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Atlin, G. N., Cooper, M. and Bjornstad, A. (2001) A comparison of formal and participatory breeding approaches using selection theory. Euphytica, 122 3: 463-475. doi:10.1023/A:1017557307800 70   39 Cited 45 times in Scopus45 0
Nadella, K. D., Peake, A. S., Bariana, H. S., Cooper, M., Godwin, I. D. and Carroll, B. J. (2002) A rapid PCR protocol for marker assisted detection of heterozygotes in segregating generations involving 1BL/1RS translocation and normal wheat lines. Australian Journal of Agricultural Research, 53 8: 931-938. doi:10.1071/AR00088 248   7 Cited 7 times in Scopus7 0
Banziger, M and Cooper, M (2001) Breeding for low input conditions and consequences for participatory plant breeding: Examples from tropical maize and wheat. Euphytica, 122 3: 503-519. doi:10.1023/A:1017510928038 78   56 Cited 60 times in Scopus60 0
Jordan, D., Tao, Y. Z., Henzell, R. G., Godwin, I. D., Cooper, M. and McIntyre, C. L. (2005) Comparison of identity by descent and identity by state for detecting genetic regions under selection in a sorghum pedigree breeding program. Molecular Breeding, 14 4: 441-454. doi:10.1007/s11032-005-0901-y 353   10 Cited 9 times in Scopus9 0
Kruger, N., Cooper, M. and Podlich, D. (2002). Comparison of phenotypic, marker and marker-assisted selection strategies in an S1 family recurrent selection strategy. In: J. A. McComb, Plant breeding for the 11th millenium : proceedings of the 12th Australasian Plant Breeding Conference. 12th Australasian Plant Breeding Conference, Perth, Western Australia, (696-701). 15-20 September, 2002. 67  
Cooper, M., Podlich, D., Micallef, K. P., Smith, O. S., Jensen, N. M., Chapman, S. C. and Kruger, N. L. (2002). Complexity, quantitative traits and plant breeding: a role for simulation modelling in the genetic improvement of crops. In M. S. Kang (Ed.), Quantitative Genetics, Genomics and Plant Breeding (pp. 143-166) Wallingford, UK: CAB International. 81  
Cooper, M. (1999) Concepts and strategies for plant adaptation research in rainfed lowland rice. Field Crops Research, 64 1-2: 13-34. doi:10.1016/S0378-4290(99)00048-9 90   29 Cited 31 times in Scopus31 0
Fukai, S. and Cooper, M. (2001). Development of drought resistant cultivars for rainfed lowland rice-experience from northeast Thailand and surrounding area. In: The impact of Agricultural Research for Development in Southeast Asia. The Impact of Agricultural Research for Development in SE Asia, Phnom Penh, Cambodia, (185-194). 24-26 October 2000. 133  
Qiao, C., DeLacy, I. H., Cooper, M. and Basford, K. E. (1999). Effect of check genotypes on the combined analysis of wheat breeding multi-environment trials. In: P. Williamson, P. Banks, I. Haak, J. Thompson and A. Campbell, Proceedings of the Ninth Assembly of the Wheat Breeding Society of Australia. Vision 2020, The Univ. of Southern Qld, Toowoomba, (227-229). 27 September - 1 October 1999. 77  
Chenu, K., Cooper, M., Hammer, G. L., Mathews, K. L., Dreccer, M. F. and Chapman, S. C. (2011) Environment characterization as an aid to wheat improvement: Interpreting genotype-environment interactions by modelling water-deficit patterns in north-eastern Australia. Journal of Experimental Botany, 62 6: 1743-1755. doi:10.1093/jxb/erq459 48   36 Cited 33 times in Scopus33 0
Chapman, S, Cooper, M, Podlich, D and Hammer, G (2003) Evaluating plant breeding strategies by simulating gene action and dryland environment effects. Agronomy Journal, 95 1: 99-113. 101   86 Cited 86 times in Scopus86
Jahufer, M. Z. Z., Cooper, M., Bray, R. A. and Ayres, J. F. (1999) Evaluation of white clover (Trifolium repens L.) populations for summer moisture stress adaptation in Australia. Australian Journal of Agricultural Research, 50 4: 561-574. doi:10.1071/A98141 253   6 0
Fukai, S. and Cooper, M. (2002). Field screening for adaptability in drought-prone rainfed lowland rice: ACAIR experience in Thailand and Laos. In: N.P. Saxena and J.C. O'Toole, Field Screening for Drought Tolerance in Crop Plants with Emphasis on Rice: Proceedings of an International Workshop on Field Screening for Drought Tolerance in Rice. Internl Wksp on Field Screening for Drought Tolerance in Rice, Patencheru, India, (61-62). 11-14 December, 2000. 174  
Pantuwan, G., Fukai, S., Cooper, M., Rajatasereekul, S. and O'Toole, J.C. (2001). Field screening for drought resistance. In: S. Fukai and J. Basnayake, Increased Lowland Rice Production in the Mekong Region. Increased Lowland Rice Production in the Mekong Region, Vientiane, Laos, (69-77). 30 October - 2 November, 2000. 59  
Susanto, D., Cooper, M., Carroll, B. J. and Godwin, I. D. (2002). Genetic diversity among the 13 wheat lines used to create base populations for yield improvement by recurrent selection in the Germplasm Enhancement Program. In: J. A. McComb, Plant breeding for the 11th millenium : proceedings of the 12th Australasian Plant Breeding Conference. 12th Australasian Plant Breeding Conference, Perth, Western Australia, (870-874). 15-20 September, 2002. 139  
Chapman, S. C., Cooper, M., Butler, D. G. and Henzell, R. G. (2000) Genotype by environment interactions affecting grain sorghum. I. Characteristics that confound interpretation of hybrid yield. Australian Journal of Agricultural Research, 51 2: 197-207. doi:10.1071/AR99020 115   28 Cited 34 times in Scopus34 0
Cooper, M. and Podlich, D. (1999). Genotype x environment interactions, selection response and heterosis. In J. G. Coors and S. Pandey (Ed.), The Genetics and Exploitation of Heterosis in Crops (pp. 81-92) Madison, Wisconsin, USA: American Society of Agronomy, Crop Science Society of America, Soil Science Society.... 61  
Sibounheuang, V., Basnayake, J. W. M., Fukai, S. and Cooper, M. (2001). Genotypic variation in water protential at different positions and water conductance in rice. In: Proceedings of the 10th Australian Agronomy Conference. 10th Australian Agronomy Conference, Hobart, Tas, (1-6). 28 January - 1 February, 2001. 74  
Mathews, K. L., Chapman, S. C., Trethowan, R., Pfeiffer, W., van Ginkel, M., Crossa, J., Payne, T., DeLacy, I., Fox, P. N. and Cooper, M. (2007) Global adaptation patterns of Australian and CIMMYT spring bread wheat. Theoretical And Applied Genetics, 115 6: 819-835. doi:10.1007/s00122-007-0611-4 87   15 Cited 17 times in Scopus17 0
Kamoshita, A., Fukai, S., Muchow, R. C. and Cooper, M. (1999) Grain nitrogen concentration differences among three sorghum hybrids with similar grain yield. Australian Journal of Agricultural Research, 50 2: 137-145. doi:10.1071/A98029 59   4 0
Cooper, M., Fukai, S. and Wade, L. J. (1999) How can breeding contribute to more productive and sustainable rainfed lowland rice systems?. Field Crops Research, 64 1-2: 199-209. doi:10.1016/S0378-4290(99)00060-X 47   11 Cited 12 times in Scopus12 0
Jahufer, M. Z. Z., Cooper, M., Ayres, J. F. and Bray, R. A. (2002) Identification of research to improve the efficiency of breeding strategies for white clover in Australia - a review. Australian Journal of Agricultural Research, 53 3: 239-257. doi:10.1071/AR01110 65   26 Cited 24 times in Scopus24 0
Mathews, Ky L., Trethowan, Richard, Milgate, Andrew W., Payne, Thomas, van Ginkel, Maarten, Crossa, Jose, DeLacy, Ian, Cooper, Mark and Chapman, Scott C. (2011) Indirect selection using reference and probe genotype performance in multi-environment trials. Crop and Pasture Science, 62 4: 313-327. doi:10.1071/CP10318 42   6 Cited 4 times in Scopus4 0
Mathews, Ky L., Trethowan, Richard, Milgate, Andrew, Payne, Thomas, van Ginkel, Maarten, Crossa, Jose, DeLacy, Ian H., Cooper, Mark and Chapman, Scott C. (2010). Indirect selection using reference genotype performance in a global spring wheat multi-environment trial. In: N. I. Dzyubenko, 8th International Wheat Conference: Abstracts of oral poster presentations. 8th International Wheat Conference, St Petersburg, Russia, (115-115). 1-4 June 2010. 26  
Ouk, M., Fukai, S., Cooper, M. and Nesbitt, H.J. (2001). Influence of seedling time and seedling age at time of transplanting on the productivity of rainfed lowland rice with different level so fphotoperiod sensitivity. In: S. Fukai and J. Basnayake, Increased Lowland Rice Produciton in the Mekong Region. Increased Lowland Rice Production in the Mekong Region, Vientiane, Laos, (259-270). 30 October - 2 November, 2000. 46  
Mathews, K. L., Chapman, S.C., Butler, D., Cooper, M., Delacy, I. H., Sheppard, J. A., Kelly, A. and Sahama, T. R. (2002). Inter-annual changes in genotypic and genotype by environment variance components for different stages of the Northern Wheat Improvement Program. In: J. A. McComb, Plant breeding for the 11th millenium : proceedings of the 12th Australasian Plant Breeding Conference. 12th Australasian Plant Breeding Conference, Perth, Western Australia, (650-654). 15-20 December, 2002. 81  
Jongdee, B., Fukai, S. and Cooper, M. (2002) Leaf water potential and osmotic adjustment as physiological traits to improve drought tolerance in rice. Field Crops Research, 76 2-3: 153-163. doi:10.1016/S0378-4290(02)00036-9 353   77 Cited 100 times in Scopus100 0
Sibounheuang, V., Basnayake, J. W. M., Fukai, S. and Cooper, M. (2001). Leaf-water potential as a drought resistance character in rice. In: S. Fukai and J. Basnayake, Increased Lowland Rice Production in the Mekong Region. Increased Lowland Rice Production in the Mekong Region, Vientiane, Laos, (86-95). 30 October - 2 November, 2000. 106  
Chapman, S.C., Hammer, G. L., Podlich, D. and Cooper, M. (2002). Linking biophysical and genetic models to integrate physiology, molecular biology and plant breeding. In M.S. Kang (Ed.), Quantitative Genetics, Genomics and Plant Breeding 1 ed. (pp. 167-187) Wallingford, UK: CAB International. 88  
Forbes, Josephine M. and Cooper, Mark E. (2013) Mechanisms of diabetic complications. Physiological Reviews, 93 1: 137-188. doi:10.1152/physrev.00045.2011 15   90 Cited 103 times in Scopus103 1
Fukai, S., Basnayake, J. W. M. and Cooper, M. (2000). Modeling water availability, crop growth, and yield of rainfed lowland rice genotypes in northeast Thailand. In: T.P. Tuong, S.P. Kam, L. Wade, S. Pandey, B. A. M. Bouiman and B. Hardy, Characterizing and Understanding Rainfed Environments. Characterizing and Understanding Rainfed Environments, Bali, Indonesia, (111-130). 5-9 December, 1999. 85  
Cooper, M., Podlich, D. and Jensen, N. (1999). Modelling breeding programs: Genes, phenotypes and breeding strategies. In: P. Williamson, P. Banks, I. Haak, J. Thompson and A. Campbell, Proceedings of the Ninth Assembly of the Wheat Breeding Society of Australia. Vision 2020, The Univ. of Southern Qld, Toowoomba, (121-128). 27 September - 1 October 1999. 35  
Cooper, M., Podlich, D. and Micallef, K. P. (2001). Modelling plant breeding programs: applications to forage crops. In: G. Spangenberg, Molecular Breeding of Forage Crops: Proceedings of the 2nd International Symposium, Molecular Breeding of Forage Crops. 2nd International Symposium, Molecular Breeding of Forage Crops, Lorne and Hamilton, Victoria, Australia, (67-82). 19-24 November 2000. 32  
Podlich, D. and Cooper, M. (1999) Modelling plant breeding programs as search strategies on a complex response surface. Lecture Notes in Computer Science, 1585 171-178. doi:10.1007/3-540-48873-1 78   0
Cruickshank, A. W., Cooper, M. and Ryley, M. J. (2002) Peanut resistance to Sclerotinia minor and S-sclerotiorum. Australian Journal of Agricultural Research, 53 10: 1105-1110. doi:10.1071/AR02013 62   4 Cited 7 times in Scopus7 0
Cooper, M., Godwin, I. D., Henzell, R. G., Jordan, D., McIntyre, C. L. and Tao, Y. Z. (1999). Pedigree analysis provides a useful adjunct to QTL analysis in sorghum. In: Proceedings of the 11th Australian Plant Breeding Conference. 11th Australian Plant Breeding Conference, Stamford Grand Hotel, Glenelg, SA, (222-223). 19-23 April 1999. 61  
Fukai, S. and Cooper, M. (1999). Plant breeding strategies for rainfed lowland rice in Northeast Thailand. In: T. Horie, S. Geng, T. Amano, T. Inamura and T. Shiraiwa, Proceedings of the World Food Security and Crop Production Technologies for Tomorrow. World Food Security and Crop Production Technologies for Tomorrow, Kyoto International Conference Hall, Kyoto, Japan, (153-156). 8-9 October, 1998. 69  
Wang, J., Podlich, D. W., Cooper, M. and DeLacy, I. H. (2001) Power of the joint segregation analysis method for testing mixed major-gene and polygene inheritance models of quantitative traits. Theoretical And Applied Genetics, 103 5: 804-816. doi:10.1007/s001220100628 108   14 Cited 20 times in Scopus20 0
Cooper, M. and Hammer, G. L. (2005) Preface to Special Issue: Complex traits and plant breeding - can we understand the complexities of gene-to-phenotype relationships and use such knowledge to enhance plant breeding outcomes?. Australian Journal Of Agricultural Research, 56 9: 869-872. doi:10.1071/AR05151 116   10 Cited 9 times in Scopus9 0
Qiao, C., Basford, K. E., Cooper, M., DeLacy, I. H., Phillips, I. G. and Matassa, V. J. (1999). Quantifying the effect of analytical methods on estimates of heritability from wheat multi-environment trials. In: Biometrics 99, Program and Abstracts. Biometrics 99, Univ. of Tas., Hobart, Tas, Aust., (23). 12-16 December 1999. 76  
Cooper, M., Rajatasereekul, S., Immark, S., Fukai, S. and Basnayake, J. W. M. (1999) Rainfed lowland rice breeding strategies for northeast Thailand. I. Genotypic variation and genotype x environment interactions for grain yield. Field Crops Research, 64 1-2: 131-151. doi:10.1016/S0378-4290(99)00056-8 113   59 Cited 63 times in Scopus63 0
Cooper, M., Rajatasereekul, S., Immark, S., Fukai, S., Basnayake, J. W. M. and Podlich, D. (1999) Rainfed lowland rice breeding strategies for northeast Thailand. II. Comparison of interstation and intrastation selection. Field Crops Research, 64 1-2: 153-176. doi:10.1016/S0378-4290(99)00047-7 83   19 Cited 0 times in Scopus0 0
Fukai, S., Pantuwan, G., Jongdee, B. and Cooper, M. (1999) Screening for drought resistance in rainfed lowland rice. Field Crops Research, 64 1-2: 61-74. doi:10.1016/S0378-4290(99)00051-9 129   65 Cited 76 times in Scopus76 0
Chapman, S. C., Hammer, G. L., Podlich, D. and Cooper, M. (2002). Simulated influence of drought incidence on conventional and marker-assisted selection in sorghum breeding. In: J. A. McComb, Plant breeding for the 11th millenium : proceedings of the 12th Australasian Plant Breeding Conference. 12th Australasian Plant Breeding Conference, Perth, Western Australia, (468-473). 15-20 September, 2002. 107  
Wang, JK, van Ginkel, M, Trethowan, R, Ye, GY, DeLacy, I, Podlich, D and Cooper, M (2004) Simulating the effects of dominance and epistasis on selection response in the CIMMYT wheat breeding program using QuCim. Crop Science, 44 6: 2006-2018. 139   33 Cited 32 times in Scopus32
van Eeuwijk, F. A., Cooper, M., DeLacy, I. H., Ceccarelli, S. and Grando, S. (2001) Some vocabulary and grammar for the analysis of multi-environment trials, as applied to the analysis of FPB and PPB trials. Euphytica, 122 3: 477-490. doi:10.1023/A:1017591407285 80   24 Cited 26 times in Scopus26 0
Gororo, N. N., Eagles, H. A., Ogbonnaya, F. C., Eastwood, R. F., Podlich, D., Cooper, M. and Howes, N. (1999). Strategies for the efficient utilisation of molecular markers. In: P. Williamson, P. Banks, I. Haak, J. Thompson and A. Campbell, Proceedings of the Ninth Assembly of the Wheat Breeding Society of Australia. Vision 2020, The Univ. of Southern Qld, Toowoomba, (132-133). 27 September - 1 October 1999. 28  
Peake, Allan S., Gilmour, Arthur and Cooper, Mark (2011) The 1BL/1RS translocation decreases grain yield of spring wheat germplasm in low yield environments of north-eastern Australia. Crop and Pasture Science, 62 4: 276-288. doi:10.1071/CP10219 15   2 Cited 2 times in Scopus2 0
Poppi, D. P., Jensen, N., Sheppard, J. A. and Cooper, M. (2000). The digestibility and some associated nutritional parameters of a new wheat cultivar (Seri 82-Aus) and barley (Gilbert) for sheep. In: G. Stone, Asian-Australasian Journal of Animal Sciences. Animal Production for a Consuming World, UNSW, Sydney, (219-221). 3-7 July, 2000. 31  
Cooper, Mark and Podlich, Dean W. (2002) The E(NK) model: extending the NK model to incorporate gene-by-environment interactions and epistasis for diploid genomes. Complexity, 7 6: 31-47. doi:10.1002/cplx.10044 53   0

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