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Geard, N. L., Wiles, J. H., Hallinan, J. S., Tonkes, B. and Skellett, B. (2002). A comparison of neural landscapes: NK, NKp and NKq. In: D. Fogel and M. El-Sharkawi et al., Proceedings of the 2002 Congress on Evolutionary Computation. 2002 Congress on Evolutionary Computation, Hawaii, (205-210). 12-17 May, 2002. 73   6
RIKEN GER Group,, Wells, C. A., Frith, M., Ravasi, T., Pang, K. C., Hallinan, J. S., Mattick, J. S., Hume, D. A., Katayama, S., Tomaru, Y., Kasukawa, T., Waki, K., Nakanishi, M., Nakamura, M. and Nishida, H. (2005) Antisense transcription in the mammalian transcriptome. Science, 309 5740: 1564-1566. doi:10.1126/science.1112009 297   765 Cited 774 times in Scopus774 7
Hallinan, J. S. and Wiles, J. H. (2004). Asynchronous dynamics of an artificial genetic regulatory network. In: J. Pollack, M. Bedau, P. Husbands, T. Ikegami and R. Watson, Ninth International Conference on the Simulation and Synthesis of Living Systems. Artificial Life IX, Boston, MA, USA, (399-403). 12-15 September 2004. 52   2
Hallinan, Jennifer S. (2004). Cluster analysis of the p53 genetic regulatory network: topology and biology. In: G. Fogel, Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. IEEE 2004 Symposium on Computational Intelligence in Bioinforn, La Jolla, CA, USA, (1-8). 7-8 October 2004. doi:10.1109/CIBCB.2004.1393924 38   0
Hallinan, J. and Jackway, P. T. (1999). Co-operative evolution of a neural classifier and feature subset. In: B McKay, X Yao, CS Newton, J-H Kim and T Furuhashi, Second Asia-Pacific Conference on Simulated Evolution and Learning. SEAL'98, Canberra, (397-404). 24-27 November 1998. 26  
Hallinan, Jennifer Susan (2000). Detection of malignancy associated changes in cervical cells using statistical and evolutionary computation techniques PhD Thesis, Department of Computer Science and Electrical Engineering, University of Queensland. 205  
Hallinan, J. S., Bradley, D R, Mattick, J S and Wiles, J H (2006). Effects of an RNA control layer on the state space of boolean models of genetic regulatory networks. In: 2006 IEEE Congress on Evolutionary Computation. 2006 IEEE Congress on Evolutionary Computation, Vancouver, Canada, (2551-2555). 16-21 July, 2006. 60 3 Cited 0 times in Scopus0
Hallinan, J. S., Bradley, D R and Wiles, J H (2006). Effects of constitutive gene expression on the dynamics of random boolean networks. In: G.G Yen, 2006 IEEE Congress on Evolutionary Computation. 2006 IEEE Congress on Evolutionary Computation, Vancouver, Canada, (2355-2361). 16-21 July, 2006. 55   Cited 1 times in Scopus1
Wiles, J. H., Chenery, H. J., Hallinan, J., Blair, A. D. and Naumann, D. (2000). Effects of damage to the CDM Stroop Model. In: Davis, Van Gelder and and Wales, Proceedings of the Fifth Biennial Australasian Cognitive Science Conference. Fifth Biennial Australasian Cognitive Science Conference, Melbourne, (103-112). 30 Jan - 2 Feb, 2000. 44  
Hallinan, J. S. and Wiles, J. H. (2003). Evolutionary Algorithms. In Nadel and L (Ed.), Encyclopedia of Cognitive Science 1st ed. (pp. 40-47) London: Macmillan. 47  
Wiles, J. H. and Hallinan, J. S. (2003). Evolutionary computation and cognitive science. In D. B. Fogel and C. J. Robinson (Ed.), Computational Intelligence: The Experts Speak 1st ed. (pp. 179-189) San Diego, USA: IEEE Press. 58  
Hallinan, J. S. and Wiles, J. H. (2004). Evolving genetic regulatory networks using an artificial genome. In: Chen and Y-P, Conferences in Research and Practice in Information Technology. 2nd Asia-Pacific Bioinformatics Conference, Dunedin, New Zealand, (291-296). 18-22 January 2004. 43  
Hallinan, J. S. (2004) Game of Life in Scott, Alwyn (eds.) Encylopedia of Nonlinear Science. 1 New York, USA: Routledge 47  
Hallinan, J. S. (2004) Game Theory in Scott, Alwyn (eds.) Encyclopedia of Nonlinear Dynamics. 1 New York, USA: Routledge 47  
Hallinan, J. (2004) Gene duplication and hierarchical modularity in intracellular interaction networks. Biosystems, 74 1-3: 51-62. doi:10.1016/j.biosystems.2004.02.004 35   22 Cited 25 times in Scopus25 0
Wiles, J. H. and Hallinan, J. S. (2001) Guest editorial - evolutionary computation and cognitive science: modeling evolution and evolving models. IEEE Transaction on Evolutionary Computation, 5 2: 89-92. doi:10.1109/TEVC.2001.918428 72   0 0
Hallinan, J. and Wiles, J. H. (2000). Modeling the spread of antibiotic resistance. In: Congress on Evolutionary Computation 2000. Congress on Evolutionary Computation 2000, San Diego, USA, (1152-1159). 16-19 July, 2000. 37   1
Wiles, J. H., Schulz, R., Hallinan, J. S., Bolland, S. and Tonkes, B. (2001). Probing the persistent question marks. In: L. Spector, E. Goodman and A. Wu et al., Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-2001). Genetic and Evolutionary Computation Conference (GECCO-2001), San Francisco, (710-717). 7-11 July, 2001. 35  
Wiles, J. H., Schulz, R., Bolland, S., Tonkes, B. and Hallinan, J. S. (2001). Selection procedures for module discovery: Exploring evolutionary algorithms for cognitive science. In: J.D. Moore and K. Stenning, Proceedings of the Twenty-Third Annual Conference of the Cognitive Science Society. Twenty-Third Annual Conference of the Cognitive Science Society, Edinburgh, Scotland, (1124-1129). 1-4 August, 2001. 51  
Hallinan, J. S. (2003). Self-organization leads to hierarchical modularity in an internet community. In: V. Palade, R. J. Howlett and L. C. Jain, Lecture Notes in AI: 7th International Conference on Knowledge-Based Intelligent Information and Engineering Systems (KES'2003 ). KES'2003, University of Oxford, U.K., (914-917). 3-5 September 2003. 42  
Hallinan, J. and Jackway, P. T. (1999). Simultaneous evolution of feature subset and neural classifier on high-dimensional data. In: A Pearce and M Robey, Proceedings of the Fifth International/National Biennial Conference on Digital Image Computing, Techniques, and Applications. DICTA'99, Perth, (237-240). 7-8 December 1999. 31  
Wiles, Janet, Chenery, Helen J., Hallinan, Jennifer, Blair, Alan and Naumann, Daniel (2000) Stroop Performance in Alzheimer’s Disease: A Preliminary Test of Theories of Damage Using a Connectionist Simulation. Brain and Language, 74 3: 341-344. doi:10.1006/brln.2000.2359 63   0 0
Wiles, Janet, Geard, Nicholas L., Watson, James, Willadsen, Kai, Mattick, John, Bradley, Daniel and Hallinan, Jennifer (2005). There's more to a model than code: understanding and formalizing in silico modeling experience. In: Proceedings of the 2005 Workshops on Genetic and Evolutionary Computation. GECCO'05: The Genetic and Evolutionary Computation Conference 2005, Washington, DC, USA, (281-288). 25-29 June, 2005. doi:10.1145/1102256.1102318 9   0