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Desnues, Christelle, Rodriguez-Brito, Beltran, Rayhawk, Steve, Kelley, Scott, Tran, Tuong, Haynes, Matthew, Liu, Hong, Furlan, Mike, Wegley, Linda, Chau, Betty, Ruan, Yijun, Hall, Dana, Angly, Florent E., Edwards, Robert A., Li, Linlin, Thurber, Rebecca Vega, Reid, R. Pamela, Siefert, Janet, Souza, Valeria, Valentine, David L., Swan, Brandon K., Breitbart, Mya and Rohwer, Forest (2008) Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature, 452 7185: 340-343. doi:10.1038/nature06735 50   105 Cited 112 times in Scopus112 0
Kelly, Linda Wegley, Barott, Katie L., Dinsdale, Elizabeth, Friedlander, Alan M., Nosrat, Bahador, Obura, David, Sala, Enric, Sandin, Stuart A., Smith, Jennifer E., Vermeij, Mark J. A., Williams, Gareth J., Willner, Dana and Rohwer, Forest (2012) Black reefs: Iron-induced phase shifts on coral reefs. ISME Journal, 6 3: 638-649. doi:10.1038/ismej.2011.114 55   8 Cited 10 times in Scopus10 22
Ng, Terry Fei Fan, Willner, Dana L., Lim, Yan Wei, Schmieder, Robert, Chau, Betty, Nilsson, Christina, Anthony, Simon, Ruan, Yijun, Rohwer, Forest and Breitbart, Mya (2011) Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. PLoS One, 6 6: Article number e20579. doi:10.1371/journal.pone.0020579 54   47 Cited 52 times in Scopus52 9
Willner, Dana, Haynes, Matthew R., Furlan, Mike, Hanson, Nicole, Kirby, Breeann, Lim, Yan Wei, Rainey, Paul B., Schmieder, Robert, Youle, Merry, Conrad, Douglas and Rohwer, Forest (2012) Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American Journal of Respiratory Cell and Molecular Biology, 46 2: 127-131. doi:10.1165/rcmb.2011-0253OC 58   22 Cited 26 times in Scopus26 12
Wegley, Linda, Yu, Yanan, Breitbart, Mya, Casas, Veronica, Kline, David I. and Rohwer, Forest (2004) Coral-associated Archaea. Marine Ecology Progress Series, 273 89-96. doi:10.3354/meps273089 77   78 Cited 76 times in Scopus76 0
Dinsdale, Elizabeth A., Edwards, Robert A., Hall, Dana, Angly, Florent, Breitbart, Mya, Brulc, Jennifer M., Furlan, Mike, Desnues, Christelle, Haynes, Matthew, Li, Lin Lin, McDaniel, Lauren, Moran, Mary Ann, Nelson, Karen E., Nilsson, Christina, Olson, Robert, Paul, John, Brito, Beltran R., Ruan, Yi Jun, Swan, Brandon K., Stevens, Rick, Valentine, David L., Thurber, Rebecca V., Wegley, Linda, White, Bryan A. and Rohwer, Forest (2008) Functional metagenomic profiling of nine biomes. Nature, 455 7214: 830-830. doi:10.1038/nature07346 47   5 Cited 3 times in Scopus3 0
Dinsdale, Elizabeth A., Edwards, Robert A., Hall, Dana, Angly, Florent, Breitbart, Mya, Brulc, Jennifer M., Furlan, Mike, Desnues, Christelle, Haynes, Matthew, Li, Lin Lin, McDaniel, Lauren, Moran, Mary Ann, Nelson, Karen E., Nilsson, Christina, Olson, Robert, Paul, John, Brito, Beltran R., Ruan, Yi Jun, Swan, Brandon K., Stevens, Rick, Valentine, David L., Thurber, Rebecca V., Wegley, Linda, White, Bryan A. and Rohwer, Forest (2008) Functional metagenomic profiling of nine biomes. Nature, 452 7187: 629-632. doi:10.1038/nature06810 92   366 Cited 390 times in Scopus390 8
Angly, Florent E., Willner, Dana, Rohwer, Forest, Hugenholtz, Philip and Tyson, Gene W. (2012) Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Research, 40 12: e94.1-e94.8. doi:10.1093/nar/gks251 88 47 23 Cited 28 times in Scopus28 2
Smith, Jennifer E., Shaw, Morrigan, Edwards, Rob A., Obura, David, Pantos, Olga, Sala, Enric, Sandin, Stuart A., Smriga, Steven, Hatay, Mark and Rohwer, Forest L. (2006) Indirect effects of algae on coral: Algae-mediated, microbe-induced coral mortality. Ecology Letters, 9 7: 835-845. doi:10.1111/j.1461-0248.2006.00937.x 59   149 Cited 158 times in Scopus158 24
Thurber, Rebecca L. Vega, Barott, Katie L., Hall, Dana, Liu, Hong, Rodriguez-Mueller, Beltran, Desnues, Christelle, Edwards, Robert A., Haynes, Matthew, Angly, Florent E., Wegley, Linda and Rohwer, Forest L. (2008) Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proceedings of the National Academy of Sciences of the United States of America, 105 47: 18413-18418. doi:10.1073/pnas.0808985105 37   61 Cited 71 times in Scopus71 18
Willner, Dana, Furlan, Mike, Haynes, Matthew, Schmieder, Robert, Angly, Florent E., Silva, Joas, Tammadoni, Sassan, Nosrat, Bahador, Conrad, Douglas and Rohwer, Forest (2009) Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS One, 4 10: 1-12. doi:10.1371/journal.pone.0007370 40   108 Cited 114 times in Scopus114 16
Thurber, Rebecca Vega, Willner-Hall, Dana, Rodriguez-Mueller, Christelle, Desnues, Christelle, Edwards, Robert A., Angly, Florent, Dinsdale, Elizabeth, Kelly, Linda and Rohwer, Forest (2009) Metagenomic analysis of stressed coral holobionts. Environmental Microbiology, 11 8: 2148-2163. doi:10.1111/j.1462-2920.2009.01935.x 47   93 Cited 114 times in Scopus114 0
Willner, Dana, Furlan, Mike, Schmieder, Robert, Grasis, Juris A., Pride, David T., Relman, David A., Angly, Florent E., McDole, Tracey, Mariella, Ray P., Rohwer, Forest and Haynes, Matthew (2011) Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America, 108 Supp. 1: 4547-4553. doi:10.1073/pnas.1000089107 69   32 Cited 34 times in Scopus34 0
Lim, Yan Wei, Schmieder, Robert, Haynes, Matthew, Willner, Dana, Furlan, Mike, Youle, Merry, Abbott, Katelynn, Edwards, Robert, Evangelista, Jose, Conrad, Douglas and Rohwer, Forest (2013) Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities. Journal of Cystic Fibrosis, 12 2: 154-164. doi:10.1016/j.jcf.2012.07.009 45   5 Cited 16 times in Scopus16 1
Willner, Dana, Thurber, Rebecca Vega and Rohwer, Forest (2009) Metagenomic signatures of 86 microbial and viral metagenomes. Environmental Microbiology, 11 7: 1752-1766. doi:10.1111/j.1462-2920.2009.01901.x 47   55 Cited 59 times in Scopus59 0
He, Shaomei, Kunin, Victor, Haynes, Matthew, Martin, Hector Garcia, Ivanova, Natalia, Rohwer, Forest, Hugenholtz, Philip and McMahon, Katherine D. (2010) Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge. Environmental Microbiology, 12 5: 1205-1217. doi:10.1111/j.1462-2920.2010.02163.x 71   22 Cited 24 times in Scopus24 0
Dinsdale, Elizabeth A., Pantos, Olga, Smriga, Steven, Edwards, Robert A., Angly, Florent, Wegley, Linda, Hatay, Mark, Hall, Dana, Brown, Elysa, Haynes, Matthew, Krause, Lutz, Sala, Enric, Sandin, Stuart A., Thurber, Rebecca Vega, Willis, Bette L., Azam, Farooq, Knowlton, Nancy and Rohwer, Forest (2008) Microbial ecology of four coral atolls in the Northern Line Islands. PLoS ONE, 3 2: e1584-1-e1584-17. doi:10.1371/journal.pone.0001584 78   131 Cited 152 times in Scopus152 24
Cassman, Noriko, Prieto-Davo, Alejandra, Walsh, Kevin, Silva, Genivaldo G. Z., Angly, Florent, Akhter, Sajia, Barott, Katie, Busch, Julia, McDole, Tracey, Haggerty, J. Matthew, Willner, Dana, Alarcon, Gadiel, Ulloa, Osvaldo, DeLong, Edward F., Dutilh, Bas E., Rohwer, Forest and Dinsdale, Elizabeth A. (2012) Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology, 14 11: 3043-3065. doi:10.1111/j.1462-2920.2012.02891.x 34   9 Cited 8 times in Scopus8 7
Kuntz, Neilan M., Kline, David I., Sandin, Stuart A. and Rohwer, Forest (2005) Pathologies and mortality rates caused by organic carbon and nutrient stressors in three Caribbean coral species. Marine Ecology - Progress Series, 294 173-180. doi:10.3354/meps294173 67   59 Cited 63 times in Scopus63 0
Angly, Florent, Rodriguez-Brito, Beltran, Bangor, David, McNairnie, Pat, Breitbart, Mya, Salamon, Peter, Felts, Ben, Nulton, James, Mahaffy, Joseph and Rohwer, Forest (2005) PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinformatics, 6 . doi:10.1186/1471-2105-6-41 49   83 Cited 87 times in Scopus87 0
Hoffmann, Karl Heinz, Rodriguez-Brito, Beltran, Breitbart, Mya, Bangor, David, Angly, Florent, Felts, Ben, Nulton, James, Rohwer, Forest and Salamon, Peter (2007) Power law rank-abundance models for marine phage communities. Fems Microbiology Letters, 273 2: 224-228. doi:10.1111/j.1574-6968.2007.00790.x 23   12 Cited 12 times in Scopus12 0
Kline, David I., Kuntz, Neilan M., Breitbart, Mya, Knowlton, Nancy and Rohwer, Forest (2006) Role of Elevated Organic Carbon Levels and Microbial Activity in Coral Mortality. Marine Ecology Progress Series, 314 119-125. doi:10.3354/meps314119 76   92 Cited 96 times in Scopus96 0
Willner, Dana, Haynes, Matthew R., Furlan, Mike, Schmieder, Robert, Lim, Yan Wei, Rainey, Paul B., Rohwer, Forest and Conrad, Douglas (2012) Spatial distribution of microbial communities in the cystic fibrosis lung. ISME Journal, 6 2: 471-474. doi:10.1038/ismej.2011.104 51   32 Cited 40 times in Scopus40 13
Kline, David I., Bryant, John, Kisflaudy, Eddie, Rohwer, Gary, Nostropaur, Fernando, Grayson, Jodi, Knowlton, Nancy and Rohwer, Forest (2006) The Aquatic Automated Dosing and Maintenance System (AADAMS). Limnology and Oceanography: Methods, 4 JUN.: 184-192. 85   1 Cited 2 times in Scopus2
Angly, Florent E., Willner, Dana, Prieto-Davó, Alejandra, Edwards, Robert A., Schmieder, Robert, Vega-Thurber, Rebecca, Antonopoulos, Dionysios A., Barott, Katie, Cottrell, Matthew T., Desnues, Christelle, Dinsdale, Elizabeth A., Furlan, Mike, Haynes, Matthew, Henn, Matthew R., Hu, Yongfei, Kirchman, David L., McDole, Tracey, McPherson, John D., Meyer, John D., Miller, R. Michael, Mundt, Egbert, Naviaux, Robert K., Rodriguez-Mueller, Beltran, Stevens, Rick, Wegley, Linda, Zhang, Lixin, Zhu, Baoli and Rohwer, Forest (2009) The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Computational Biology, 5 12: e1000593.1-e1000593.10. doi:10.1371/journal.pcbi.1000593 44   68 Cited 75 times in Scopus75 2
Angly, Florent E., Felts, Ben, Breitbart, Mya, Salamon, Peter, Edwards, Robert A., Carlson, Craig, Chan, Amy M., Haynes, Matthew, Kelley, Scott, Liu, Hong, Mahaffy, Joseph M., Mueller, Jennifer E., Nulton, Jim, Olson, Robert, Parsons, Rachel, Rayhawk, Steve, Suttle, Curtis A. and Rohwer, Forest (2006) The marine viromes of four oceanic regions. PLoS Biology, 4 11: 2121-2131. doi:10.1371/journal.pbio.0040368 39   401 Cited 343 times in Scopus343 32
Breitbart, Mya, Haynes, Matthew, Kelley, Scott, Angly, Florent, Edwards, Robert A., Felts, Ben, Mahaffy, Joseph M., Mueller, Jennifer, Nulton, James, Rayhawk, Steve, Rodriguez-Brito, Beltran, Salamon, Peter and Rohwer, Forest (2008) Viral diversity and dynamics in an infant gut. Research in Microbiology, 159 5: 367-373. doi:10.1016/j.resmic.2008.04.006 26   87 Cited 89 times in Scopus89 14
Willner, Dana, Desnues, Christelle and Rohwer, Forest (2011). Viral metagenomics: From fish slime to the world. In Robert W. Li (Ed.), Metagenomics and its applications in agriculture, biomedicine, and environmental studies (pp. 337-366) Hauppauge, NY, U.S.A.: Nova Scientific Publishers. 287  
Reyes, Alejandro, Haynes, Matthew, Hanson, Nicole, Angly, Florent E., Heath, Andrew C., Rohwer, Forest and Gordon, Jeffrey I. (2010) Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature, 466 7304: 334-338. doi:10.1038/nature09199 56   226 Cited 221 times in Scopus221 79
Casas, Veronica, Kline, David A., Wegley , Linda, Yu, Yanan, Breitbart, Mya and Rohwer, Forest (2004) Widespread association of a Rickettsiales-like bacterium with reef-building corals. Environmental microbiology, 6 11: 1137-1148. doi:10.1111/j.1462-2920.2004.00647.x 38   32 Cited 34 times in Scopus34 0