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Yagi, Kasumi, Satou, Yutaka, Mazet, Francoise, Shimeld, Sebastian M., Degnan, Bernard, Rokhsar, Daniel, Levine, Michael, Kohara, Yuji and Satoh, Nori (2003) A genomewide survey of developmental genes in Ciona intestinalis: III. Genes for Fox, ETS, nuclear receptors and NF- kB. Development Genes and Evolution, 213 5-6: 235-244. doi:10.1007/s00427-003-0322-z 97   92 Cited 97 times in Scopus97 0
Tyson, Gene W., Chapman, Jarrod, Hugenholtz, Philip, Allen, Eric E., Ram, Rachna J., Richardson, Paul M., Solovyev, Victor V., Rubin, Edward M., Rokhsar, Daniel S. and Banfield, Jillian F. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature, 428 6978: 37-43. doi:10.1038/nature02340 95   962 Cited 1020 times in Scopus1020 14
Srivastava, Mansi, Larroux, Claire, Lu, Daniel R., Mohanty, Kareshma, Chapman, Jarrod, Degnan, Bernard M. and Rokhsar, Daniel S. (2010) Early evolution of the LIM homeobox gene family. BMC Biology, 8 1-12. doi:10.1186/1741-7007-8-4 61   30 Cited 27 times in Scopus27 0
Taft, Ryan, Simons, Cas, Nahkuri, Satu, Oey, Harald, Korbie, Darren J., Mercer, Timothy R., Holst, Jeff, Ritchie, William, Wong, Justin J-L., Rasko, John E. J., Rokhsar, Daniel S., Degnan, Bernard M. and Mattick, John S. (2010) Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nature Structural and Molecular Biology, 17 8: 1030-1035. doi:10.1038/nsmb.1841 114   77 Cited 84 times in Scopus84 0
Jackson, Daniel J., McDougall, Carmel, Woodcroft, Ben, Moase, Patrick, Rose, Robert A., Kube, Michael, Reinhardt, Richard, Rokhsar, Daniel S., Montagnani, Caroline, Joubert, Caroline, Piquemal, David and Degnan, Bernard M. (2010) Parallel evolution of nacre building gene sets in molluscs. Molecular Biology and Evolution, 27 3: 591-608. doi:10.1093/molbev/msp278 94   74 Cited 77 times in Scopus77 3
Srivastava, Mansi, Simakov, Oleg, Chapman, Jarrod, Fahey, Bryony, Gauthier, Marie E. A., Mitros, Therese, Richards, Gemma S., Conaco, Cecilia, Dacre, Michael, Hellsten, Uffe, Larroux, Claire, Putnam, Nicholas H., Stanke, Mario, Adamska, Maja, Darling, Aaron, Degnan, Sandie M., Oakley, Todd H., Plachetzki, David C., Zhai, Yufeng F., Adamski, Marcin, Calcino, Andrew, Cummins, Scott F., Goodstein, David M., Harris, Christina, Jackson, Daniel J., Leys, Sally P., Shu, Shengqiang Q., Woodcroft, Ben J., Vervoort, Michel, Kosik, Kenneth S., Manning, Gerard, Degnan, Bernard M. and Rokhsar, Daniel S. (2010) The Amphimedon queenslandica genome and the evolution of animal complexity. Nature, 466 7307: 720-726. doi:10.1038/nature09201 168   324 Cited 323 times in Scopus323 61
Dehal, Paramvir, Satou, Yutaka, Campbell, Robert K., Chapman, Jarrod, Degnan, Bernard, De Tomaso, Anthony, Davidson, Brad, Gregorio, Anna Di, Gelpke, Maarten, Goodstein, David M., Harafuji, Naoe, Hastings, Kenneth E. M., Ho, Isaac, Hotta, Kohji, Huang, Wayne, Kawashima, Takeshi, Lemaire, Patrick, Martinez, Diego, Meinertzhagen, Ian A., Necula, Simona, Nonaka, Masaru, Putnam, Nik, Rash, Sam, Saiga, Hidetoshi, Satake, Masanobu, Terry, Astrid, Yamada, Lixy, Wang, Hong-Gang, Awazu, Satoko, Azumi, Kaoru, Boore, Jeffrey, Branno, Margherita, Chin-bow, Stephen, DeSantis, Rosaria, Doyle, Sharon, Francino, Pilar, Keys, David N., Haga, Shinobu, Hayashi, Hiroko, Hino, Kyosuke, Imai, Kaoru S., Inaba, Kazuo, Kano, Shungo, Kobayashi, Kenji, Kobayashi, Mari, Lee, Byung-In, Makabe, Kazuhiro W., Manohar, Chitra, Matassi, Giorgio, Medina, Monica, Mochizuki, Yasuaki, Mount, Steve, Morishita, Tomomi, Miura, Sachiko, Nakayama, Akie, Nishizaka, Satoko, Nomoto, Hisayo, Ohta, Fumiko, Rigoutsos, Isidore, Sano, Masako, Akane, Sasaki, Sasakura, Yasunori, Shoguchi, Eiichi, Shin-i, Tadasu, Spagnuolo, Antoinetta, Stainier, Didier, Suzuki, Miho M., Tassy, Olivier, Takatori, Naohito, Tokuoka, Miki, Yagi, Kasumi, Yoshizaki, Fumiko, Wada, Shuichi, Zhang, Cindy, Hyatt, P. Douglas, Larimer, Frank, Detter, Chris, Doggett, Norman, Glavina, Tijana, Hawkins, Trevor, Richardson, Paul, Lucas, Susan, Kohara, Yuji, Levine, Michael, Satoh, Nori and Rokhsar, Daniel S. (2002) The draft genome sequence of the ascidian Ciona intestinalis: insights into the evolutionary origins of chordates and vertebrates. Science, 298 5601: 2157-2167. doi:10.1126/science.1080049 263   1026 Cited 989 times in Scopus989 11
Banks, Jo Ann, Nishiyama, Tomoaki, Hasebe, Mitsuyasu, Bowman, John L., Gribskov, Michael, dePamphilis, Claude, Albert, Victor A., Aono, Naoki, Aoyama, Tsuyoshi, Ambrose, Barbara A., Ashton, Neil W., Axtell, Michael J., Barker, Elizabeth, Barker, Michael S., Bennetzen, Jeffrey L., Bonawitz, Nicholas D., Chapple, Clint, Cheng, Chaoyang, Correa, Luiz Gustavo Guedes, Dacre, Michael, DeBarry, Jeremy, Dreyer, Ingo, Elias, Marek, Engstrom, Eric M., Estelle, Mark, Feng, Liang, Finet, Cedric, Floyd, Sandra K., Frommer, Wolf B., Fujita, Tomomichi, Gramzow, Lydia, Gutensohn, Michael, Harholt, Jesper, Hattori, Mitsuru, Heyl, Alexander, Hirai, Tadayoshi, Hiwatashi, Yuji, Ishikawa, Masaki, Iwata, Mineko, Karol, Kenneth G., Koehler, Barbara, Kolukisaoglu, Uener, Kubo, Minoru, Kurata, Tetsuya, Lalonde, Sylvie, Li, Kejie, Li, Ying, Litt, Amy, Lyons, Eric, Manning, Gerard, Maruyama, Takeshi, Michael, Todd P., Mikami, Koji, Miyazaki, Saori, Morinaga, Shin-ichi, Murata, Takashi, Mueller-Roeber, Bernd, Nelson, David R., Obara, Mari, Oguri, Yasuko, Olmstead, Richard G., Onodera, Naoko, Petersen, Bent Larsen, Pils, Birgit, Prigge, Michael, Rensing, Stefan A., Mauricio Riano-Pachon, Diego, Roberts, Alison W., Sato, Yoshikatsu, Scheller, Henrik Vibe, Schulz, Burkhard, Schulz, Christian, Shakirov, Eugene V., Shibagaki, Nakako, Shinohara, Naoki, Shippen, Dorothy E., Sorensen, Iben, Sotooka, Ryo, Sugimoto, Nagisa, Sugita, Mamoru, Sumikawa, Naomi, Tanurdzic, Milos, Theissen, Guenter, Ulvskov, Peter, Wakazuki, Sachiko, Weng, Jing-Ke, Willats, William W. G. T., Wipf, Daniel, Wolf, Paul G., Yang, Lixing, Zimmer, Andreas D., Zhu, Qihui, Mitros, Therese, Hellsten, Uffe, Loque, Dominique, Otillar, Robert, Salamov, Asaf, Schmutz, Jeremy, Shapiro, Harris, Lindquist, Erika, Lucas, Susan, Rokhsar, Daniel and Grigoriev, Igor V. (2011) The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science, 332 6032: 960-963. doi:10.1126/science.1203810 96   185 Cited 186 times in Scopus186 5