Browse by all authors Browse By Author ID - Chan, Cheong Xin

Browse Results (45 results found)

Subscribe to the RSS feed for this result setSubscribe to the RSS feed for this result set

Refine

  Abstract Views File Downloads Thomson Reuters Web of Science Citation Count Scopus Citation Count Altmetric Score
Chan, Cheong Xin, Soares, Marcelo B., Bonaldo, Maria F., Wisecaver, Jennifer H., Hackett, Jeremiah D., Anderson, Donald M., Erdner, Deana L. and Bhattacharya, Debashish (2012) Analysis of Alexandrium tamarense (Dinophyceae) genes reveals the complex evolutionary history of a microbial eukaryote. Journal of Phycology, 48 5: 1130-1142. doi:10.1111/j.1529-8817.2012.01194.x 45   9 Cited 9 times in Scopus9 1
Chan, Cheong Xin and Bhattacharya, Debashish (2013) Analysis of horizontal genetic transfer in red algae in the post-genomics age. Mobile Genetic Elements, 3 6: e27669.1-e27669.5. doi:10.4161/mge.27669 45 54 1
Chan, Cheong Xin, Zauner, Simone, Wheeler, Glen, Grossman, Arthur R., Prochnik, Simon E., Blouin, Nicolas A., Zhuang, Yunyun, Benning, Christoph, Berg, Gry Mine, Yarish, Charles, Eriksen, Renee L., Klein, Anita S., Lin, Senjie, Levine, Ira, Brawley, Susan H. and Bhattacharya, Debashish (2012) Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems. Plant Physiology, 158 4: 2001-2012. doi:10.1104/pp.112.193896 67   8 Cited 9 times in Scopus9 0
Bhattacharya, Debashish, Price, Dana C., Chan, Cheong Xin, Gross, Jeferson, Steiner, Jürgen M. and Löffelhardt, Wolfgang (2014). Analysis of the genome of Cyanophora paradoxa: an algal model for understanding primary endosymbiosis. In Wolfgang Löffelhardt (Ed.), Endosymbiosis (pp. 135-148) Wien, Austria: Springer. doi:10.1007/978-3-7091-1303-5_7 55 1 0
Paungfoo-Lonhienne, Chanyarat, Lonhienne, Thierry G. A., Yeoh, Yun Kit, Webb, Richard I., Lakshmanan, Prakash, Chan, Cheong Xin, Lim, Phaik-Eem, Ragan, Mark A., Schmidt, Susanne and Hugenholtz, Philip (2014) A new species of Burkholderia isolated from sugarcane roots promotes plant growth. Microbial Biotechnology, 7 2: 142-154. doi:10.1111/1751-7915.12105 85   3 Cited 3 times in Scopus3 46
Moustafa, Ahmed, Chan, Cheong Xin, Danforth, Megan, Zear, David, Ahmed, Hiba, Jadhav, Nagnath, Savage, Trevor and Bhattacharya, Debashish (2008). A phylogenomic approach for studying plastid endosymbiosis. In: Jonathan Arthur and See-Kiong Ng, Genome Informatics 2008: Proceedings of the 19th International Conference. 19th International Conference on Genome Informatics (GIW 2008), Gold Coast , Qld., Australia, (165-176). 1 - 3 December 2008. 51   2 Cited 2 times in Scopus2
Chan, Cheong Xin, Darling, Aaron E., Beiko, Robert G. and Ragan, Mark A. (2009) Are protein domains modules of lateral genetic transfer?. PLoS One, 4 2: e4524.1-e4524.8. doi:10.1371/journal.pone.0004524 100   30 Cited 28 times in Scopus28 0
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2007). A two-phase approach for detecting recombination in nucleotide sequences. In: Proceedings of the First Southern African Bioinformatics Workshop (SABioinf 2007). The First Southern African Bioinformatics Workshop, Johannesburg, South Africa, (9-16). 28-30 January 2007. 229 65
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2007) A two-phase strategy for detecting recombination in nucleotide sequences. 135 382
Beiko, Robert G., Chan, Cheong Xin and Ragan, Mark A. (2005) A Word-Oriented Approach to Alignment Validation. Bioinformatics, 21 10: 2230-2239. doi:10.1093/bioinformatics/bti335 213 183 10 Cited 9 times in Scopus9 0
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2004). Benchmarking the Detection and Analysis of Recombination. In: Proceedings of the 12th International Conference Intelligent Systems for Molecular Biology (ISMB) and 3rd European Conference in Computational Biology (ECCB). 12th International Conference Intelligent Systems for Molecular Biology (ISMB) and 3rd European Conference in Computational Biology (ECCB), Glasgow, UK, (160-160). 31 July - 4 August 2004. 190 361
Ragan, Mark A. and Chan, Cheong Xin (2013) Biological intuition in alignment-free methods: response to Posada. Journal of Molecular Evolution, 77 1-2: 1-2. doi:10.1007/s00239-013-9573-0 40   2 Cited 1 times in Scopus1 0
Chan, Cheong Xin, Mahbob, Maisarah and Ragan, Mark A. (2013) Clustering evolving proteins into homologous families. BMC Bioinformatics, 14 120.1-120.11. doi:10.1186/1471-2105-14-120 29   2 Cited 1 times in Scopus1 4
Chan, Cheong Xin (2004) Comparing Different Approaches in Large-Scale Seaweed Gene Discovery. Bioinformatics India, 2 3: 106-111. 342 1069
Price, Dana C., Chan, Cheong Xin, Yoon, Hwan Su, Yang, Eun Chan, Qiu, Huan, Weber, Andreas P. M., Schwacke, Rainer, Gross, Jeferson, Blouin, Nicolas A., Lane, Chris, Reyes-Prieto, Adrian, Durnford, Dion G., Neilson, Jonathan A. D., Lang, B. Franz, Burger, Gertraud, Steiner, Jurgen M., Loffelhardt, Wolfgang, Meuser, Jonathan E., Posewitz, Matthew C., Ball, Steven, Arias, Maria Cecilia, Henrissat, Bernard, Coutinho, Pedro M., Rensing, Stefan A., Symeonidi, Aikaterini, Doddapaneni, Harshavardhan, Green, Beverley R., Rajah, Veeran D., Boore, Jeffrey and Bhattacharya, Debashish (2012) Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science, 335 6070: 843-847. doi:10.1126/science.1213561 147   94 Cited 94 times in Scopus94 71
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2006) Detecting Recombination in Evolving Nucleotide Sequences. BMC Bioinformatics, 7 Article 412: 1-15. doi:10.1186/1471-2105-7-412 161 166 30 Cited 28 times in Scopus28 0
Chan, Cheong Xin, Bhattacharya, Debashish and Reyes-Prieto, Adrian (2012) Endosymbiotic and horizontal gene transfer in microbial eukaryotes: impacts on cell evolution and the tree of life. Mobile Genetic Elements, 2 2: 101-105. doi:10.4161/mge.20110 46   6
Gross, Jeferson, Wajid, Sana, Price, Dana C., Zelzion, Ehud, Li, Junyi, Chan, Cheong Xin and Bhattacharya, Debashish (2013) Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa. PLoS One, 8 7: 67669.1-67669.9. doi:10.1371/journal.pone.0067669 39   1 Cited 1 times in Scopus1 2
Chan, Cheong Xin, Baglivi, Francesca L., Jenkins, Christina E. and Bhattacharya, Debashish (2013) Foreign gene recruitment to the fatty acid biosynthesis pathway in diatoms. Mobile Genetic Elements, 3 5: e27313.1-e27313.7. doi:10.4161/mge.27313 35   2
Bhattacharya, Debashish, Price, Dana C., Chan, Cheong Xin, Qiu, Huan, Rose, Nicholas, Ball, Steven, Weber, Andreas P. M., Arias, Maria Cecilia, Henrissat, Bernard, Coutinho, Pedro M., Krishnan, Anagha, Zaeuner, Simone, Morath, Shannon, Hilliou, Frederique, Egizi, Andrea, Perrineau, Marie-Mathilde and Yoon, Hwan Su (2013) Genome of the red alga Porphyridium purpureum. Nature Communications, 4 1941.1-1941.10. doi:10.1038/ncomms2931 36   19 Cited 21 times in Scopus21 3
Chan, Cheong Xin, Bernard, Guillaume, Poirion, Olivier, Hogan, James M. and Ragan, Mark A. (2014) Inferring phylogenies of evolving sequences without multiple sequence alignment. Scientific Reports, 4 e6504.1-e6504.9. doi:10.1038/srep06504 41   0 4
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2008). Large-scale detection of recombination in nucleotide sequences. In: Atan, Mohd. K. A. and Krishnarajan, I. S., AIP Conference Proceedings: International Conference on Mathematical Biology 2007. International Conference on Mathematical Biology 2007, Putrajaya, Malaysia, (101-104). 4-6 September 2007. doi:10.1063/1.2883829 33   0 Cited 0 times in Scopus0 0
Chan, Cheong Xin, Beiko, Robert G., Darling, Aaron E. and Ragan, Mark A. (2009) Lateral transfer of genes and gene fragments in prokaryotes. Genome Biology and Evolution, 1 429-438. doi:10.1093/gbe/evp044 70   29 0
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2011) Lateral transfer of genes and gene fragments in Staphylococcus extends beyond mobile elements. Journal of Bacteriology, 193 15: 3964-3977. doi:10.1128/JB.01524-10 51   16 Cited 14 times in Scopus14 0
Stiller, John W., Perry, Justin, Rymarquis, Linda A., Accerbi, Monica, Green, Pamela J., Prochnik, Simon, Lindquist, Erika, Chan, Cheong Xin, Yarish, Charles, Lin, Senjie, Zhuang, Yunyun, Blouin, Nicolas A. and Brawley, Susan H. (2012) Major developmental regulators and their expression in two closely related species of Porphyra (Rhodophyta). Journal of Phycology, 48 4: 883-896. doi:10.1111/j.1529-8817.2012.01138.x 42 1 2 Cited 4 times in Scopus4 0
Ragan, Mark A., Bernard, Guillaume and Chan, Cheong Xin (2014) Molecular phylogenetics before sequences : oligonucleotide catalogs as k-mer spectra. RNA Biology, 11 3: 176-185. doi:10.4161/rna.27505 29   1 Cited 0 times in Scopus0 13
Chan, Cheong Xin and Ragan, Mark A. (2013) Next-generation phylogenomics. Biology Direct, 8 1: 3.1-3.14. doi:10.1186/1745-6150-8-3 70   9 Cited 9 times in Scopus9 22
Chan, Cheong Xin and Bhattacharya, Debashish (2011) Non-random sharing of plantae genes. Communicative and Integrative Biology, 4 3: 361-363. doi:10.4161/cib.4.3.15700 41 4 Cited 1 times in Scopus1 0
Chan, Cheong Xin, Beiko, Robert G. and Ragan, Mark A. (2004). Oh Father Where Art Thou? Comparing Different Ways of Finding Recombination Events. In: First ARC Centre in Bioinformatics Annual All Hands Meeting, The University of Queensland, (). 10-11 May, 2004. 248 61
Chan, Cheong Xin, Teo, Swee-Sen, Ho, Chai-Ling, Othman, Rofina Yasmin and Phang, Siew-Moi (2004) Optimisation of RNA Extraction from Gracilaria changii (Gracilariales, Rhodophyta). Journal of Applied Phycology, 16 4: 297-301. doi:10.1023/B:JAPH.0000047782.20940.de 454 1782 21 Cited 24 times in Scopus24 0
Chan, Cheong Xin and Bhattacharya, Debashish (2011). Plastid origin and evolution. In eLS (pp. 1-8) Chichester, United Kingdom: John Wiley & Sons. doi:10.1002/9780470015902.a0023639 56 57 0
Chan, Cheong Xin, Gross, Jeferson, Yoon, Hwan Su and Bhattacharya, Debashish (2011) Plastid origin and evolution: New models provide insights into old problems. Plant Physiology, 155 4: 1552-1560. doi:10.1104/pp.111.173500 44   17 Cited 21 times in Scopus21 6
Chan, Cheong Xin, Blouin, Nicolas A., Zhuang, Yunyun, Zaeuner, Simone, Prochnik, Simon E., Lindquist, Erika, Lin, Senjie, Benning, Christoph, Lohr, Martin, Yarish, Charles, Gantt, Elisabeth, Grossman, Arthur R., Lu, Shan, Mueller, Kirsten, Stiller, John W., Brawley, Susan H. and Bhattacharya, Debashish (2012) Porphyra (Bangiophyceae) transcriptomes provide insights into red algal development and metabolism. Journal of Phycology, 48 6: 1328-1342. doi:10.1111/j.1529-8817.2012.01229.x 42   9 Cited 7 times in Scopus7 1
Gantt, Elisabeth, Berg, G. Mine, Bhattacharya, Debashish, Blouin, Nicolas A., Brodie, Juliet A., Chan, Cheong Xin, Collen, Jonas, Cunningham, Francis X., Gross, Jeferson, Grossman, Arthur R., Karpowicz, Steven, Kitade, Yukihiro, Klein, Anita S., Levine, Ira A., Lin, Senjie, Lu, Shan, Lynch, Michael, Minocha, Subhash C., Muller, Kirsten, Neefus, Christopher D., De Oliveira, Mariana Cabral, Rymarquis, Linda, Smith, Alison, Stiller, John W., Wu, Wen-Kai, Yarish, Charles, Zhuang, Yun and Brawley, Susan H. (2010). Porphyra: Complex life histories in a harsh environment. In Joseph Seckbach and David J. Chapman (Ed.), Red algae in the genomic age (pp. 129-148) New York , NY, U.S.A.: Springer. doi:10.1007/978-90-481-3795-4_7 110   9 0
Chan, C. X. and Martone, P. T. (2012). Recent advances in the calliarthron genome: climate Responses and cell wall evolution. In: PSA 2012 Abstracts. Annual Meeting of the Phycological Society of America (PSA) 2012, Charleston SC, United States, (S1-S2). 20-23 June 2012. doi:10.1111/j.1529-8817.2012.01206.x 28   1 1
Chan, C.X. and Martone, P. T. (2012). Recent advances in the calliarthron genome: Climate responses and cell wall evolution. In: PSA 2012 Abstracts. Annual Meeting of the Phycological Society of America (PSA) 2012, Charleston SC, United States, (S1-S2). 20-23 June 2012. doi:10.1111/j.1529-8817.2012.01206.x 92   0 1
Chan, Cheong Xin, Yang, Chan Yang, Banerjee, Titas, Yoon, Hwan Su, Martone, Patrick T., Estevez, Jose M. and Bhattacharya, Debashish (2011) Red and green algal monophyly and extensive gene sharing found in a rich repertoire of red algal genes. Current Biology, 21 4: 328-333. doi:10.1016/j.cub.2011.01.037 38   40 Cited 44 times in Scopus44 0
Chan, Cheong Xin, Reyes-Prieto, Adrian and Bhattacharya, Debashish (2011) Red and green algal origin of diatom membrane transporters: Insights into environmental adaptation and cell evolution. PLoS One, 6 12: e29138.1-e29138.11. doi:10.1371/journal.pone.0029138 60 16 13 Cited 11 times in Scopus11 0
Phang, Siew-Moi, Wong, Ching-Lee, Lim, Phaik-Eem, Yeong, Hui-Yin and Chan, Cheong Xin (2005) Seaweed diversity of Langkawi with emphasis on Northeast Langkawi. Malaysian Journal of Science, 24 77-94. 65  
Gross, J., Wajid, S., Price, D., Chan, C. X. and Bhattacharya, D. (2012). Srnas of cyanophora paradoxa and chlamydomonas reinhardtii, a system genomics approach to understand algal evolution. In: PSA 2012 Abstracts. Annual Meeting of the Phycological Society of America (PSA) 2012, Charleston SC, United States, (S20-S20). 20-23 June 2012. doi:10.1111/j.1529-8817.2012.01206.x 38   0 1
Bhattacharya, D., Gross, J., Price, D. C., Chan, C. X. and Zelzion, U. (2013). The Cyanophora genome: analysis of gene and small RNA content in a pivotal algal lineage. In: Phycologia. 10th International Phycological Congress, Orlando, FL, United States, (10-11). 4-10 August 2013. doi:10.2216/0031-8884-52.sp4.1 31   0 0
Chan, Cheong Xin and Bhattacharya, Debashish (2010) The origin of plastids. Nature Education, 3 9: 84-1-84-5. 58 26
Chan, Cheong Xin, Ho, Chai-Ling, Othman, Rofina Yasmin and Phang, Siew-Moi (2002). Total RNA Extraction for the Red Seaweed Gracilaria changii (Gracilariales, Rhodophyta). In: Asia-Pacific Conference in Marine Science and Technology, Kuala Lumpur, Malaysia, (). 12-16 May, 2002. 675 2959
Chan, Cheong-Xin, Ho, Chai-Ling and Phang, Siew-Moi (2006) Trends in Seaweed Research. Trends in Plant Science, 11 4: 165-166. doi:10.1016/j.tplants.2006.02.003 1341 2586 15 Cited 20 times in Scopus20 0
Chan, Cheong Xin (2007). Units Of Genetic Transfer In Prokaryotes PhD Thesis, Institute For Molecular Bioscience, The University of Queensland. 322 156