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Krömer, Jens, Quek, Lake-Ee and Nielsen, Lars (2009) 13C-fluxomics: A tool for measuring metabolic phenotypes. Australian Biochemist, 40 3: 17-20. 166  
Behrendorff, James B. Y. H., Vickers, Claudia E., Chrysanthopoulos, Panagiotis and Nielsen, Lars K. (2013) 2,2-Diphenyl-1-picrylhydrazyl as a screening tool for recombinant monoterpene biosynthesis. Microbial Cell Factories, 12 76: 1-11. doi:10.1186/1475-2859-12-76 54   3 Cited 3 times in Scopus3 0
Blank, L., Koebmann, B. J., Nielsen, L. K. and Jensen, P. R. (2000). 43 Hemin reconstitutes the growth of an H+ -ATPase negative mutant of Lactococcus lactis. In: Jan-Hendrik S. Hofmeyr, J. M. Rohwer and J. L. Snoep, Animating the Cellular Map. 9th International Meeting on BioThermoKinetics, Stellenbosch, South Africa, (291-297). 3-7 April. 47  
Brunck, Marion E. G., Andersen, Stacey B., Timmins, Nicholas E., Osborne, Geoffrey W. and Nielsen, Lars K. (2014) Absolute counting of neutrophils in whole blood using flow cytometry. Cytometry Part A, 85 12: 1057-1064. doi:10.1002/cyto.a.22503 33   0 1
Nielsen, LK, Smyth, GK and Greenfield, PF (1992) Accuracy of the End-Point Assay for Virus Titration. Cytotechnology, 8 3: 231-236. doi:10.1007/BF02522040 31   29 Cited 26 times in Scopus26 0
Quek, Lake-Ee and Nielsen, Lars K (2014) A depth-first search algorithm to compute elementary flux modes by linear programming. BMC Systems Biology, 8 1: . doi:10.1186/s12918-014-0094-2 22   0 Cited 0 times in Scopus0 1
Fong Chong, B. and Nielsen, L. K. (2003) Aerobic cultivation of Streptococcus zooepidemicus and the role of NADH oxidase. Biochemical Engineering Journal, 16 2: 153-162. doi:10.1016/S1369-703X(03)00031-7 272   27 Cited 32 times in Scopus32 0
Dal'Molin, Cristiana Gomes de Oliveira, Quek, Lake-Ee, Palfreyman, Robin W. and Nielsen, Lars K. (2011) AlgaGEM - A genome-scale metabolic reconstruction of Algae based on Chlamydomonas reinhardtii genome. BMC Genomics, 12 Suppl. 4: s5.1-s5.10. doi:10.1186/1471-2164-12-S4-S5 84   21 Cited 17 times in Scopus17 0
Navone, Laura, Casati, Paula, Licona-Cassani, Cuauhtémoc, Marcellin, Esteban, Nielsen, Lars K., Rodriguez, Eduardo and Gramajo, Hugo (2014) Allantoin catabolism influences the production of antibiotics in Streptomyces coelicolor. Applied Microbiology and Biotechnology., 98 1: 351-360. doi:10.1007/s00253-013-5372-1 71   1 Cited 1 times in Scopus1 0
Brennan, Timothy C. R., Turner, Christopher D., Kroemer, Jens O. and Nielsen, Lars K. (2012) Alleviating monoterpene toxicity using a two-phase extractive fermentation for the bioproduction of jet fuel mixtures in Saccharomyces cerevisiae. Biotechnology and Bioengineering, 109 10: 2513-2522. doi:10.1002/bit.24536 77   18 Cited 21 times in Scopus21 1
Li, Juan, Wijffels, Gene, Yu, Yihua, Nielsen, Lars K., Niemeyer, Dominic O., Fisher, Andrew D., Ferguson, Drewe M. and Schirra, Horst Joachim (2011) Altered fatty acid metabolism in long duration road transport: An NMR-based metabonomics study in sheep. Journal of Proteome Research, 10 3: 1073-1087. doi:10.1021/pr100862t 74   6 Cited 7 times in Scopus7 0
Newland, M, Kamal, MN, Greenfield, PF and Nielsen, LK (1994) Ammonia Inhibition Hybridomas Propagated in Batch, Fed-Batch, and Continuous-Culture. Biotechnology and Bioengineering, 43 5: 434-438. doi:10.1002/bit.260430512 33   24 0
Chong, B. F. and Nielsen, L. K. (2003) Amplifying the cellular reduction potential of Streptococcus zooepidemicus. Journal of Biotechnology, 100 1: 33-41. doi:10.1016/S0168-1656(02)00239-0 91   35 Cited 37 times in Scopus37 0
Dietmair, Stefanie, Hodson, Mark P., Quek, Lake-Ee, Timmins, Nicholas E., Gray, Peter and Nielsen, Lars K. (2012) A multi-omics analysis of recombinant protein production in Hek293 cells. Plos One, 7 8: e43394.1-e43394.15. doi:10.1371/journal.pone.0043394 75   9 Cited 11 times in Scopus11 1
de Oliveira Dal'molin, Cristiana Gomes, Quek, Lake-Ee, Saa, Pedro Andres and Nielsen, Lars Keld (2015) A multi-tissue genome-scale metabolic modelling framework for the analysis of whole plant systems. Frontiers in Plant Science, 6 JAN: 1-12. doi:10.3389/fpls.2015.00004 57   Cited 0 times in Scopus0 1
Croll, T., Munro, P., Winzor, D. J., Trau, M. and Nielsen, L. K. (2003) Analysis of the phase behavior of the aqueous poly(ethylene glycol)-Ficoll system. Biotechnology Progress, 19 4: 1269-1273. doi:10.1021/bp025711a 92   3 Cited 3 times in Scopus3 0
Renouf, M. A., Wegener, M. K. and Nielsen, L. K. (2008) An environmental life cycle assessment comparing Australian sugarcane with US corn and UK sugar beet as producers of sugars for fermentation. Biomass and Bioenergy, 32 12: 1144-1155. doi:10.1016/j.biombioe.2008.02.012 238   59 Cited 67 times in Scopus67 0
Haas, Richard and Nielsen, Lars K. (2005) A physiological product-release model for baculovirus infected insect cells. Biotechnology And Bioengineering, 91 6: 768-772. doi:10.1002/bit.20565 100   6 Cited 7 times in Scopus7 0
Brumbley, S. M., Petrasovits, L., Purnell, M., O'Shea, M. G., Geijskes, J., Prakash Lakshmanan, Smith, G. R. and Nielsen, L. K. (2002). Application of biotechnology for future sugar industry diversification. In: Proceedings of the 2002 Conference of the Australian Society of Sugar Cane Technologists. 2002 Conference of the Australian Society of Sugar Cane Technologists, Cairns, Queensland, Australia, (40-46). 29 April - 2 May, 2002. 275  
Dal'Molin, C.G.D., Quek, L.E., Palfreyman, R.W., Brumbley, S.M. and Nielsen, L.K. (2010) AraGEM, a Genome-scale reconstruction of the primary metabolic network in arabidopsis. Plant Physiology, 152 2: 579-589. doi:10.1104/pp.109.148817 89   82 Cited 103 times in Scopus103 4
Leung, Andy, Trau, Matt and Nielsen, Lars Keld (2009) Assembly of multilayer PSS/PAH membrane on coherent alginate/PLO microcapsule for long-term graft transplantation. Journal of Biomedical Materials Research Part A, 88A 1: 226-237. doi:10.1002/jbm.a.31891 85   8 Cited 8 times in Scopus8 0
McQualter, R. B., Petrasovits, L. A., Gebbie, L. K., Hodson, M. P., Plan, M. R., Blackman D. M., Dal'Molin, C., Brumbley, S. M. and Nielsen, L. K. (2013). A superior catalyst for polyhydroxybutyrate production in sugarcane. In: TABBS 2013: The Australasian Bioenergy and Bioproducts Symposium, Brisbane, QLD, Australia, (). 25 October, 2013. 42  
Bruschi, Michele, Boyes, Simon J., Sugiarto, Haryadi, Nielsen, Lars K. and Vickers, Claudia E. (2012) A transferable sucrose utilization approach for non-sucrose-utilizing Escherichia coli strains. Biotechnology Advances, 30 5: 1001-1010. doi:10.1016/j.biotechadv.2011.08.019 69   5 Cited 9 times in Scopus9 0
Nielsen, LK, Niloperbowo, W, Reid, S and Greenfield, PF (1992) Avoiding Rapid Growth At High Cell Densities - a Potentially Important Optimization Criterion for Hybridoma Cultures. Cytotechnology, 9 1-3: 21-27. doi:10.1007/BF02521728 24   6 Cited 5 times in Scopus5 0
Chan, Leslie, Reid, Steven and Nielsen, Lars Keld (2010). Baculovirus kinetics, insect cell culture. In Michael C. Flickinger (Ed.), Encyclopedia of industrial biotechnology: Bioprocess, bioseparation, and cell technology (pp. 1-24) Hoboken, N.J. USA: John Wiley and Sons Inc.. doi:10.1002/9780470054581 113   0
Doran, Michael R., Aird, Ian Alexander, Marturana, Flavia, Timmins, Nicholas, Atkinson, Kerry and Nielsen, Lars K. (2012) Bioreactor for blood product production. Cell Transplantation, 21 6: 1235-1244. doi:10.3727/096368911X627363 92   1 Cited 1 times in Scopus1 6
Nielsen, LK (1999) Bioreactors for hematopoietic cell culture. Annual Review Biomedical Engineering, 1 129-152. doi:10.1146/annurev.bioeng.1.1.129 105   50 0
Dal'Molin, C, Quek, LE and Nielsen, LK (2008). BIOT 273-Genome-scale metabolic network model of Arabidopsis. In: Abstracts of Papers of The American Chemical Society. 236th National Meeting of the American-Chemical-Society, Philadelphia, PA, USA, (). 17-21 August, 2008. 75   0
Timmins, N.E. and Nielsen, L.K. (2009) Blood cell manufacture: current methods and future challenges. Trends in Biotechnology, 27 7: 415-422. doi:10.1016/j.tibtech.2009.03.008 66   36 Cited 34 times in Scopus34 0
Marcellin Saldana, Esteban Stefane, Mercer, Timothy, Licona Cassani, Cuauthemoc and Nielsen, Lars K. (2011). Building Systems biology platforms for Actinobacteria. In: ISBA XVI, Puerto Vallarta, Mexico, (). 11-15 December 2011. 36  
Dal'Molin, Cristiana Gomes de, Quek, Lake-Ee, Palfreyman, Robin William, Brumbley, Stevens Michael and Nielsen, Lars Keld (2010) C4GEM, a genome-scale metabolic model to study C4 plant metabolism. Plant Physiology, 154 4: 1871-1885. doi:10.1104/pp.110.166488 68   54 Cited 59 times in Scopus59 1
Dimont, Emmanuel, Hofmann, Oliver, Ho Sui, Shannan J., Forrest, Alistair R. R., Kawaji, Hideya, Hide, Winston, FANTOM Consortium, Beckhouse, Anthony, Wells, Christine, Vijayan, Dipti, Mason, Elizabeth, Wolvetang, Ernst, Hitchens, Kelly, Le Cao, Kim-Anh, Nielsen, Lars, Fearnley, Liam and Kenna, Tony (2014) CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments. Bioinformatics, 30 8: 1183-1184. doi:10.1093/bioinformatics/btu125 51   0 Cited 0 times in Scopus0 8
Nielsen, LK, Reid, S and Greenfield, PF (1997) Cell cycle model to describe animal cell size variation and lag between cell number and biomass dynamics. Biotechnology And Bioengineering, 56 4: 372-379. doi:10.1002/(SICI)1097-0290(19971120)56:4<372::AID-BIT3>3.0.CO;2-L 447   16 Cited 16 times in Scopus16 0
Collins, PC, Nielsen, LK, Patel, SD, Papoutsakis, ET and Miller, WM (1998) Characterization of hematopoietic cell expansion, oxygen uptake, and glycolysis in a controlled, stirred-tank bioreactor system. Biotechnology Progress, 14 3: 466-472. doi:10.1021/bp980032e 28   48 Cited 45 times in Scopus45 0
Petrasovits, Lars A., McQualter, Richard B., Gebbie, Leigh K., Blackman, Deborah M., Nielsen, Lars K. and Brumbley, Stevens M. (2013) Chemical inhibition of acetyl coenzyme A carboxylase as a strategy to increase polyhydroxybutyrate yields in transgenic sugarcane. Plant Biotechnology Journal, 11 9: 1146-1151. doi:10.1111/pbi.12109 50   2 Cited 1 times in Scopus1 0
Rye, Morten, Sandve, Geir Kjetil, Daub, Carsten O., Kawaji, Hideya, Carninci, Piero, Forrest, Alistair R. R., Drabløs, Finn, The FANTOM consortium, Beckhouse, Anthony, Fearnley, Liam, Hitchens, Kelly, Kenna, Tony, Le Cao, Kim-Anh, Mason, Elizabeth, Nielsen, Lars, Vijayan, Dipti, Wells, Christine and Wolvetang, Ernst (2014) Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. BMC Genomics, 15 120: 1-21. doi:10.1186/1471-2164-15-120 38   0 Cited 0 times in Scopus0 1
Timmins, N.E., Palfreyman, E., Marturana, F., Dietmair, S., Luikenga, S., Lopez, G., Fung, Y.L., Minchinton, R. and Nielsen, L.K. (2009) Clinical Scale Ex Vivo Manufacture of Neutrophils From Hematopoietic Progenitor Cells. Biotechnology and Bioengineering, 104 4: 832-840. doi:10.1002/bit.22433 86   10 Cited 10 times in Scopus10 0
Kawaji, Hideya, Lizio, Marina, Itoh, Masayoshi, Kanamori-Katayama, Mutsumi, Kaiho, Ai, Nishiyori-Sueki, Hiromi, Shin, Jay W., Kojima-Ishiyama, Miki, Kawano, Mitsuoki, Murata, Mitsuyoshi, Ninomiya-Fukuda, Noriko, Ishikawa-Kato, Sachi, Nagao-Sato, Sayaka, Noma, Shohei, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Carninci, Piero, The FANTOM Consortium, Beckhouse, Anthony, Fearnley, Liam, Hitchens, Kelly, Kenna, Tony, Le Cao, Kim-Anh, Mason, Elizabeth, Nielsen, Lars, Vijayan, Dipti, Wells, Christine and Wolvetang, Ernst (2014) Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing. Genome Research, 24 4: 708-718. doi:10.1101/gr.156232.113 43   2 Cited 3 times in Scopus3 23
Brunck, Marion E. G. and Nielsen, Lars K. (2014) Concise review: next-generation cell therapies to prevent infections in neutropenic patients. Stem Cells Translational Medicine, 3 4: 541-548. doi:10.5966/sctm.2013-0145 41 2 0 Cited 0 times in Scopus0 0
Liao, Chengheng, Rigali, Sebastien, Cassani, Cuauhtemoc Licona, Marcellin, Esteban, Nielsen, Lars Keld and Ye, Bang-Ce (2014) Control of chitin and N-acetylglucosamine utilization in Saccharopolyspora erythraea. Microbiology (United Kingdom), 160 9: 1914-1928. doi:10.1099/mic.0.078261-0 24   3 Cited 3 times in Scopus3 0
Quek, Lake-Ee and Nielsen, Lars K. (2014). Customization of 13C-MFA Strategy According to Cell Culture System. In Jens O. Kromer, Lars K. Nielsen and Lars M. Blank (Ed.), Metabolic Flux Analysis: Methods and Protocols (pp. 81-90) New York, NY United States: Humana Press. doi:10.1007/978-1-4939-1170-7_5 50   Cited 0 times in Scopus0 0
Huynh, Hoai T., Tran, Trinh T. B., Chan, Leslie C. L., Nielsen, Lars K. and Reid, Steven (2013) Decline in baculovirus-expressed recombinant protein production with increasing cell density is strongly correlated to impairment of virus replication and mRNA expression. Applied Microbiology and Biotechnology, 97 12: 5245-5257. doi:10.1007/s00253-013-4835-8 49   1 Cited 1 times in Scopus1 0
Etebari, Kayvan, Palfreyman, Robin W., Schlipalius, David, Nielsen, Lars K., Glatz, Richard V. and Asgari, Sassan (2011) Deep sequencing-based transcriptome analysis of Plutella xylostella larvae parasitized by Diadegma semiclausum. BMC Genomics, 12 446.1-446.18. doi:10.1186/1471-2164-12-446 75   30 Cited 30 times in Scopus30 0
Arifin, Yalun, Sabri, Suriana, Sugiarto, Haryadi, Krömer, Jens O., Vickers, Claudia E. and Nielsen, Lars K. (2011) Deletion of cscR in Escherichia coli W improves growth and poly-3-hydroxybutyrate (PHB) production from sucrose in fed batch culture. Journal of Biotechnology, 156 4: 275-278. doi:10.1016/j.jbiotec.2011.07.003 67   7 Cited 9 times in Scopus9 0
Kelm, J. M., Ehler, E., Nielsen, L. K., Schlatter, S., Perriard, J. C. and Fussenegger, M. (2004) Design of artificial myocardial microtissues. Tissue Engineering, 10 1-2: 201-214. doi:10.1089/107632704322791853 71   60 Cited 62 times in Scopus62 0
Marcellin, Esteban, Segovia, Simon, De Tissera, Sashini, Mitchell, Wayne, Kopke, Michael and Nielsen, Lars K. (2014). Developing an integrated systems and synthetic biology platform for gas fermentation. In: Metabolic Engineering X, Vancouver, BC, Canada, (). 15-19 June 2014. 27  
Brumbley, S. M., Petrasovits, L. A., McQualter, R. B., Zhou, L., Dal'Molin, C. and Nielsen, L. K. (2009). Developing sugarcane as a biofactory to produce plastics. In: Tropical Crops Biotechnology Conference 2009,, Kruger, South Africa, (). 21-25 July 2009. 63  
Brumbley, S. M., Purnell, M. P., Petrasovits, L. A., Nielsen, L. K. and Twine, P. H. (2007) Developing the sugarcane biofactory for high-value biomaterials. International Sugar Journal, 109 1297: 5-15. 434   14 Cited 16 times in Scopus16
Petrasovits, L. A., Zhao, L., McQualter, R. B., Snell, K. D., Nielsen, L. K. and Brumbley, S. M. (2008). Development of a pre-glasshouse selection system for PHB-producing sugarcane and establishment of a high throughput transformation system. In: International Symposium on Biological Polyesters Conference 2008, Auckland, NZ, (). 23-26 November 2008. 75  
Song, Hyohak, Kim, Tae Yong, Choi, Bo-Kyeong, Choi, Seong Jun, Nielsen, Lars K., Chang, Ho Nam and Lee, Sang Yup (2008) Development of chemically defined medium for Mannheimia succiniciproducens based on its genome sequence. Applied Microbiology and Biotechnology., 79 2: 263-272. doi:10.1007/s00253-008-1425-2 73   24 Cited 26 times in Scopus26 0

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