 6
Davis, L., Hawkins, J. C., Maetschke, S. R. and Boden, M B (2006). Comparing SVM sequence kernels: A protein subcellular localization theme. In: M. Boden and T. Bailey, Proceedings of the 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006). 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006), Hobart, Tas, Australia, (39-47). 4 December, 2006. 58  
Arieshanti, I., Boden, M., Maetschke, S and Buske, F. A. (2009). Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes. In: Proceedings of the 2009 IEEE Computational Intelligence for Bioinformatics and Computational Biology. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology 2009, Nashville, Tennessee, U.S.A., (46-52). 30 March - 2 April , 2009. doi:10.1109/CIBCB.2009.4925706 63   0 Cited 0 times in Scopus0 0
Watson, J., Maetschke, S. and Wiles, J. (2007). Dsweep: A lightweight tool for distributed parameter sweeps. In: Nigel Crook and Tjeerd olde Scheper, Proceedings of the Seventh International Workshop on Information Processing in Cells and Tissues 2007 (IPCAT 2007). Seventh International Workshop on Information Processing in Cells and Tissues (IPCAT 2007), Oxford, United Kingdom, (400-408). 29-31 August 2007. 123  
Wakabayashi, M., Hawkins, J. C., Maetschke, S. R. and Boden, M. B. (2005). Exploiting sequence dependencies in the prediction of peroxisomal proteins. In: M. Gallagher, J. Hogan and F. Maire, Intelligent Data Engineering and Automated Learning - IDEAL2005. Intelligent Data Engineering and Automated Learning - IDEAL2005, Brisbane, Australia, (454-461). 6-8 July 2005. 67   3 Cited 3 times in Scopus3
Maetschke, Stefan R. and Yuan, Zheng (2009) Exploiting structural and topological information to improve prediction of RNA-protein binding sites. BMC Bioinformatics, 10 341.1-341.14. doi:10.1186/1471-2105-10-341 57   21 Cited 25 times in Scopus25 0
Maetschke, Stefan R., Simonsen, Martin, Davis, Melissa J. and Ragan, Mark A. (2012) Gene Ontology-driven inference of protein-protein interaction using inducers. Bioinformatics, 28 1: 69-75. doi:10.1093/bioinformatics/btr610 44   7 Cited 8 times in Scopus8 1
Madhamshettiwar, Piyush B., Maetschke, Stefan R., Davis, Melissa J., Reverter, Antonio and Ragan, Mark A. (2012) Gene regulatory network inference: Evaluation and application to ovarian cancer allows the prioritization of drug targets. Genome Medicine, 4 5: 41.1-41.15. doi:10.1186/gm340 56 1 18 Cited 26 times in Scopus26 13
Maetschke, S. R., Boden, M B and Gallagher, M R (2006). Higher order HMMs for localization prediction of transmembrance proteins. In: M. Boden and T. Bailey, Proceedings of the 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006). 2006 Workshop on Intelligent Systems for Bioinformatics (WISB 2006), Hobart, Australia, (49-53). 4 December, 2006. 52  
Hawkins, J., Mahony, D., Maetschke, S., Wakabayashi, M., Teasdale, R. D. and Boden, M. (2007) Identifying novel peroxisomal proteins. Proteins: Structure Function and Bioinformatics, 69 3: 606-616. doi:10.1002/prot.21420 65   10 Cited 11 times in Scopus11 6
Madhamshettiwar, Piyush B., Maetschke, Stefan R., Davis, Melissa J., Reverter, Antonio and Ragan, Mark A. (2014) INsPeCT: INtegrative Platform for Cancer Transcriptomics. Cancer Informatics, 13 59-66. doi:10.4137/CIN.S13630 24   Cited 0 times in Scopus0 12
Buske, Fabian A., Maetschke, Stefan and Boden, Mikael (2009) It's about time: Signal recognition in staged models of protein translocation. Pattern Recognition, 42 4: 567-574. doi:10.1016/j.patcog.2008.09.020 57   0 Cited 0 times in Scopus0 0
Wang, Chenwei, Taciroglu, Alperen, Maetschke, Stefan R., Nelson, Colleen C., Ragan, Mark A. and Davis, Melissa J. (2012) mCOPA: analysis of heterogeneous features in cancer expression data. Journal of Clinical Bioinformatics, 2 1: 22.1-22.11. doi:10.1186/2043-9113-2-22 52 2 Cited 7 times in Scopus7 2
Wang, Chenwei, Taciroglu, Alperen, Maetschke, Stefan, Nelson, Colleen, Ragan, Mark and Davis, Melissa (2013). mCOPA : analysis of heterogeneous features in cancer expression data. In: Abstracts of the Prostate Cancer World Congress and 14th Australasian Prostate Cancer Conferenc. The Prostate Cancer World Congress and 14th Australasian Prostate Cancer Conference, Melbourne, VIC Australia, (33-34). 6-10 August 2013. doi:10.1111/bju.12293 28   0 0
Madhamshettiwar, Piyush B., Maetschke, Stefan R., Davis, Melissa J. and Ragan, Mark A. (2013) RMaNI: Regulatory module network inference framework. BMC Bioinformatics, 14 Suppl. 16: S14.1-S14.10. doi:10.1186/1471-2105-14-S16-S14 29   0 Cited 1 times in Scopus1 0
Maetschke, Stefan R., Madhamshettiwar, Piyush B., Davis, Melissa J. and Ragan, Mark A. (2014) Supervised, semi-supervised and unsupervised inference of gene regulatory networks. Briefings in Bioinformatics, 15 2: 195-211. doi:10.1093/bib/bbt034 32   4 Cited 5 times in Scopus5 4
Maetschke, Stefan (2007). Topological models of transmembrane proteins for subcellular localization prediction PhD Thesis, School of Information Technology and Electrical Engineering, University of Queensland. 242 14