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Man, Bradley, Su, Xun-Cheng, Liang, Haobo, Simonsen, Shane, Huber, Thomas, Messerle, Barbara A. and Otting, Gottfried (2010) 3-mercapto-2, 6-pyridinedicarboxylic acid: A small lanthanide-binding tag for protein studies by NMR spectroscopy. Chemistry: A European Journal, 16 12: 3827-3832. doi:10.1002/chem.200902904 43   23 Cited 23 times in Scopus23 0
O'Brien, M., Byers, H. K., Huber, T. L., Jacobsen, I., Bulmer, M., Burgh, G., Crosthwaite, C. A., Harrison, J. and Hughes, C. P. (2005). Actualising research-led teaching and learning within university curriculum. In: Challenging issues for teaching and learning in 21st century. Effective Teaching and Learning Conference, The University of Queensland, Brisbane, Australia, (). 3-4 November, 2005. 216  
Su, X.-C., Man, B., Beeren, S., Liang, H., Simonsen, S., Christophe Schmitz, Huber, Thomas L., Messerle, B.A. and Otting, G. (2008) A dipicolinic acid tag for rigid lanthanide tagging of proteins and paramagnetic NMR spectroscopy. Journal of the American Chemical Society, 130 32: 10486-10487. doi:10.1021/ja803741f 125   64 Cited 66 times in Scopus66 0
Robin, G., Cowieson, N.P., Guncar, G., Forwood, J.K., Listwan, P., Hume, D.A., Kobe, B., Martin, J.L. and Huber, T.L. (2008). A general target selection method for crystallographic proteomics. In Kobe, B., Guss, M. and Huber, T.L. (Ed.), Structural Proteomics: High-Throughput Methods 1st ed. (pp. 27-35) Totowa, NJ, USA: Humana Press. 71  
Aagaard, A., Listwan, P., Cowieson, N. P., Huber, T. L., Ravasi, T., Wells, C. A., Flanagan, J. U., Kellie, S., Hume, D. A., Kobe, B. and Martin, J. L. (2005) An inflammatory role for the mammalian carboxypeptidase inhibitor latexin: Relationship to cystatins and the tumor suppressor TIG1. Structure, 13 2: 309-317. doi:10.1016/j.str.2004.12.013 61   39 Cited 40 times in Scopus40 0
Hamilton, N. and Huber, T. (2008). An Introduction to Protein contact Prediction. In Jonathan M. Keith (Ed.), Bioinformatics (pp. 87-104) USA: Humana Press. doi:10.1007/978-1-60327-429-6-3 74   Cited 4 times in Scopus4 0
Mouradov, D. A., Forwood, J. K., Ross, I. L., King, G. F., Sinz, A., Kobe, B. and Huber, T. L. (2006). Application of bioinformatic/biochemical hybrid approach to determine the structure of protein complexes and multi-domain proteins. In: ComBio 2006 : combined conference abstracts, Brisbane Convention Centre, Brisbane, Queensland, 24 September to 28 September 2006. ComBio 2006, Brisbane, Australia, (). 24-28 September, 2006. 79  
Huber, T, Faulkner, G and Hugenholtz, P (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics, 20 14: 2317-2319. doi:10.1093/bioinformatics/bth226 223   1014 Cited 1024 times in Scopus1024 9
Connors, N K, Niebert, M, Huber, T L and Middelberg, A P J (2006). Biomolecular engineering for improved processing of virus-like particles. In: ComBio 2006. ComBio 2006, Brisbane, (Abstract). 24-28 Sept, 2006. 75  
Hugenholtz, P and Huber, T (2003) Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases. International Journal of Systematic And Evolutionary Microbiology, 53 1: 289-293. doi:10.1099/ijs.0.02441-0 58   136 Cited 148 times in Scopus148 0
Huber, T. L. and Kobe, B. (2004) Comment on 'Protein isoelectric point as a predictor for increased crystallization screening efficiency'. Bioinformatics, 20 14: 2169-2170. doi:10.1093/bioinformatics/bth452 70   1 Cited 1 times in Scopus1 0
Rendell, AP, Bliznyuk, A, Huber, T, Nobes, RH, Akhmatskaya, EV, Fruchtl, HA, Kung, PWC, Milman, V and Lung, H (2000) Computational chemistry on Fujitsu vector-parallel processors: Development and performance of applications software. Parallel Computing, 26 7-8: 887-911. doi:10.1016/S0167-8191(00)00017-X 66   5 Cited 6 times in Scopus6 0
Cowieson, Nathan P., King, Gordon, Cookson, David, Ross, Ian, Huber, Thomas, Hume, David A., Kobe, Bostjan and Martin, Jennifer L. (2008) Cortactin adopts a globular conformation and bundles actin into sheets. The Journal of Biological Chemistry, 283 23: 16187-16193. doi:10.1074/jbc.M708917200 76   19 Cited 19 times in Scopus19 0
Mierke, Dale F., Huber, Thomas and Kessler, Horst (1994) Coupling constants again: Experimental restraints in structure refinement. Journal of Computer-Aided Molecular Design, 8 1: 29-40. doi:10.1007/BF00124347 35   18 Cited 12 times in Scopus12 0
Kobe, Bostjan, Guncar, Gregor, Buchholz, Rebecca, Huber, Thomas, Maco, Bohumil, Cowieson, Nathan, Martin, Jennifer L., Marfori, Mary and Forwood, Jade K. (2008) Crystallography and protein-protein interactions: Biological interfaces and crystal contacts. Biochemical Society Transactions, 36 6: 1438-1441. doi:10.1042/BST0361438 134   21 Cited 22 times in Scopus22 0
Schmitz, C, John, M., Park,, Dixon, E, Otting,, Pintacuda, and Huber, T L (2006). Echidna - fully automatic, structure-based NH assignment of paramagnetic proteins. In: ComBio 2006. ComBio 2006, Brisbane, (Abstract). 24-28 Sept, 2006. 55  
Schmitz, C., Johns, R., Park, Young, Dixon, N. E., Otting, G., Pintacuda, G. and Huber, T L (2006) Efficient -tensor determination and NH assignment of paramagnetic proteins. Journal of Biomolecular Nmr, 35 2: 79-87. doi:10.1007/s10858-006-9002-4 67   33 Cited 33 times in Scopus33 0
Guncar, G, Forwood, J K, Mouradov, D. A., Serek, R. A., Mafori, M., Huber, T L, Martin, J L and Kobe, B (2006). Exit on the other side please; crystal structure of the ACOT7 C-terminal domain. In: ComBio 2006. ComBio 2006, Brisbane, (Abstract). 24-28 Sept, 2006. 43  
Pintacuda, G., Huber, T., Keniry, M. A., Park, A. Y., Dixon, N. E. and Otting, G. (2006). Fast Assignments of 15N-HSQC Spectra of Proteins by Paramagnetic Labeling. In Graham A. Webb (Ed.), Modern Magnetic Resonance: Applications in Biological, Medical and Pharmaceutical Sciences (pp. 1245-1250) Netherlands: Springer - Verlag. 91  
Pintacuda, Guido, Keniry, Max A., Huber, Thomas, Park, Ah Young, Dixon, Nicholas E. and Otting, Gottfried (2004) Fast Structure-Based Assignment of 15N HSQC Spectra of Selectively 15N-Labeled Paramagnetic Proteins. Journal of the American Chemical Society, 126 9: 2963-2970. doi:10.1021/ja039339m 166   61 Cited 57 times in Scopus57 1
Puri, M., Robin, G., Cowieson, N., Forwood, J. K., Listwan, P., Hu, S. H., Guncar, G., Huber, T., Kellie, S., Hume, D. A., Kobe, B. and Martin, J. L. (2006) Focusing in on structural genomics: The University of Queensland structural biology pipeline. Biomolecular Engineering, 23 6: 281-289. doi:10.1016/j.bioeng.2006.09.002 104   6 Cited 9 times in Scopus9 0
Reith, Dirk, Huber, Thomas, Muller-Plathe, Florian and Torda, Andrew E. (2001) Free energy approximations in simple lattice proteins. Journal of Chemical Physics, 114 11: 4998-5005. doi:10.1063/1.1350575 45   3 Cited 3 times in Scopus3 0
DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., KELLER, K., Huber, T. L., Dalevi, D., Hu, P. and Andersen, G. L. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology, 72 7: 5069-5072. doi:10.1128/AEM.03006-05 104   1458 Cited 1469 times in Scopus1469 1
Mouradov, Dmitri, Kobe, Bostjan, Dixon, Nicholas E. and Huber, Thomas (2010). Hybrid methods for protein structure prediction. In Huzefa Rangwala and George Karypis (Ed.), Introduction to protein structure prediction: Methods and algorithms (pp. 265-277) Hoboken, New Jersey, USA: John Wiley and Sons, Inc.. 59 1
Hadler, K.ieran S., Huber, Thomas, Cassady, A. Ian, Weber, Jane, Robinson, Jodie, Burrows, Allan, Kelly, Gregory, Guddat, Luke W., Hume, David A., Schenk, Gerhard and Flanagan, Jack U. (2008) Identification of a non-purple tartrate-resistant acid phosphatase: An evolutionary link to Ser/Thr protein phosphatases?. BMC Research Notes, 1 1-8. doi:10.1186/1756-0500-1-78 75   Cited 3 times in Scopus3 0
King, G. J., Jones, A., Kobe, B., Huber, T., Mouradov, D., Hume, D. A. and Ross, I. L. (2008) Identification of Disulfide-containing chemical cross-links in proteins using MALDI-TOF/TOF-MAss spectrometry. Analytical Chemistry, 80 13: 5036-5043. doi:10.1021/ac702277q 49   15 Cited 16 times in Scopus16 0
Su, X., McAndrew, K., Huber, T. and Otting, G. (2008) Lanthanide-binding peptides for NMR measurements of residual dipolar couplings and paramagnetic effects from multiple angles. Journal of the American Chemical Society, 130 5: 1681-1687. doi:10.1021/ja076564l 93   52 Cited 53 times in Scopus53 0
Huber, Thomas, Torda, Andrew E. and van Gunstere, Wilfred F. (1994) Local elevation: A method for improving the searching properties of molecular dynamics simulation. Journal of Computer-Aided Molecular Design, 8 6: 695-708. doi:10.1007/BF00124016 33   212 Cited 226 times in Scopus226 3
Gladwin, B. A. and Huber, T. L. (2004). Long time scale molecular dynamics using least action. In: C.E.M. Pearce, ANZIAM J.. 11th Biennial Computational Techniques and Applications Conference: CTAC - 2003, Sydney, (534-550). July 2003. 78  
Mouradov, D., Craven, A., Forwood, J. K., Flanagan, J. U., Garcia-Castellanos, R., Gomis-Ruth, F. X., Hume, D. A., Martin, J. L., Kobe, B. and Huber, T. (2006) Modelling the structure of latexin-carboxypeptidase A complex based on chemical cross-linking and molecular docking. Protein Engineering Design & Selection, 19 1: 9-16. doi:10.1093/protein/gzi070 84   11 Cited 12 times in Scopus12 0
Nanzer, Alain P., Huber, Thomas, Torda, Andrew E. and van Gunsteren, Wilfred F. (1996) Molecular dynamics simulation using weak-coupling NOE distance restraining. Journal of Biomolecular NMR, 8 3: 285-291. doi:10.1007/BF00410327 40   7 Cited 7 times in Scopus7 0
Schmitz, C., Stanton-Cook, M., Su, X.-C., Otting, G. and Huber, T.L. (2008) Numbat: an interactive software tool for fitting Delta chi-tensors to molecular coordinates using pseudocontact shifts. Journal of Biomolecular NMR, 41 3: 179-189. doi:10.1007/s10858-008-9249-z 135   59 Cited 61 times in Scopus61 0
Huber, Thomas, Torda, Andrew E. and van Gunsteren, Wilfred F. (1996) Optimization methods for conformational sampling using a Boltzmann weighted mean field approach. Biopolymers., 39 1: 103-114. doi:10.1002/(SICI)1097-0282(199607)39:1<103::AID-BIP11>3.0.CO;2-H 44   20 0
Meng, Weining, Forwood, Jade K., Guncar, Gregor, Robin, Gautier, Cowieson, Nathan P., Listwan, Pawel, Mouradov, Dmitri, King, Gordon, Ross, lan L., Robinson, Jodie, Puri, Munish, Hill, Justine M., Kellie, Stuart, Huber, Thomas, Hume, David A., Martin, Jennifer L. and Kobe, Bostjan (2008). Overview of the pipeline for structural and functional characterization of macrophage proteins at the University of Queensland. In B. Kobe, M. Guss and T. L. Huber (Ed.), Structural proteomics: High-throughput methods (pp. 577-587) Totowa, N.J.: Humana Press. 100  
Forrest, Alistair R. R., Ravasi, Timothy, Taylor, Darrin, Huber, Thomas L., Hume, David A., RIKEN GER Group, GSL Members and Grimmond, Sean (2003) Phosphoregulators: Protein kinases and protein phosphatases of mouse. Genome Research, 13 6B: 1443-1454. doi:10.1101/gr.954803 39   31 Cited 33 times in Scopus33 0
Cowieson, N. P., Listwan, P., Kurz, M., Aagaard, A., Ravasi, T., Wells, C. A., Huber, T. L., Hume, D. A., Kobe, B. and Martin, J. L. (2005) Pilot studies on the parallel production of soluble mouse proteins in a bacterial expression system. Journal of Structural and Functional Genomics, 6 1: 13-20. doi:10.1007/s10969-005-0462-7 51   Cited 6 times in Scopus6 0
Song, J., Yuan, Z., Tan, H., Huber, T. and Burrage, K. (2007) Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure. Bioinformatics, 23 23: 3147-3154. doi:10.1093/bioinformatics/btm505 95   41 Cited 49 times in Scopus49 0
Song, Jiangning, Burrage, Kevin, Yuan, Zheng and Huber, Thomas (2006) Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information. BMC Bioinformatics, 7 124.1-124.13. doi:10.1186/1471-2105-7-124 120   48 Cited 52 times in Scopus52 0
Saunders, F W, Brinkworth, R. I., Huber, T L and Kobe, B (2006). Prediction of protein kinase substrates using sequence-structure information. In: ComBio 2006. ComBio 2006, Brisbane, (Abstract). 24-28 Sept, 2006. 40  
Saunders, N., Brinkworth, R.I., Huber, T. L., Kemp, B.E. and Kobe, B. (2008) Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites. BMC Bioinformatics, 9 245: 1-11. doi:10.1186/1471-2105-9-245 49 6 36 Cited 35 times in Scopus35 9
Hamilton, N., Burrage, K., Ragan, M. A. and Huber, T. (2004). Protein contact prediction using patterns of correlation. In: 29th Lorne Protein Conference. 29th Annual Lorne Conference on Protein Structure and Function, Lorne, Victoria, (). 8-12 February 2004. 36  
Hamilton, Nicholas, Burrage, Kevin, Ragan, Mark A. and Huber, Thomas (2004) Protein contact prediction using patterns of correlation. Proteins-structure Function And Bioinformatics, 56 4: 679-684. doi:10.1002/prot.20160 59   47 Cited 49 times in Scopus49 0
Ayers, DJ, Huber, T and Torda, AE (1999) Protein fold recognition score functions: Unusual construction strategies. Proteins-structure Function And Genetics, 36 4: 454-461. doi:10.1002/(SICI)1097-0134(19990901)36:4<454::AID-PROT9>3.0.CO;2-B 51   4 Cited 4 times in Scopus4 0
Huber, T and Torda, AE (1998) Protein fold recognition without Boltzmann statistics or explicit physical basis. Protein Science, 7 1: 142-149. 33   18
Huber, T and Torda, AE (1999) Protein sequence threading, the alignment problem, and a two-step strategy. Journal of Computational Chemistry, 20 14: 1455-1467. doi:10.1002/(SICI)1096-987X(19991115)20:14<1455::AID-JCC1>3.3.CO;2-4 43   5 0
Mouradov, Dmitri, King. Gordon, Ross, Ian L., Forwood, Jade K., Hume, David A., Sinz, Andrea, Martin, Jennifer L., Kobe, Bostjan and Huber, Thomas L. (2008). Protein structure determination using a combination of cross-linking, mass spectrometry, and molecular modeling. In Bostjan Kobe, Mitchell Guss and Thomas L. Huber (Ed.), Structural Proteomics: High Throughput Methods 1 ed. (pp. 459-474) Totowa, NJ, USA: Humana Press. 99  
Huber, Thomas and Torda, Andrew E. (2001). Protein structure prediction by threading: Force field philosophy, approaches to alignment. In Igor F. Tsigelny and Estella F. Pucher (Ed.), Protein structure prediction: Bioinformatic approach (pp. 263-296) La Jolla, California, USA: International University Line. 29  
King, G. F., Jones, A., Cowieson, N. P., Huber, T. L., Kobe, B. and Ross, I. L. (2006). Rapid identification of DTSSP crosslinked peptides using LCMALDI Tof-Tof mass spectrometry. In: ComBio 2006. ComBio 2006, Brisbane, Australia, (). 24-28 Sept, 2006. 199  
Huber, T, Russell, AJ, Ayers, D and Torda, AE (1999) Sausage: protein threading with flexible force fields. Bioinformatics, 15 12: 1064-1065. doi:10.1093/bioinformatics/15.12.1064 40   12 1
John, M., Schmitz, C., Park, A., Dixon, N., Huber, T. and Otting, G. (2007) Sequence-specific and stereospecific assignment of methyl groups using paramagnetic lanthanides. Journal of The American Chemical Society, 129 44: 13749-13757. doi:10.1021/ja0744753 90   23 Cited 23 times in Scopus23 0

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