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Tan, PTJ, Srinivasan, KN, Seah, SH, Koh, JLY, Tan, TW, Ranganathan, S and Brusic, V (2005) Accurate prediction of scorpion toxin functional properties from primary structures. Journal of Molecular Graphics & Modelling, 24 1: 17-24. doi:10.1016/j.jmgm.2005.01.003 161   8 Cited 9 times in Scopus9 0
Zhang, P., Brusic, V. and Basford, K. (2009). A hybrid model for prediction of peptide binding to MHC molecules. In: Koppen, M., Kasabov, N. and Coghill, G., Advances in Neuro-Information Processing - 15th International Conference, ICONIP 2008. Advances in Neuro-Information Processing, Auckland, New Zealand, (529-536). 25-28 November, 2008. 81   0 Cited 0 times in Scopus0
Brusic, V, Millot, M, Petrovsky, N, Gendel, SM, Gigonzac, O and Stelman, SJ (2003) Allergen databases. Allergy, 58 11: 1093-1100. doi:10.1034/j.1398-9995.2003.00248.x 57   44 Cited 46 times in Scopus46 0
Basford, K. and Brusic, V. (2006). Analysis of allergens from genomics to medicine. In: XXIIIrd International Biometric Conference [IBC], McGill University, Montreal, (15-15). 16-21 July 2006. 64  
Harrison, LC, Honeyman, MC, Trembleau, S, Gregori, S, Gallazzi, F, Augstein, P, Brusic, V, Hammer, J and Adorini, L (1997) A peptide-binding motif for I-A(g7), the class II major histocompatibility complex (MHC) molecule of NOD and Biozzi AB/H mice. Journal of Experimental Medicine, 185 6: 1013-1021. doi:10.1084/jem.185.6.1013 70   81 Cited 77 times in Scopus77 0
Brusic, V and Petrovsky, N (2003) Bioinformatics for characterisation of allergens, allergenicity and allergic crossreactivity. Trends In Immunology, 24 5: 225-228. doi:10.1061/S1471-4906(03)00075-9 96   22 Cited 22 times in Scopus22 0
Petrovsky, N. and Brusic, V (2006) Bioinformatics for study of autoimmunity. Autoimmunity, 39 8: 635-643. doi:10.1080/08916930601062437 73   11 Cited 14 times in Scopus14 0
Tongchusak, S., Chaiyaroj, S. C., Veeramani, A., Koh, J. L. Y. and Brusic, V. (2005) CandiVF - Candida albicans virulence factor database. International Journal of Peptide Research and Therapeutics, 11 4: 271-277. doi:10.1007/s10989-005-9268-5 219   5 Cited 6 times in Scopus6 0
Brusic, V and Zeleznikow, J (1999) Computational binding assays of antigenic peptides. Letters In Peptide Science, 6 5-6: 313-324. doi:10.1023/A:1008948124145 55   14 0
Petrovsky, N and Brusic, V (2002) Computational immunology: The coming of age. Immunology And Cell Biology, 80 3: 248-254. doi:10.1046/j.1440-1711.2002.01093.x 59   19 Cited 30 times in Scopus30 1
Brusic, V, Bajic, VB and Petrovsky, N (2004) Computational methods for prediction of T-cell epitopes - a framework for modelling, testing, and applications. Methods, 34 4: 436-443. doi:10.1016/j.ymeth.2004.06.006 75   80 Cited 100 times in Scopus100 0
Pappalardo, Francesco, Zhang, Ping, Halling-Brown, Mark, Basford, Kaye E., Scalia, Antonio, Shepherd, Adrian, Moss, David, Motta, Santo and Brusic, Vladimir (2008) Computational simulations of the immune system for personalized medicine: State of the art and challenges. Current Pharmacogenomics and Personalized Medicine, 6 4: 260-271. 153   Cited 6 times in Scopus6
Brusic, V, Petrovsky, N, Gendel, SM, Millot, M, Gigonzac, O and Stelman, SJ (2003) Computational tools for the study of allergens. Allergy, 58 11: 1083-1092. doi:10.1034/j.1398-9995.2003.00224.x 86   32 Cited 35 times in Scopus35 0
Lenffer, J, Lai, P, El Mejaber, W, Khan, AM, Koh, JLY, Tan, PTJ, Seah, SH and Brusic, V (2004) CysView: protein classification based on cysteine pairing patterns. Nucleic Acids Research, 32 W350-W355. doi:10.1093/nar/gkh475 62   13 Cited 19 times in Scopus19 0
Brusic, V, Pillai, RS, Silva, DG, Petrovsky, N, Schonbach, C, RIKEN GER Grp and GSL Members (2003) Cytokine-related genes identified from the RIKEN full-length mouse cDNA data set. Genome Research, 13 6B: 1307-1317. doi:10.1101/gr.1016503 38   1 Cited 2 times in Scopus2 0
Kierstead, LS, Rice, C, Brusic, V and Storkus, WJ (1998) DC facilitate the generation of tumor antigen-specific CD4+ T cells with diverse specificities. Journal of Leukocyte Biology, 73-73. 41   0
Tan, P. T. J., Ranganathan, S. and Brusic, V. (2006) Deduction of functional peptide motifs in scorpion toxins. Journal of Peptide Science, 12 6: 420-427. doi:10.1002/psc.744 65   7 Cited 7 times in Scopus7 0
Rajapakse, M, Wyse, L, Schmidt, B and Brusic, V (2005) Deriving matrix of peptide-MHC interactions in diabetic mouse by genetic algorithm. Intelligent Data Engineering And Automated Learning Ideal 2005, Proceedings, 3578 440-447. 101   5 Cited 6 times in Scopus6
Nakagawa, K, Brusic, V, McColl, G and Harrison, LC (1997) Direct evidence for the expression of multiple endogenous retroviruses in the synovial compartment in rheumatoid arthritis. Arthritis And Rheumatism, 40 4: 627-638. doi:10.1002/art.1780400407 47   56 Cited 67 times in Scopus67 0
Bajic, Vladimir B., Seah, Seng Hong, Chong, Allen, Zhang, Guanglan, Koh, Judice L. Y. and Brusic, Vladimir (2002) Dragon Promoter Finder: Recognition of vertebrate RNA polymerase II promoters. Bioinformatics, 18 1: 198-199. doi:10.1093/bioinformatics/18.1.198 94   61 Cited 69 times in Scopus69 0
Brusic, V, Bucci, K, Schonbach, C, Petrovsky, N, Zeleznikow, J and Kazura, JW (2001) Efficient discovery of immune response targets by cyclical refinement of QSAR models of peptide binding. Journal of Molecular Graphics & Modelling, 19 5: 405-+. doi:10.1016/S1093-3263(00)00099-1 31   27 Cited 32 times in Scopus32 0
Lin, Hong Huang, Ray, Surajit, Tongchusak, Songsak, Reinherz, Ellis L. and Brusic, Vladimir (2008) Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research. BMC Immunology, 9 . doi:10.1186/1471-2172-9-8 30   103 Cited 125 times in Scopus125 0
Handoko, SD, Keong, KC, Soon, OY, Zhang, GL and Brusic, V (2006) Extreme learning machine for predicting HLA-peptide binding. Advances In Neural Networks - Isnn 2006, Pt 3, Proceedings, 3973 -: 716-721. 100   7 Cited 8 times in Scopus8
Ramakrishna, V, Negri, DRM, Brusic, V, Fontanelli, R, Canevari, S, Bolis, G, Castelli, C and Parmiani, G (1997) Generation and phenotypic characterization of new human ovarian cancer cell lines with the identification of antigens potentially recognizable by HLA-restricted cytotoxic T cells. International Journal of Cancer, 73 1: 143-150. doi:10.1002/(SICI)1097-0215(19970926)73:1<143::AID-IJC22>3.0.CO;2-G 52   25 Cited 29 times in Scopus29 0
Zhang, Guang Lan, Khan, Asif M., Srinivasan, Kellathur N., Heiny, A. T., Lee, K. X., Kwoh, Chee Keong, August, J. Thomas and Brusic, Vladimir (2008) Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes. BMC Bioinformatics, 9 Supp. 1: . doi:10.1186/1471-2105-9-S1-S19 16   16 Cited 18 times in Scopus18 0
Miotto, Olivo, Heiny, A. T., Tan, Tin Wee, August, J. Thomas and Brusic, Vladimir (2008) Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. BMC Bioinformatics, 9 Supp. 1: . doi:10.1186/1471-2105-9-S1-S18 14   34 Cited 38 times in Scopus38 0
Silva, Diego G., Schonbach, Christian, Brusic, Vladimir, Socha, Luis A., Nagashima, Takeshi, Petrovsky, Nikolai, RIKEN GER Grp and GSL Members (2003) Identification of novel "pathologs" (human disease-related gene candidates) from the RIKEN full-length mouse cDNA data set. Genome Research, 13 6B: 1559-1559. doi:10.1101/gr.1461303 51   0 0
Silva, DG, Schonbach, C, Brusic, V, Socha, LA, Nagashima, T and Petrovsky, N (2004) Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system. Bmc Genomics, 5 28-1-28-14. doi:10.1186/1471-2164-5-28 38   5 Cited 5 times in Scopus5 0
Pappalardo, Francesco, Halling-Brown, Mark D., Rapin, Nicolas, Zhang, Ping, Alemani, Davide, Emerson, Andrew, Paci, Paola, Duroux, Patrice, Pennisi, Marzio, Palladini, Arianna, Miotto, Olivio, Churchill, Daniel, Rossi, Elda, Shepherd, Adrian J., Moss, David S., Castiglione, Filippo, Bernaschi, Massimo, Lefranc, Marie-Paule, Brunak, Soren, Motta, Santo, Lollini, Pier-Luigi, Basford, Kaye E. and Brusic, Vladimir (2009) ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings in Bioinformatics, 10 3: 330-340. doi:10.1093/bib/bbp014 91 1 26 Cited 30 times in Scopus30 0
Halling-Brown, Mark, Pappalardo, Francesco, Rapin, Nicolas, Zhang, Ping, Alemani, David, Emerson, Andrew, Castiglione, Filippo, Duroux, Patrice, Pennisi, Marzio, Miotto, Olivo, Churchill, Daniel, Rossi, Elda, Moss, David S., Sansom, Clare E., Bernaschi, Massimo, Lefranc, Marie-Paule, Brunak, Soren, Lund, Ole, Motta, Santo, Lollini, Pier-Luigi, Murgo, Annalisa, Palladini, Arianna, Basford, Kaye E., Brusic, Vladimir and Shepherd, Adrian J. (2010). ImmunoGrid: Towards agent-based simulations of the human immune system at a natural scale. In: Marco Viceconti and Peter Kohl, 4th International Congress on Computational Bioengineering/1st European Symposium on Biomedical Integrative Research, Bertinoro, Italy, (2799-2815). 16-18 September 2009. doi:10.1098/rsta.2010.0067 111 3 14 Cited 19 times in Scopus19 0
Brusic, V. and Petrovsky, N. (2005) Immunoinformatics and its relevance to understanidng human immune disease. Expert Review of Clinical Immunology, 1 1: 145-157. 48  
Lam, K.T., Koh, L.Y., Veeravalli, B. and Brusic, V (2006) Incremental maintenance of biological databases using association rule mining. Lecture Notes in Bioinformatics, 4146 140-150. 38   0 Cited 1 times in Scopus1
Brusic, V. (2006) Information management for the study of allergies. Inflammation & Allergy - Drug Targets, 5 1: 35-42. doi:10.2174/187152806775269277 36   Cited 4 times in Scopus4 0
Brusic, V., August, J. T. and Petrovsky, N. (2005) Information technologies for vaccine research. Expert Review of Vaccines, 4 3: 407-417. doi:10.1586/14760584.4.3.407 41   19 Cited 22 times in Scopus22 0
Brusic, V and Zeleznikow, J (1999) Knowledge discovery and data mining in biological databases. Knowledge Engineering Review, 14 3: 257-277. doi:10.1017/S0269888999003069 109   10 0
Khan, M., Heiny, T., Lee, K.X., Srinivasan, N., Tan,, August, J.T. and Brusic, V (2006). Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus. In: S. Ranganathan, M. Tammi, M. Gribskov and T.W. Tan, APBioNet - Fifth International Conference on Bioinformatics. InCoB2006, New Dehli, India, (1-12). 18-20 December 2006. doi:10.1186/1471-2105-7-S5-S4 31   17 Cited 21 times in Scopus21 0
Ostrout, N. D., McHugh, M. M., Tisch, D. J., Moormann, A. M., Brusic, V. and Kazura, J. W. (2007) Long-term T cell memory to human leucocyte antigen-A2 supertype epitopes in humans vaccinated against smallpox. Clinical And Experimental Immunology, 149 2: 265-273. doi:10.1111/j.1365-2249.2007.03401.x 50   4 Cited 6 times in Scopus6 0
Yu, K, Petrovsky, N, Schonbach, C, Koh, JLY and Brusic, V (2002) Methods for prediction of peptide binding to MHC molecules: A comparative study. Molecular Medicine, 8 3: 137-148. 50   83
Brusic, V, Rudy, G, Kyne, AP and Harrison, LC (1997) MHCPEP, a database of MHC-binding peptides: Update 1996. Nucleic Acids Research, 25 1: 269-271. doi:10.1093/nar/25.1.269 70   19 Cited 20 times in Scopus20 0
Brusic, V, Rudy, G and Harrison, LC (1998) MHCPEP, a database of MHC-binding peptides: update 1997. Nucleic Acids Research, 26 1: 368-371. doi:10.1093/nar/26.1.368 80   142 Cited 163 times in Scopus163 0
Hon, L, Abernethy, NF, Brusic, V, Chai, J and Altman, RB (1998) MHCWeb: Converting a WWW database into a knowledge-based collaborative environment. Journal of The American Medical Informatics Association, 947-951. 33   0
Fry, BG, Wuster, W, Kini, RM, Brusic, V, Khan, A, Venkataraman, D and Rooney, AP (2003) Molecular evolution and phylogeny of elapid snake venom three-finger toxins. Journal of Molecular Evolution, 57 1: 110-129. doi:10.1007/s00239-003-2461-2 92   153 Cited 151 times in Scopus151 3
Brusic, V, Zeleznikow, J and Petrovsky, N (2000) Molecular immunology databases and data repositories. Journal of Immunological Methods, 238 1-2: 17-28. doi:10.1016/S0022-1759(00)00159-9 61   18 Cited 18 times in Scopus18 0
Brusic, V, Rudy, G and Harrison, LC (1997) Molecular mimicry from hypothesis towards evidence. Immunology Today, 18 2: 95-96. doi:10.1016/S0167-5699(97)84244-2 25   4 0
Zhang, Guang Lan, Khan, Asif M., Srinivasan, Kellathur N., August, J.Thomas and Brusic, Vladimir (2005) MULTIPRED: A computational system for prediction of promiscuous HLA binding peptides. Nucleic Acids Research, 33 W172-W179. doi:10.1093/nar/gki452 100   70 Cited 95 times in Scopus95 0
Zhang, L. F., Khan, A.M., Srinivasan, K.N., August, J.T. and Brusic, V. (2005) Neural models for predicting viral vaccine targets. Journal of Bioinformatics and Computational Biology, 3 5: 1207-1225. doi:10.1142/S0219720005001466 41   Cited 18 times in Scopus18 0
Zhang, G. L., Srinivasan, K. N., Veeramani, A., August, J. T. and Brusic, V. (2005) PREDBALB/c: a system for the prediction of peptide binding to H2(d) molecules, a haplotype of the BALB/c mouse. Nucleic Acids Research, 33 W180-W183. doi:10.1093/nar/gki479 135   28 Cited 34 times in Scopus34 0
Brusic, V, Rudy, G, Honeyman, M, Hammer, J and Harrison, L (1998) Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network. Bioinformatics, 14 2: 121-130. doi:10.1093/bioinformatics/14.2.121 51   176 0
Brusic, V, Petrovsky, N, Zhang, GL and Bajic, VB (2002) Prediction of promiscuous peptides that bind HLA class I molecules. Immunology And Cell Biology, 80 3: 280-285. doi:10.1046/j.1440-1711.2002.01088.x 69   60 Cited 72 times in Scopus72 0
Bozic, I, Zhang, GL and Brusic, V (2005) Predictive vaccinology: Optimisation of predictions using support vector machine classifiers. Intelligent Data Engineering And Automated Learning Ideal 2005, Proceedings, 3578 375-381. 73   19 Cited 15 times in Scopus15

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