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Whiley, David M. and Sloots, Theo P. (2005) A 5 '-nuclease real-time reverse transcriptase-polymerase chain reaction assay for the detection of a broad range of influenza A subtypes, including H5N1. Diagnostic Microbiology and Infectious Disease, 53 4: 335-337. doi:10.1016/j.diagmicrobio.2005.08.002 158   36 Cited 35 times in Scopus35 0
Chang, Anne B., Clark , Ronald, Sloots, Theo P., Stone, David G., Petsky, Helen L., Thearle, Donna, Champion, Anita A., Wheeler, Coralie and Acworth, Jason P. (2008) A 5- verus 3- day course of oral corticosteroids for children with asthma exacerbations who are not hospitalised: a randomized control trial. Medical Journal of Australia, 189 6: 306-310. 90   14 Cited 16 times in Scopus16
Syrmis, Melanie W., Kidd, Timothy J., Moser, Ralf J., Ramsay, Kay A., Gibson, Kristen M., Anuj, Snehal, Bell, Scott C., Wainwright, Claire E., Grimwood, Keith, Nissen, Michael, Sloots, Theo P. and Whiley, David M. (2014) A comparison of two informative SNP-based strategies for typing Pseudomonas aeruginosa isolates from patients with cystic fibrosis. BMC Infectious Diseases, 14 1: 307.1-307.8. doi:10.1186/1471-2334-14-307 44   0 Cited 0 times in Scopus0 3
Goire, Namraj, Nissen, Michael D., LeCornec, Genevera M., Sloots, Theo P. and Whiley, David, M. (2008) A duplex Neisseria gonorrhoeae real-time polymerase chain reaction assay targeting the gonoccoccal porA pseudogene and multicopy opa genes. Diagnostic Microbiology and Infectious Disease, 61 1: 6-12. doi:10.1016/j.diagmicrobio.2007.12.007 39   27 Cited 27 times in Scopus27 0
Whiley, David M., Jacobsson, Susanne, Tapsall, John W., Nissen, Michael D., Sloots, Theo P. and Unemo, Magnus (2010) Alterations of the pilQ gene in Neisseria gonorrhoeae are unlikely contributors to decreased susceptibility to ceftriaxone and cefixime in clinical gonococcal strains. Journal of Antimicrobial Chemotherapy, 65 12: 2543-2547. doi:10.1093/jac/dkq377 61   18 Cited 17 times in Scopus17 0
Bialasiewicz, Seweryn, Whiley, David M., Lambert, Stephen B., Wang, David, Nissen, Michael D. and Sloots, Theo P. (2007) A newly reported human polyomavirus, KI virus, is present in the respiratory tract of Australian children. Journal of Clinical Virology, 40 1: 15-18. doi:10.1016/j.jcv.2007.07.001 171   36 Cited 39 times in Scopus39 0
Goire, Namraj, Kattenbelt, Jacqueline A., Gould, Allan R., Nissen, Michael D., Sloots, Theo P. and Whiley, David (2009) An example of competitive inhibition in a monoplex real-time PCR as a cause of reduced fluorescent signal response. Pathology, 41 6: 607-609. doi:10.1080/00313020903071488 152   0 Cited 0 times in Scopus0 0
Chang, Anne B., Grimwood, Keith, Robertson, Colin F., Wilson, Andrew C., van Asperen, Peter P., O'Grady, Kerry-Ann F., Sloots, Theo P., Torzillo, Paul J., Bailey, Emily J., Mccallum, Gabrielle B., Masters, Ian B., Byrnes, Catherine .A, Buntain, Helen M., Morris, Peter S., Mackay, Ian M. and Chatfield, Mark D. (2012) Antibiotics for bronchiectasis exacerbations in children: Rationale and study protocol for a randomised placebo-controlled trial. Trials, 13 156: 156-1-156-9. doi:10.1186/1745-6215-13-156 99   3 Cited 4 times in Scopus4 1
Whiley, David M., LeCornec, Genevera M., Mackay, Ian M., Siebert, David J. and Sloots, Theo P. (2002) A real-time PCR assay for the detection of Neisseria gonorrhoeae by LightCycler. Diagnostic Microbiology And Infectious Disease, 42 2: 85-89. doi:10.1016/S0732-8893(01)00326-1 134   22 Cited 24 times in Scopus24 0
Whiley, David M., Buda, Philip P., Freeman, Kevin, Prattle, Neville I., Bates, John and Sloots, Theo P. (2005) A real-time PCR assay for the detection of Neisseria gonorrhoeae in genital and extragenital specimens. Diagnostic Microbiology and Infectious Disease, 52 1: 1-5. doi:10.1016/j.diagmicrobio.2004.12.011 75   20 Cited 25 times in Scopus25 0
Rockett, Rebecca J., Tozer, Sarah J., Peatey, Chris, Bialasiewicz, Seweryn, Whiley, David M., Nissen, Michael D., Trenholme, Katharine, Mc Carthy, James S. and Sloots, Theo P. (2011) A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers. Malaria Journal, 10 48: 48-1-48-6. doi:10.1186/1475-2875-10-48 135   8 Cited 10 times in Scopus10 0
Syrmis, Melanie W., Whiley, David M., Thomas, Marion, Mackay, Ian M., Williamson, Jeanette, Siebert, David J., Nissen, Michael D. and Sloots, Theo P. (2004) A sensitive, specific, and cost-effective multiplex reverse transcriptase-PCR assay for the detection of seven common respiratory viruses in respiratory samples. Journal of Molecular Diagnostics, 6 2: 125-131. doi:10.1016/S1525-1578(10)60500-4 114   113 Cited 128 times in Scopus128 0
Whiley, David M., Faux, Cassandra E., Bialasiewicz, Seweryn, Gould, Allan R., Lambert, Stephen B., Nissen, Michael D. and Sloots, Theo P. (2010) A simple approach for preparing real-time PCR positive reaction controls for rare or emerging viruses. Journal of Clinical Virology, 48 3: 193-197. doi:10.1016/j.jcv.2010.03.022 74   6 Cited 5 times in Scopus5 0
Cox, Hannah C., Jacob, Kevin, Whiley, David M., Bletchly, Cheryl, Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2013) Bordetella holmesii and pertussis diagnosis: authors' reply. Pathology, 45 5: 532-532. doi:10.1097/PAT.0b013e3283639c0d 33   0 Cited 0 times in Scopus0 1
Chang, Anne B., Grimwood, Keith, Wilson, Andrew C., van Asperen, Peter P., Byrnes, Catherine A., O'Grady, Kerry-Ann F., Sloots, Theo P., Robertson, Colin F., Torzillo, Paul J., McCallum, Gabrielle B., Masters, Ian B., Buntain, Helen M., Mackay, Ian M., Ungerer, Jacobus, Tuppin, Joanne and Morris, Peter S. (2013) Bronchiectasis exacerbation study on azithromycin and amoxycillin-clavulanate for respiratory exacerbations in children (BEST-2): study protocol for a randomized controlled trial. Trials, 14 1-10. doi:10.1186/1745-6215-14-53 68   3 Cited 3 times in Scopus3 1
Mackay, Ian M., Arden, Katherine E., Speicher, David J., O'Neil, Nicholas T., McErlean, Peter K., Greer, Ristan M., Nissen, Michael D. and Sloots, Theo P. (2012) Co-circulation of four human Coronaviruses (HCoVs) in Queensland children with acute respiratory tract illnesses in 2004. Viruses, 4 4: 637-653. doi:10.3390/v4040637 87 1 7 Cited 7 times in Scopus7 0
Mackay, Ian M., Gardam, Tim, Arden, Katherine E., McHardy, Suzi, Whiley, David M., Crisante, Erin and Sloots, Theo P. (2003) Co-detection and discrimination of six human herpesviruses by multiplex PCR-ELAHA. Journal of Clinical Virology, 28 3: 291-302. doi:10.1016/S1386-6532(03)00072-6 124   9 Cited 6 times in Scopus6 0
Lambert, Stephen B., Allen, Kelly M., Druce, Julian D., Birch, Chris J., Mackay, Ian M., Carlin, John B., Carapetis, Jonathan R., Sloots, Theo P., Nissen, Michael D. and Nolan, Terence M. (2007) Community epidemiology of human Metapneumovirus, human Coronavirus NL63, and other respiratory viruses in healthy preshcool-aged children using parent-collected specimens. Pediatrics, 120 4: e929-e937. doi:10.1542/peds.2006-3703 112   45 Cited 51 times in Scopus51 0
Mackay, Ian M., Lambert, Stephen B., Faux, Cassandra E., Arden, Katherine E., Nissen, Michael D., Sloots, Theo P. and Nolan, Terence M. (2013) Community-wide, contemporaneous circulation of a broad spectrum of human rhinoviruses in healthy Australian preschool-aged children during a 12-month period. Journal of Infectious Diseases, 207 9: 1433-1441. doi:10.1093/infdis/jis476 33   6 Cited 9 times in Scopus9 1
Lambert, Stephen B., Whiley, David M., O'Neill, Nicholas T., Andrews, Emily C., Canavan, Fiona M., Bletchly, Cheryl, Siebert, David J., Sloots, Theo P. and Nissen, Michael D. (2008) Comparing nose-throat swabs and nasopharyngeal aspirates collected from children with symptoms for respiratory virus identification using real-time polymerase chain reaction. Pediatrics, 122 3: e615-e620. doi:10.1542/peds.2008-0691 93   54 Cited 59 times in Scopus59 0
Whiley, David M. and Sloots, Theo P. (2005) Comparison of three in-house multiplex PCR assays for the detection of Neisseria gonorrhoeae and Chlamydia trachomatis using real-time and conventional detection methodologies. Pathology, 37 5: 364-370. doi:10.1080/00313020500254552 206   17 Cited 19 times in Scopus19 0
Whiley, David M., Mackay, Ian M., Syrmis, Melanie W., Witt, Michael J. and Sloots, Theo P. (2004) Detection and differentiation of herpes simplex virus types 1 and 2 by a duplex LightCycler PCR that incorporates an internal control PCR reaction. Journal of Clinical Virology, 30 1: 32-38. doi:10.1016/j.jcv.2003.08.003 127   19 Cited 24 times in Scopus24 0
Whiley, David M., Mackay, Ian M. and Sloots, Theo P. (2001) Detection and differentiation of human polyomaviruses JC and BK by LightCycler PCR. Journal of Clinical Microbiology, 39 12: 4357-4361. doi:10.1128/JCM.39.12.4357-4361.2001 85   60 Cited 73 times in Scopus73 0
Whiley, David M., LeCornec, Genevera M., Baddeley, Annette, Savill, John, Syrmis, Melanie W., Mackay, Ian M., Siebert, David J., Burns, Dominic, Nissen, Michael and Sloots, Theo P. (2004) Detection and differentiation of Plasmodium species by polymerase chain reaction and colorimetric detection in blood samples of patients with suspected malaria. Diagnostic Microbiology And Infectious Disease, 49 1: 25-29. doi:10.1016/j.diagmicrobio.2003.10.014 75   12 Cited 12 times in Scopus12 0
Mackay, Ian M., Harnett, Gerry, Jeoffreys, Neisha, Bastian, Ivan, Sriprakash, Kadaba S., Siebert, David and Sloots, Theo P. (2006) Detection and discrimination of herpes simplex viruses, Haemophilus ducreyi, Treponema pallidum, and Calymmatobacterium (Klebsiella) granulomatis from genital ulcers. Clinical Infectious Diseases, 42 10: 1431-1438. doi:10.1086/503424 178   21 Cited 32 times in Scopus32 1
Bialasiewicz, Seweryn, McVernon, Jodie, Nolan, Terry, Lambert, Stephen B., Zhao, Guoyan, Wang, David, Nissen, Michael D. and Sloots, Theo P. (2014) Detection of a divergent Parainfluenza 4 virus in an adult patient with influenza like illness using next-generation sequencing. BMC Infectious Diseases, 14 1: 275.1-275.5. doi:10.1186/1471-2334-14-275 22   0 Cited 0 times in Scopus0 1
Bialasiewicz, Seweryn, Whiley, David M., Lambert, Stephen B., Nissen, Michael D. and Sloots, Theo P. (2009) Detection of BK, JC, WU, or KI polyomaviruses in faecal, urine, blood, cerebrospinal fluid and respiratory samples. Journal of Clinical Virology, 45 3: 249-254. doi:10.1016/j.jcv.2009.05.002 79   44 Cited 45 times in Scopus45 0
Tozer, Sarah J., Lambert, Stephen B., Whiley, David M., Bialasiewicz, Seweryn, Lyon, Michael J, Nissen, Michael D. and Sloots, Theo P. (2009) Detection of Human Bocavirus in respiratory, fecal and blood samples by real-time PCR. Journal of Medical Virology, 81 3: 488-493. doi:10.1002/jmv.21409 52   37 Cited 40 times in Scopus40 0
Whiley, David M., Syrmis, Melanie W., Mackay, Ian M. and Sloots, Theo P. (2002) Detection of human respiratory syncytial virus in respiratory samples by LightCycler reverse transcriptase PCR. Journal of Clinical Microbiology, 40 12: 4418-4422. doi:10.1128/JCM.40.12.4418-4422.2002 96   30 Cited 33 times in Scopus33 0
Whiley, David M., Crisante, Michelle E., Syrmis, Melanie W., Mackay, Ian M. and Sloots, Theo P. (2003) Detection of Neisseria meningitidis by LightCycler PCR. Pathology, 35 4: 347-349. doi:10.1080/0031302031000152874 62   3 Cited 3 times in Scopus3 0
Whiley, David M ., Crisante, Michelle E., Syrmis, Melanie W., Mackay, Ian M. and Sloots, Theo P. (2003) Detection of Neisseria Meningitidis in clinical samples by a duplex read-time PCR targeting the porA and ctrA Genes. Molecular Diagnosis, 7 3: 141-145. 60   Cited 12 times in Scopus12
Whiley, David M., Bialasiewicz, Seweryn, Bletchly, Cheryl, Faux, Cassandra E., Harrower, Bruce, Gould, Allan R., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2009) Detection of novel influenza A(H1N1) virus by real-time RT-PCR.. Journal of Clinical Virology, 45 3: 203-204. doi:10.1016/j.jcv.2009.05.032 74   58 Cited 68 times in Scopus68 0
Rockett, Rebecca J., Sloots, Theo P., Bowes, Sharleen, O'Neill, Nicholas, Ye, Suifang, Robson, Jenny, Whiley, David M., Lambert, Stephen B., Wang, David, Nissen, Michael D. and Bialasiewicz, Seweryn (2013) Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid. PLoS ONE, 8 5: e62764.1-e62764.9. doi:10.1371/journal.pone.0062764 33   6 Cited 6 times in Scopus6 0
van der Meijden, Els, Bialasiewicz, Seweryn, Rockett, Rebecca J., Tozer, Sarah J., Sloots, Theo P. and Feltkamp, Mariet C. W. (2013) Different serologic behavior of MCPyV, TSPyV, HPyV6, HPyV7 and HPyV9 polyomaviruses found on the skin. PLoS One, 8 11: e81078.1-e81078.9. doi:10.1371/journal.pone.0081078 29   8 Cited 11 times in Scopus11 2
Rahimi, Frashta, Goire, Namraj, Guy, Rebecca, Kaldor, John M., Ward, James, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2013) Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?. Sexual Health, 10 4: 299-304. doi:10.1071/SH12108 29   0 Cited 0 times in Scopus0 3
McErlean, Peter, Shackelton, Laura A., Andrews, Emily, Webster, Dale R., Lambert, Stephen B., Nissen, Michael D., Sloots, Theo P. and Mackay, Ian M. (2008) Distinguishing molecular features and clinical characteristics of a putative new rhinovirus species, Human Rhinovirus C (HRV C). PLoS one, 3 4: e1847-e1847. doi:10.1371/journal.pone.0001847 84   85 Cited 92 times in Scopus92 0
Whiley, David M., Limnios, E. Athena, Ray, Sanghamitra, Sloots, Theo P. and Tapsall, John W. (2007) Diversity of penA alterations and subtypes in Neisseria gonorrhoeae strains from Sydney, Australia, that are less susceptible to ceftriaxone. Antimicrobial Agents And Chemotherapy, 51 9: 3111-3116. doi:10.1128/AAC.00306-07 50   65 Cited 67 times in Scopus67 0
Lambert, Stephen B., Faux, Cassandra E., Hall, L, Birrell, FA, Peterson, KV, Selvey, CE, Sloots, Theo P., Nissen, Michael D. and Grimwood, K (2009) Early evidence for direct and indirect effects of the infant rotavirus vaccine program in Queensland. Medical Journal of Australia, 191 3: 157-160. 81   56 Cited 71 times in Scopus71
Goire, Namraj, Ohnishi, Makoto, Limnios, Athena E., Lahra, Monica M., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2012) Enhanced gonococcal antimicrobial surveillance in the era of ceftriaxone resistance: A real-time PCR assay for direct detection of the Neisseria gonorrhoeae H041 strain. Journal of Antimicrobial Chemotherapy, 67 4: 902-905. doi:10.1093/jac/dkr549 64   9 Cited 11 times in Scopus11 1
Goire, Namraj, Freeman, Kevin, Tapsall, John W., Lambert, Stephen B., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2011) Enhancing gonococcal antimicrobial resistance surveillance: a real-time PCR assay for detection of penicillinase-producing Neisseria gonorrhoeae by use of noncultured clinical samples. Journal of clinical microbiology, 49 2: 513-518. doi:10.1128/JCM.02024-10 101   12 Cited 13 times in Scopus13 0
Whiley, David M., Mackay, Ian M., Nimmo, Graeme R., Sloots, Theo P. and Nissen, Michael D. (2014) Enhancing influenza diagnostics to catch a shifting target. Lancet Infectious Diseases, 14 10: 923-923. doi:10.1016/S1473-3099(14)70916-8 12   0 Cited 0 times in Scopus0 3
Dierig, Alexa, Heron, Leon G., Lambert, Stephen B., Yin, Jiehui Kevin, Leask, Julie, Chow, Maria Yui Kwan, Sloots, Theo P., Nissen, Michael D., Ridda, Iman and Booy, Robert (2014) Epidemiology of respiratory viral infections in children enrolled in a study of influenza vaccine effectiveness. Influenza and other Respiratory Viruses, 8 3: 293-301. doi:10.1111/irv.12229 17   1 Cited 1 times in Scopus1 15
MacGinley, Robert, Bartley, Paul B., Sloots, Theo P. and Johnson, David W. (2001) Epstein-Barr virus encephalitis in a renal allograft recipient diagnosed by polymerase chain reaction on cerebrospinal fluid and successfully treated with ganciclovir. Nephrology Dialysis Transplantation, 16 1: 197-198. doi:10.1093/ndt/16.1.197 77   6 0
Lambert, Stephen B., Faux, Cassandra E., Hall, Lisa, Birrell, Frances A., Peterson, Karen V, Selvey, Christine E., Sloots, Theo P., Nissen, Michael D and Grimwood, Keith (2010) Errantum : Early evidence for direct and indirect effects of the infant rotavirus vaccine program in Queensland (vol 191, pg 157, 2009). Medical Journal of Australia, 192 9: 525-525. 38   0 Cited 0 times in Scopus0
Rockett, Rebecca, Goire, Namraj, Limnios, Athena, Turra, Mark, Higgens, Geoffrey, Lambert, Stephen B., Bletchly, Cheryl, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2010) Evaluation of the cobas 4800 CT/NG test for detecting Chlamydia trachomatis and Neisseria gonorrhoeae. Sexually Transmitted Infections, 86 6: 470-473. doi:10.1136/sti.2010.042812 59   22 Cited 21 times in Scopus21 0
Sloots, Theo P., McErlean, Peter, Speicher, David J., Arden, Katherine E., Nissen, Michael D. and Mackay, Ian M. (2006) Evidence of human coronavirus HKU1 and human bocavirus in Australian children. Journal of Clinical Virology, 35 1: 99-102. doi:10.1016/j.jcv.2005.09.008 87   226 Cited 255 times in Scopus255 4
Nissen, Michael D., Siebert, David J., Mackay, Ian M., Sloots, Theo P. and Withers, Stephen J. (2002) Evidence of human metapneumovirus in Australian children. Medical Journal of Australia, 176 4: 188-188. 55   138
Whiley, David M., Anderson, Trevor P., Barratt, Kevin, Beaman, Miles H., Buda, Philip J., Carter, Martine, Freeman, Kevin, Hallsworth, Peter, Limnios, E. Athena, Lum, Gary, Merien, Fabrice, Vernel-Pauillac, Frédérique, Tapsall, John W., Witt, Michael J., Nissen, Michael D. and Sloots, Theo P. (2006) Evidence that the gonococcal porA pseudogene is present in a broad range of Neisseria gonorrhoeae strains; suitability as a diagnostic target. Pathology, 38 5: 445-448. doi:10.1080/00313020600928253 134   16 Cited 17 times in Scopus17 0
Whiley, David M., Garland, Suzanne M., Harnett, Geoffrey, Lum, Gary, Smith, David W., Tabrizi, Sepehr N., Sloots, Theo P. and Tapsall, John W. (2008) Exploring 'best practice' for nucleic acid detection of Neisseria gonorrhoeae. Sexual Health, 5 1: 17-23. doi:10.1071/SH07050 49   28 Cited 34 times in Scopus34 0
Antonsson, Annika, Bialasiewicz, Seweryn, Rockett, Rebecca J., Jacob, Kevin, Bennett, Ian C. and Sloots, Theo P. (2012) Exploring the Prevalence of Ten Polyomaviruses and Two Herpes Viruses in Breast Cancer. Plos One, 7 8: e39842-1-e39842-4. doi:10.1371/journal.pone.0039842 35   7 Cited 11 times in Scopus11 1

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