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Yagi, Kasumi, Satou, Yutaka, Mazet, Francoise, Shimeld, Sebastian M., Degnan, Bernard, Rokhsar, Daniel, Levine, Michael, Kohara, Yuji and Satoh, Nori (2003) A genomewide survey of developmental genes in Ciona intestinalis: III. Genes for Fox, ETS, nuclear receptors and NF- kB. Development Genes and Evolution, 213 5-6: 235-244. doi:10.1007/s00427-003-0322-z 94   91 Cited 96 times in Scopus96 0
Tyson, Gene W., Chapman, Jarrod, Hugenholtz, Philip, Allen, Eric E., Ram, Rachna J., Richardson, Paul M., Solovyev, Victor V., Rubin, Edward M., Rokhsar, Daniel S. and Banfield, Jillian F. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature, 428 6978: 37-43. doi:10.1038/nature02340 92   942 Cited 998 times in Scopus998 14
Srivastava, Mansi, Larroux, Claire, Lu, Daniel R., Mohanty, Kareshma, Chapman, Jarrod, Degnan, Bernard M. and Rokhsar, Daniel S. (2010) Early evolution of the LIM homeobox gene family. BMC Biology, 8 1-12. doi:10.1186/1741-7007-8-4 55   27 Cited 23 times in Scopus23 0
Taft, Ryan, Simons, Cas, Nahkuri, Satu, Oey, Harald, Korbie, Darren J., Mercer, Timothy R., Holst, Jeff, Ritchie, William, Wong, Justin J-L., Rasko, John E. J., Rokhsar, Daniel S., Degnan, Bernard M. and Mattick, John S. (2010) Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nature Structural and Molecular Biology, 17 8: 1030-1035. doi:10.1038/nsmb.1841 111   75 Cited 81 times in Scopus81 0
Jackson, Daniel J., McDougall, Carmel, Woodcroft, Ben, Moase, Patrick, Rose, Robert A., Kube, Michael, Reinhardt, Richard, Rokhsar, Daniel S., Montagnani, Caroline, Joubert, Caroline, Piquemal, David and Degnan, Bernard M. (2010) Parallel evolution of nacre building gene sets in molluscs. Molecular Biology and Evolution, 27 3: 591-608. doi:10.1093/molbev/msp278 90   71 Cited 73 times in Scopus73 3
Srivastava, Mansi, Simakov, Oleg, Chapman, Jarrod, Fahey, Bryony, Gauthier, Marie E. A., Mitros, Therese, Richards, Gemma S., Conaco, Cecilia, Dacre, Michael, Hellsten, Uffe, Larroux, Claire, Putnam, Nicholas H., Stanke, Mario, Adamska, Maja, Darling, Aaron, Degnan, Sandie M., Oakley, Todd H., Plachetzki, David C., Zhai, Yufeng F., Adamski, Marcin, Calcino, Andrew, Cummins, Scott F., Goodstein, David M., Harris, Christina, Jackson, Daniel J., Leys, Sally P., Shu, Shengqiang Q., Woodcroft, Ben J., Vervoort, Michel, Kosik, Kenneth S., Manning, Gerard, Degnan, Bernard M. and Rokhsar, Daniel S. (2010) The Amphimedon queenslandica genome and the evolution of animal complexity. Nature, 466 7307: 720-726. doi:10.1038/nature09201 152   293 Cited 293 times in Scopus293 61
Dehal, Paramvir, Satou, Yutaka, Campbell, Robert K., Chapman, Jarrod, Degnan, Bernard, De Tomaso, Anthony, Davidson, Brad, Gregorio, Anna Di, Gelpke, Maarten, Goodstein, David M., Harafuji, Naoe, Hastings, Kenneth E. M., Ho, Isaac, Hotta, Kohji, Huang, Wayne, Kawashima, Takeshi, Lemaire, Patrick, Martinez, Diego, Meinertzhagen, Ian A., Necula, Simona, Nonaka, Masaru, Putnam, Nik, Rash, Sam, Saiga, Hidetoshi, Satake, Masanobu, Terry, Astrid, Yamada, Lixy, Wang, Hong-Gang, Awazu, Satoko, Azumi, Kaoru, Boore, Jeffrey, Branno, Margherita, Chin-bow, Stephen, DeSantis, Rosaria, Doyle, Sharon, Francino, Pilar, Keys, David N., Haga, Shinobu, Hayashi, Hiroko, Hino, Kyosuke, Imai, Kaoru S., Inaba, Kazuo, Kano, Shungo, Kobayashi, Kenji, Kobayashi, Mari, Lee, Byung-In, Makabe, Kazuhiro W., Manohar, Chitra, Matassi, Giorgio, Medina, Monica, Mochizuki, Yasuaki, Mount, Steve, Morishita, Tomomi, Miura, Sachiko, Nakayama, Akie, Nishizaka, Satoko, Nomoto, Hisayo, Ohta, Fumiko, Rigoutsos, Isidore, Sano, Masako, Akane, Sasaki, Sasakura, Yasunori, Shoguchi, Eiichi, Shin-i, Tadasu, Spagnuolo, Antoinetta, Stainier, Didier, Suzuki, Miho M., Tassy, Olivier, Takatori, Naohito, Tokuoka, Miki, Yagi, Kasumi, Yoshizaki, Fumiko, Wada, Shuichi, Zhang, Cindy, Hyatt, P. Douglas, Larimer, Frank, Detter, Chris, Doggett, Norman, Glavina, Tijana, Hawkins, Trevor, Richardson, Paul, Lucas, Susan, Kohara, Yuji, Levine, Michael, Satoh, Nori and Rokhsar, Daniel S. (2002) The draft genome sequence of the ascidian Ciona intestinalis: insights into the evolutionary origins of chordates and vertebrates. Science, 298 5601: 2157-2167. doi:10.1126/science.1080049 245   1006 Cited 978 times in Scopus978 11
Banks, Jo Ann, Nishiyama, Tomoaki, Hasebe, Mitsuyasu, Bowman, John L., Gribskov, Michael, dePamphilis, Claude, Albert, Victor A., Aono, Naoki, Aoyama, Tsuyoshi, Ambrose, Barbara A., Ashton, Neil W., Axtell, Michael J., Barker, Elizabeth, Barker, Michael S., Bennetzen, Jeffrey L., Bonawitz, Nicholas D., Chapple, Clint, Cheng, Chaoyang, Correa, Luiz Gustavo Guedes, Dacre, Michael, DeBarry, Jeremy, Dreyer, Ingo, Elias, Marek, Engstrom, Eric M., Estelle, Mark, Feng, Liang, Finet, Cedric, Floyd, Sandra K., Frommer, Wolf B., Fujita, Tomomichi, Gramzow, Lydia, Gutensohn, Michael, Harholt, Jesper, Hattori, Mitsuru, Heyl, Alexander, Hirai, Tadayoshi, Hiwatashi, Yuji, Ishikawa, Masaki, Iwata, Mineko, Karol, Kenneth G., Koehler, Barbara, Kolukisaoglu, Uener, Kubo, Minoru, Kurata, Tetsuya, Lalonde, Sylvie, Li, Kejie, Li, Ying, Litt, Amy, Lyons, Eric, Manning, Gerard, Maruyama, Takeshi, Michael, Todd P., Mikami, Koji, Miyazaki, Saori, Morinaga, Shin-ichi, Murata, Takashi, Mueller-Roeber, Bernd, Nelson, David R., Obara, Mari, Oguri, Yasuko, Olmstead, Richard G., Onodera, Naoko, Petersen, Bent Larsen, Pils, Birgit, Prigge, Michael, Rensing, Stefan A., Mauricio Riano-Pachon, Diego, Roberts, Alison W., Sato, Yoshikatsu, Scheller, Henrik Vibe, Schulz, Burkhard, Schulz, Christian, Shakirov, Eugene V., Shibagaki, Nakako, Shinohara, Naoki, Shippen, Dorothy E., Sorensen, Iben, Sotooka, Ryo, Sugimoto, Nagisa, Sugita, Mamoru, Sumikawa, Naomi, Tanurdzic, Milos, Theissen, Guenter, Ulvskov, Peter, Wakazuki, Sachiko, Weng, Jing-Ke, Willats, William W. G. T., Wipf, Daniel, Wolf, Paul G., Yang, Lixing, Zimmer, Andreas D., Zhu, Qihui, Mitros, Therese, Hellsten, Uffe, Loque, Dominique, Otillar, Robert, Salamov, Asaf, Schmutz, Jeremy, Shapiro, Harris, Lindquist, Erika, Lucas, Susan, Rokhsar, Daniel and Grigoriev, Igor V. (2011) The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science, 332 6032: 960-963. doi:10.1126/science.1203810 88   169 Cited 174 times in Scopus174 5