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Yagi, Kasumi, Satou, Yutaka, Mazet, Francoise, Shimeld, Sebastian M., Degnan, Bernard, Rokhsar, Daniel, Levine, Michael, Kohara, Yuji and Satoh, Nori (2003) A genomewide survey of developmental genes in Ciona intestinalis: III. Genes for Fox, ETS, nuclear receptors and NF- kB. Development Genes and Evolution, 213 5-6: 235-244. doi:10.1007/s00427-003-0322-z 92   91 Cited 96 times in Scopus96 0
Tyson, Gene W., Chapman, Jarrod, Hugenholtz, Philip, Allen, Eric E., Ram, Rachna J., Richardson, Paul M., Solovyev, Victor V., Rubin, Edward M., Rokhsar, Daniel S. and Banfield, Jillian F. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature, 428 6978: 37-43. doi:10.1038/nature02340 90   935 Cited 993 times in Scopus993 10
Srivastava, Mansi, Larroux, Claire, Lu, Daniel R., Mohanty, Kareshma, Chapman, Jarrod, Degnan, Bernard M. and Rokhsar, Daniel S. (2010) Early evolution of the LIM homeobox gene family. BMC Biology, 8 1-12. doi:10.1186/1741-7007-8-4 54   25 Cited 22 times in Scopus22 0
Taft, Ryan, Simons, Cas, Nahkuri, Satu, Oey, Harald, Korbie, Darren J., Mercer, Timothy R., Holst, Jeff, Ritchie, William, Wong, Justin J-L., Rasko, John E. J., Rokhsar, Daniel S., Degnan, Bernard M. and Mattick, John S. (2010) Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nature Structural and Molecular Biology, 17 8: 1030-1035. doi:10.1038/nsmb.1841 106   75 Cited 81 times in Scopus81 0
Jackson, Daniel J., McDougall, Carmel, Woodcroft, Ben, Moase, Patrick, Rose, Robert A., Kube, Michael, Reinhardt, Richard, Rokhsar, Daniel S., Montagnani, Caroline, Joubert, Caroline, Piquemal, David and Degnan, Bernard M. (2010) Parallel evolution of nacre building gene sets in molluscs. Molecular Biology and Evolution, 27 3: 591-608. doi:10.1093/molbev/msp278 89   70 Cited 72 times in Scopus72 0
Srivastava, Mansi, Simakov, Oleg, Chapman, Jarrod, Fahey, Bryony, Gauthier, Marie E. A., Mitros, Therese, Richards, Gemma S., Conaco, Cecilia, Dacre, Michael, Hellsten, Uffe, Larroux, Claire, Putnam, Nicholas H., Stanke, Mario, Adamska, Maja, Darling, Aaron, Degnan, Sandie M., Oakley, Todd H., Plachetzki, David C., Zhai, Yufeng F., Adamski, Marcin, Calcino, Andrew, Cummins, Scott F., Goodstein, David M., Harris, Christina, Jackson, Daniel J., Leys, Sally P., Shu, Shengqiang Q., Woodcroft, Ben J., Vervoort, Michel, Kosik, Kenneth S., Manning, Gerard, Degnan, Bernard M. and Rokhsar, Daniel S. (2010) The Amphimedon queenslandica genome and the evolution of animal complexity. Nature, 466 7307: 720-726. doi:10.1038/nature09201 151   285 Cited 285 times in Scopus285 58
Dehal, Paramvir, Satou, Yutaka, Campbell, Robert K., Chapman, Jarrod, Degnan, Bernard, De Tomaso, Anthony, Davidson, Brad, Gregorio, Anna Di, Gelpke, Maarten, Goodstein, David M., Harafuji, Naoe, Hastings, Kenneth E. M., Ho, Isaac, Hotta, Kohji, Huang, Wayne, Kawashima, Takeshi, Lemaire, Patrick, Martinez, Diego, Meinertzhagen, Ian A., Necula, Simona, Nonaka, Masaru, Putnam, Nik, Rash, Sam, Saiga, Hidetoshi, Satake, Masanobu, Terry, Astrid, Yamada, Lixy, Wang, Hong-Gang, Awazu, Satoko, Azumi, Kaoru, Boore, Jeffrey, Branno, Margherita, Chin-bow, Stephen, DeSantis, Rosaria, Doyle, Sharon, Francino, Pilar, Keys, David N., Haga, Shinobu, Hayashi, Hiroko, Hino, Kyosuke, Imai, Kaoru S., Inaba, Kazuo, Kano, Shungo, Kobayashi, Kenji, Kobayashi, Mari, Lee, Byung-In, Makabe, Kazuhiro W., Manohar, Chitra, Matassi, Giorgio, Medina, Monica, Mochizuki, Yasuaki, Mount, Steve, Morishita, Tomomi, Miura, Sachiko, Nakayama, Akie, Nishizaka, Satoko, Nomoto, Hisayo, Ohta, Fumiko, Rigoutsos, Isidore, Sano, Masako, Akane, Sasaki, Sasakura, Yasunori, Shoguchi, Eiichi, Shin-i, Tadasu, Spagnuolo, Antoinetta, Stainier, Didier, Suzuki, Miho M., Tassy, Olivier, Takatori, Naohito, Tokuoka, Miki, Yagi, Kasumi, Yoshizaki, Fumiko, Wada, Shuichi, Zhang, Cindy, Hyatt, P. Douglas, Larimer, Frank, Detter, Chris, Doggett, Norman, Glavina, Tijana, Hawkins, Trevor, Richardson, Paul, Lucas, Susan, Kohara, Yuji, Levine, Michael, Satoh, Nori and Rokhsar, Daniel S. (2002) The draft genome sequence of the ascidian Ciona intestinalis: insights into the evolutionary origins of chordates and vertebrates. Science, 298 5601: 2157-2167. doi:10.1126/science.1080049 244   1000 Cited 966 times in Scopus966 8
Banks, Jo Ann, Nishiyama, Tomoaki, Hasebe, Mitsuyasu, Bowman, John L., Gribskov, Michael, dePamphilis, Claude, Albert, Victor A., Aono, Naoki, Aoyama, Tsuyoshi, Ambrose, Barbara A., Ashton, Neil W., Axtell, Michael J., Barker, Elizabeth, Barker, Michael S., Bennetzen, Jeffrey L., Bonawitz, Nicholas D., Chapple, Clint, Cheng, Chaoyang, Correa, Luiz Gustavo Guedes, Dacre, Michael, DeBarry, Jeremy, Dreyer, Ingo, Elias, Marek, Engstrom, Eric M., Estelle, Mark, Feng, Liang, Finet, Cedric, Floyd, Sandra K., Frommer, Wolf B., Fujita, Tomomichi, Gramzow, Lydia, Gutensohn, Michael, Harholt, Jesper, Hattori, Mitsuru, Heyl, Alexander, Hirai, Tadayoshi, Hiwatashi, Yuji, Ishikawa, Masaki, Iwata, Mineko, Karol, Kenneth G., Koehler, Barbara, Kolukisaoglu, Uener, Kubo, Minoru, Kurata, Tetsuya, Lalonde, Sylvie, Li, Kejie, Li, Ying, Litt, Amy, Lyons, Eric, Manning, Gerard, Maruyama, Takeshi, Michael, Todd P., Mikami, Koji, Miyazaki, Saori, Morinaga, Shin-ichi, Murata, Takashi, Mueller-Roeber, Bernd, Nelson, David R., Obara, Mari, Oguri, Yasuko, Olmstead, Richard G., Onodera, Naoko, Petersen, Bent Larsen, Pils, Birgit, Prigge, Michael, Rensing, Stefan A., Mauricio Riano-Pachon, Diego, Roberts, Alison W., Sato, Yoshikatsu, Scheller, Henrik Vibe, Schulz, Burkhard, Schulz, Christian, Shakirov, Eugene V., Shibagaki, Nakako, Shinohara, Naoki, Shippen, Dorothy E., Sorensen, Iben, Sotooka, Ryo, Sugimoto, Nagisa, Sugita, Mamoru, Sumikawa, Naomi, Tanurdzic, Milos, Theissen, Guenter, Ulvskov, Peter, Wakazuki, Sachiko, Weng, Jing-Ke, Willats, William W. G. T., Wipf, Daniel, Wolf, Paul G., Yang, Lixing, Zimmer, Andreas D., Zhu, Qihui, Mitros, Therese, Hellsten, Uffe, Loque, Dominique, Otillar, Robert, Salamov, Asaf, Schmutz, Jeremy, Shapiro, Harris, Lindquist, Erika, Lucas, Susan, Rokhsar, Daniel and Grigoriev, Igor V. (2011) The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science, 332 6032: 960-963. doi:10.1126/science.1203810 86   165 Cited 170 times in Scopus170 2