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Berkman, P, Biswas, B, Dalton-Morgan, J, Edwards, D, Gresshoff, p, Immelfort, M, Jiang, Q, Kazakoff, S, Koehorst, J, Scott, P. T., van Niekerk, Alvin and Vogt, J (2008). A Biotechnology-Genetics-Genomics (BGG) platform for improvements of growth, adaptability and sustainable biofuel and bioenergy production of Pongamia Pinnata. In: Biomass For A Clean Energy Future. Bioenergy Australia 2010 Conference, Novotel Sydney Manly Pacific, NSW, Australia, (). 8 -10 December, 2010. 139  
Edwards, David, Batley, Jacqueline and Snowdon, Rod J. (2013) Accessing complex crop genomes with next-generation sequencing. Theoretical and Applied Genetics, 126 1: 1-11. doi:10.1007/s00122-012-1964-x 108   30 Cited 32 times in Scopus32 0
Love, Christopher G. and Edwards, David (2007). Accessing integrated Brassica. In John M. Walker (Ed.), Plant Bioinformatics - Methods and Protocols (pp. 229-243) New Jersey: Humana Press Inc. 275  
Ruperao, Pradeep, Chan, Chon-Kit, Azam, Sarwar, Karafiatova, Miroslava, Hayashi, Satomi, Cizkova, Jana, Saxena, Rachit K., Simkova, Hana, Song, Chi, Vrana, Jan, Chitikineni, Annapurna, Visendi, Paul, Gaur, Pooran M., Millan, Teresa, Singh, Karam B., Taran, Bunyamin, Wang, Jun, Batley, Jacqueline, Dolezel, Jaroslav, Varshney, Rajeev K. and Edwards, David (2014) A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnology Journal, 12 6: 778-786. doi:10.1111/pbi.12182 8   1 Cited 1 times in Scopus1 3
Lim, Geraldine A. C., Jewell, Erica G., Li, Xi, Erwin, Timothy A., Love, Christopher, Batley, Jacqueline, Spangenberg, German and Edwards, David (2007) A comparative map viewer integrating genetic maps for Brassica and Arabidopsis. BMC Plant Biology, 7 40: 1-10. doi:10.1186/1471-2229-7-40 187   14 Cited 16 times in Scopus16 0
DeLacy, Ian H., Arief, Vivi N., Dieters, Mark J., Crossa, Jose, Godwin, Ian, Batley, Jacqueline, Davenport, Guy, Dreisiqacker, Susane, Edwards, Dave, Huttner, Eric, Lambrides, Christopher, Manes, Yan, Payne, Thomas, Singh, Ravi P., Warburton, Marilyn, Wenzl, Peter, William, Manilal, Kilian, Andrzej, McLaren, Graham, Crouch, Jonathan and Basford, Kaye E. (2008). A comparison of three genotype structures for 686 lines derived from pedigrees (COP), 1400 DArT markers and 420,000 data points from 25 Years of CIMMYT international bread wheat trials. In: Plant & Animal Genome XVI Conference Abstracts. Plant and Animal Genome XVI Conference, San Diego, CA, U.S.A., (). 12-16 January 2008. 159  
Cai, Guangqin, Yang, Qingyong, Yi, Bin, Fan, Chuchuan, Edwards, David, Batley, Jacqueline and Zhou, Yongming (2014) A complex recombination pattern in the genome of allotetraploid Brassica napusas revealed by a high-density genetic map. PLoS One, 9 10: e109910-e109910. doi:10.1371/journal.pone.0109910 13   Cited 0 times in Scopus0 1
Raman, Harsh, Raman, Rosy, Kilian, Andrzej, Detering, Frank, Long, Yan, Edwards, David, Parkin, Isobel A. P., Sharpe, Andrew G., Nelson, Matthew N., Larkan, Nick, Zou, Jun, Meng, Jinling, Aslam, M. Naveed, Batley, Jacqueline, Cowling, Wallace A. and Lydiate, Derek (2013) A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits. Bmc Genomics, 14 1: 277.1-277.13. doi:10.1186/1471-2164-14-277 63   13 Cited 10 times in Scopus10 1
Felitti, S. A., Tian, P, Edwards, D. and et al. (2005). A high-throughput gene silencing approach for studying the interaction between perennial ryegrass (Lolium perenne) and the fungal endophyte Neotyphodium lolii. In: M.O. Humphreys, Molecular Breeding for the Genetic Improvement of Forage Crops and Turf : Proceedings of the 4th International Symposium on the Molecular Breeding of Forage and Turf, a satellite workshop of the XXth International Grassland Congress. 4th International Symposium on the Molecular Breeding of Forage and Turf, Aberystwyth, Wales, (215). 3-7 July, 2005. 108  
Dalton-Morgan, Jessica, Hayward, Alice, Alamery, Salman, Tollenaere, Reece, Mason, Annaliese S., Campbell, Emma, Patel, Dhwani, Lorenc, Michał T., Yi, Bin, Long, Yan, Meng, Jinling, Raman, Rosy, Raman, Harsh, Lawley, Cindy, Edwards, David and Batley, Jacqueline (2014) A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes. Functional and Integrative Genomics, 14 4: 643-655. doi:10.1007/s10142-014-0391-2 19   0 Cited 0 times in Scopus0 2
Batley, J., Mogg, R., Edwards, D., O'Sullivan, H. and Edwards, K. J. (2003) A high-throughput SNuPE assay for genotyping SNPs in the flanking regions of Zea mays sequence tagged simple sequence repeats. Molecular Breeding, 11 2: 111-120. doi:10.1023/A:1022446021230 115   24 Cited 28 times in Scopus28 0
Edwards, D., Coghill, J., Batley, J., Holdsworth, M. and Edwards, K. J. (2002) Amplification and detection of transposon insertion flanking sequences using fluorescent MuAFLP. Biotechniques, 32 5: 1090-1097. 126   15
Love, C., Logan, E., Erwin, T., Spangenberg, G. and Edwards, D. (2006). Analysis of the Brassica ´A´ and ´C´ genomes and comparison with the genome of Arabidopsis Thaliana. In: Y. P. Lim, Acta Horticulturae. Proceedings of the Joint Meeting of the Fourteenth Crucifer Genetics Workshop and Fourth ISHS Symposium on Brassicas. 4th International Symposium on Brassicas and 14th Crucifer Genetics Workshop, Daejeon, Korea, (99-104). 24 - 28 October 2004. 159   Cited 5 times in Scopus5
Hopkins, C., Mogg, R., Gororo, N., Salisbury, P. A., Burton, W. A., Love, C., Spangenberg, G. C., Edwards, D. and Batley, J. (2006). An assessment of genetic diversity within and between Brassica Napus and Brassica Juncealines from international germplasm collections. In: Y.P. Lim, Acta Horticulturae: Proceedings of the Joint Meeting of the Fourteenth Crucifer Genetics Workshop and Fourth ISHS Symposium on Brassicas. 4th International Symposium on Brassicas and 14th Crucifer Genetics Workshop, Daejeon, Korea, (115-119). 24 - 28 October 2004. 113   3 Cited 2 times in Scopus2
Love, Christopher G., Batley, Jacqueline and Edwards, David (2003) Applied Computational Tools for Crop Genome Research. Journal of Plant Biotechnology, 5 4: 193-195. 89  
Webster, T., Nguyen, N., Rhodes, C., Edwards, D. and et al. (2005). A proposal for an international transcriptome initiative for forage and turf: microarray tools for expression profiling in ryegrass, clover and grass endophytes. In: M.O. Humphreys, Molecular breeding for the genetic improvement of forage crops and turf : proceedings of the 4th international symposium on the molecular breeding of forage and turf, a satellite workshop of the XXth International Grassland Congress. 4th International Symposium on the Molecular Breeding of Forage and Turf, Aberystwyth, Wales, (174). 3-7 July, 2005. 109  
Arief, Vivi N., DeLacy, Ian H., Dieters, Mark J., Crossa, Jose, Godwin, Ian, Batley, Jacqueline, Davenport, Guy, Dreisiqacker, Susane, Edwards, Dave, Huttner, Eric, Lambrides, Christopher, Manes, Yan, Payne, Thomas, Singh, Ravi P., Warburton, Marilyn, Wenzl, Peter, Williams, Manila, Kilian, Andrezj, McLaren, Graham, Crouch, Jonathan and Basford, Kaye E. (2008). Association between phenotype and DArT markers in spring wheat using 25 years Of CIMMYT international field trial data. In: Plant & Animal Genome XVI Conference Abstracts. Plant & Animal Genomes XVI Conference, San Diego, USA, (). 12-16 January 2008. 237  
Batley, J., Vecchies, A., Mogg, R., Bond, J., Cogan, N., Hopkins, C., Gororo, N., Marcroft, S., Forster, J., Spangenberg, G. and Edwards, D. (2003). A study of genetic diversity among Brassica napus and Brassica juncea germplasm collections using simple sequence repeat (SSR) molecular markers. In: Thirteenth Biennial Australian Research Assembly on Brassicas. Proceedings of a Conference. Thirteenth Biennial Australian Research Assembly on Brassicas, Tamworth, Australia, (84-86). 8-12 September, 2003. 226  
Hong, CP, Plaha, P, Koo, DH, Yang, TJ, Choi, SR, Lee, YK, Uhm, T, Bang, JW, Edwards, D, Bancrofts, I, Park, BS, Lee, J and Lim, YP (2006) A survey of the Brassica rapa genome by BAC-End sequence analysis and comparison with Arabidopsis thaliana. Molecules And Cells, 22 3: 300-307. 265   28 Cited 27 times in Scopus27
Wilson, I. D., Barker, G. L. A., Beswick, R. W., Shepherd, S. K., Lu, C. G., Coghill, J. A., Edwards, D., Owen, P., Lyon, R., Parker, J. S., Lenton, J. R., Holdsworth, M. J., Shewry, P. R. and Edwards, K. J. (2004) A Transcriptomics Resource for Wheat Functional Genomics. Plant Biotechnology Journal, 2 6: 495-506. doi:10.1111/j.1467-7652.2004.00096.x 139   38 Cited 43 times in Scopus43 0
Edwards, David (Dave) (SAFS) (2014): Australian Wheat. The University of Queensland. Collection. 28  
Batley, Jacqueline, Jewell, Erica and Edwards, David (2007). Automated discovery of single nucleotide polymorphism and simple sequence repeat molecular genetic markers. In David Edwards (Ed.), Plant Bioinformatics - Methods and Protocols (pp. 473-494) Totowa, NJ: Humana Press Inc. 84  
Duran, Chris, Appleby, Nikki, Clark, Terry, Wood, David, Imelfort, Michael, Batley, Jacqueline and Edwards, David (2009) AutoSNPdb: An annotated single nucleotide polymorphism database for crop plants. Nucleic Acids Research, 37 Supp. 1: D951-D953. doi:10.1093/nar/gkn650 79   27 Cited 39 times in Scopus39 0
Dieters, M. J., Crossa, J., Godwin, I. D., Batley, J., Davenport, G., Dreisigacker, S., Edwards, D., Huttner, E., Lambrides, C. J., Manes, Y., Payne, T., Singh, R. P., Duveiller, E., Warburton, M., Wenzl, P., Kilian, A., McLaren, G., Braun, H-J., Crouch, J., Ortiz, R. and Basford, K. E. (2008). A wheat phenome atlas and phenome atlas toolbox. In: ASC2008: Australian Statistics Conference, Melbourne, Vic, Australia, (). 30 June - 3 July, 2008. 76  
Erwin, Timothy A., Jewell, Erica G., Love, Christopher G., Lim, Geraldine A. C., Chapman, Ross, Batley, Jacqueline, Stajich, Jason E., Mongin, Emmanuel, Stupka, Elia, Ross, Bruce, Spangenberg, German and Edwards, David (2007) BASC: An integrated bioinformatics system for Brassica research. Nucleic Acids Research, 35 suppl 1: D870-D873. doi:10.1093/nar/gkl998 71   7 Cited 11 times in Scopus11 0
Edwards, D. (2007). Bioinformatics and plant genomics for staple crops improvement. In Manjit S. Kang and P. M. Priyadarshan (Ed.), Breeding Major Food Staples 1 ed. (pp. 93-106) Iowa, USA: Blackwell. 114  
Edwards, D. and Batley, J. (2008). Bioinformatics: Fundamentals and applications in plant genetics, mapping and breeding. In Chittaranjan Kole and Albert G. Abbott (Ed.), Principles and practices of plant genomics (pp. 269-302) Enfield, NH, U.S.A.: Science Publishers. 122  
Lee, Hong C., Lai, Kaitao, Lorenc, Michal Tadeusz, Imelfort, Michael, Duran, Chris and Edwards, David (2012) Bioinformatics tools and databases for analysis of next-generation sequence data. Briefings in Functional Genomics, 11 1: 12-24. doi:10.1093/bfgp/elr037 74   10 Cited 18 times in Scopus18 1
Love, Christopher G., Robinson, Andrew J., Lim, Geraldine A. C., Hopkins, Clare J., Batley, Jacqueline, Barker, Gary, Spangenberg, German C. and Edwards, David (2005) Brassica ASTRA: An integrated database for Brassica genomic research. Nucleic Acids Research, 33 D656-D659. doi:10.1093/nar/gki036 117   10 Cited 21 times in Scopus21 0
Edwards, David, Wilcox, Stephen, Barrero, Roberto A., Fleury, Delphine, Cavanagh, Colin R., Forrest, Kerrie L., Hayden, Matthew J., Moolhuijzen, Paula, Keeble-Gagnere, Gabriel, Bellgard, Matthew I., Lorenc, Michal T., Shang, Catherine A., Baumann, Ute, Taylor, Jennifer M., Morell, Matthew K., Langridge, Peter, Appels, Rudi and Fitzgerald, Anna (2012) Bread matters: a national initiative to profile the genetic diversity of Australian wheat. Plant Biotechnology Journal, 10 6: 703-708. doi:10.1111/j.1467-7652.2012.00717.x 32   6 Cited 9 times in Scopus9 1
Golicz, A. A., Bayer, P. E., Martinez, P. A., Lai, K., Lorenc, M. T., Alamery, S., Hayward, A., Tollenaere, R., Batley, J., Edwards, D., Long, Y. and Meng, J. (2013) Characterising diversity in the Brassica genomes. Acta Horticulturae, 1005 33-48. 74 5 Cited 0 times in Scopus0
Ling, Alison E., Kaur, Jatinder, Burgesss, Benjamin, Hand, Melanie, Hopkins, Clare J., Li, Xi, Love, Christopher G., Vardy, Megan, Walkiewicz, Marzena, Spengenberg, German, Edwards, David and Batley, Jacqueline (2007) Characterization of simple sequence repeat markers derived in silico from Brassica rapa bacterial artificial chromosome sequences and their application in Brassica napus. Molecular Ecology Notes, 7 2: 273-277. doi:10.1111/j.1471-8286.2006.01578.x 95   18 Cited 19 times in Scopus19 0
Mogg, R., Batley, J., Hanley, S., Edwards, D., O'Sullivan, H. and Edwards, K. J. (2002) Characterization of the flanking regions of Zea mays microsatellites reveals a large number of useful sequence polymorphisms. Theoretical And Applied Genetics, 105 4: 532-543. doi:10.1007/s00122-002-0897-1 53   29 Cited 35 times in Scopus35 0
Edwards, David (Dave) (SAFS) (2014): Chickpea Gbrowse data. The University of Queensland. Collection. 20  
Spangenberg, G., Sawbridge, T., Ong, E., Love, C., Erwin, T., Logan, E. and Edwards, D. (2005). Clover ASTRA: a web-based resource for Trifolium EST analysis. In: M. Humphreys, Molecular Breeding for the Genetic Improvement of Forage Crops and Turf : Proceedings of the 4th International Symposium on the Molecular Breeding of Forage and Turf, a satellite workshop of the XXth International Grassland Congress. 4th International Symposium on the Molecular Breeding of Forage and Turf, Aberystwyth, Wales, (). 3-7 July 2005. 59  
Duran, C, Boskovic, Z, Imelfort, M, Batley, J, Hamilton, NA and Edwards, D (2010) CMap3D: a 3D visualization tool for comparative genetic maps. Bioinformatics, 26 2: 273-274. doi:10.1093/bioinformatics/btp646 145   5 Cited 6 times in Scopus6 0
Sexton, Adrienne C., Cozijnsen, Anton J., Keniry, Andrew, Jewell, Erica, Love, Christopher G., Batley, Jacqueline, Edwards, David and Howlett, Barbara J. (2006) Comparison of transcription of multiple genes at three developmental stages of the plant pathogen Sclerotinia sclerotiorum. Fems Microbiology Letters, 258 1: 150-160. doi:10.1111/j.1574-6968.2006.00212.x 92   24 Cited 24 times in Scopus24 0
Deng, Pingchuan, Nie, Xiaojun, Wang, Le, Cui, Licao, Liu, Peixun, Tong, Wei, Biradar, Siddanagouda S., Edwards, David, Berkman, Paul, Simkova, Hana, Dolezel, Jaroslav, Luo, Mincheng, You, Frank, Batley, Jacqueline, Fleury, Delphine, Appels, Rudi and Weining, Song (2014) Computational identification and comparative analysis of miRNAs in Wheat Group 7 Chromosomes. Plant Molecular Biology Reporter, 32 2: 487-500. doi:10.1007/s11105-013-0669-x 41   1 Cited 0 times in Scopus0 0
Azam, Sarwar, Thakur, Vivek, Ruperao, Pradeep, Shah, Trushar, Balaji, Jayashree, Amindala, BhanuPrakash, Farmer, Andrew D., Studholme, David J., May, Gregory D., Edwards, David, Jones, Jonathan D. G. and Varshney, Rajeev K. (2012) Coverage-based consensus calling (cbcc) of short sequence reads and comparison of cbcc results to identify snps in chickpea (cicer arietinum; fabaceae), a crop species without a reference genome. American Journal of Botany, 99 2: 186-192. doi:10.3732/ajb.1100419 45   13 Cited 12 times in Scopus12 2
Imelfort, Michael and Edwards, David (2009) De novo sequencing of plant genomes using second-generation technologies. Briefings in Bioinformatics, 10 6: 609-618. doi:10.1093/bib/bbp039 94 1 49 Cited 56 times in Scopus56 0
Nie, Xiaojun, Li, Bianli, Wang, Le, Liu, Peixun, Biradar, Siddanagouda S., Li, Tao, Dolezel, Jaroslav, Edwards, David, Luo, Mingcheng and Song Weining (2012) Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using Ngs technology. American Journal of Botany, 99 9: E369-E371. doi:10.3732/ajb.1200077 30   3 Cited 6 times in Scopus6 0
Imelfort, Michael, Duran, Chris, Batley, Jacqueline and Edwards, David (2009) Discovering genetic polymorphisms in next-generation sequencing data. Plant Biotechnology Journal, 7 4: 312-317. doi:10.1111/j.1467-7652.2009.00406.x 57   53 Cited 63 times in Scopus63 0
Lorenc, Michal T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline and Edwards, David (2012) Discovery of single nucleotide polymorphisms in complex genomes using SGSautoSNP. Biology, 1 2: 370-382. doi:10.3390/biology1020370 111   Cited 10 times in Scopus10 2
Berkman, Paul J., Visendi, Paul, Lee, Hong C., Stiller, Jiri, Manoli, Sahana, Lorenc, Michal T., Lai, Kaitao, Batley, Jacqueline, Fleury, Delphine, Simkova, Hana, Kubalakova, Marie, Weining, Song, Dolezel, Jaroslav and Edwards, David (2013) Dispersion and domestication shaped the genome of bread wheat. Plant Biotechnology Journal, 11 5: 564-571. doi:10.1111/pbi.12044 48   7 Cited 9 times in Scopus9 1
Edwards, D., Hansen, D. and Stajich, J.E. (2009). DNA sequence databases. In David Edwards, Jason Stajich and David Hansen (Ed.), Bioinformatics : Tools and Applications (pp. 1-11) New York, United States: Springer. 43  
Varshney, Rajeev K., Song, Chi, Saxena, Rachit K., Azam, Sarwar, Yu, Sheng, Sharpe, Andrew G., Cannon, Steven, Baek, Jongmin, Rosen, Benjamin D., Tar'an, Bunyamin, Millan, Teresa, Zhang, Xudong, Ramsay, Larissa D., Iwata, Aiko, Wang, Ying, Nelson, William, Farmer, Andrew D., Gaur, Pooran M., Soderlund, Carol, Penmetsa, R. Varma, Xu, Chunyan, Bharti, Arvind K., He, Weiming, Winter, Peter, Zhao, Shancen, Hane, James K., Carrasquilla-Garcia, Noelia, Condie, Janet A., Upadhyaya, Hari D., Luo, Ming-Cheng, Thudi, Mahendar, Gowda, C. L. L., Singh, Narendra P., Lichtenzveig, Judith, Gali, Krishna K., Rubio, Josefa, Nadarajan, N., Dolezel, Jaroslav, Bansal, Kailash C., Xu, Xun, Edwards, David, Zhang, Gengyun, Kahl, Guenter, Gil, Juan, Singh, Karam B., Datta, Swapan K., Jackson, Scott A., Wang, Jun and Cook, Douglas R. (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology, 31 3: 240-246. doi:10.1038/nbt.2491 42   98 Cited 97 times in Scopus97 86
Shields, K., Ramsperger, M., Felitti, S. A., Edwards, D. and et al. (2005). Endophyte ASTRA: a web-based resource for Neotyphodium and Epichloe EST analysis. In: M.O. Humphreys, Molecular Breeding for the Genetic Improvement of Forage Crops and Turf : Proceedings of the 4th International Symposium on the Molecular Breeding of Forage and Turf, a satellite workshop of the XXth International Grassland Congress. 4th International Symposium on the Molecular Breeding of Forage and Turf, a satellite workshop of the XXth International Grassland Congress, Aberystwyth, Wales, (207). 3-7 July, 2005. 51  
Kudapa, Himabindu, Ramalingam, Abirami, Nayakoti, Swapna, Chen, Xiaoping, Zhuang, Wei-Jian, Liang, Xuanqiang, Kahl, Guenter, Edwards, David and Varshney, Rajeev K. (2013) Functional genomics to study stress responses in crop legumes: Progress and prospects. Functional Plant Biology, 40 12: 1221-1233. doi:10.1071/FP13191 39   2 Cited 2 times in Scopus2 0
Spangenberg, G. C., Forster, J. W., Edwards, D., John, U. A., Mouradov, Emmerling, M., Batley, J., Felitti, S., Cogan, N. O. I., Smith, K. F. and Dobrowolski, M. P. (2005). Future directions in the molecular breeding of forage and turf. In: M. O. Humphreys, Molecular breeding for the genetic improvement of forage crops and turf. 4th International Symposium on the Molecular Breeding of Forage and Turf, a satellite workshop of the XXth International Grassland Congress, Aberystwyth, Wales, (83-97). 3 - 7 July, 2005. 231  
Duran, Chris, Eales, Dominic, Marshall, Daniel, Imelfort, Michael, Stiller, Jiri, Berkman, Paul J., Clark, Terry, McKenzie, Megan, Appleby, Nikki, Batley, Jacqueline, Basford, Kaye and Edwards, David (2010). Future tools for association mapping in crop plants. In: International Conference on Exploiting Genome Wide Association in Oilseed Brassicas - A Model for genetic Improvement of Major OECD Crops for Sustainable Future Farming, Perth, WA, Australia, (1017-1023). 9 - 12 November 2009. doi:10.1139/G10-057 139   19 Cited 21 times in Scopus21 0

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