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Desnues, Christelle, Rodriguez-Brito, Beltran, Rayhawk, Steve, Kelley, Scott, Tran, Tuong, Haynes, Matthew, Liu, Hong, Furlan, Mike, Wegley, Linda, Chau, Betty, Ruan, Yijun, Hall, Dana, Angly, Florent E., Edwards, Robert A., Li, Linlin, Thurber, Rebecca Vega, Reid, R. Pamela, Siefert, Janet, Souza, Valeria, Valentine, David L., Swan, Brandon K., Breitbart, Mya and Rohwer, Forest (2008) Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature, 452 7185: 340-343. doi:10.1038/nature06735 52   108 Cited 114 times in Scopus114 3
Kelly, Linda Wegley, Barott, Katie L., Dinsdale, Elizabeth, Friedlander, Alan M., Nosrat, Bahador, Obura, David, Sala, Enric, Sandin, Stuart A., Smith, Jennifer E., Vermeij, Mark J. A., Williams, Gareth J., Willner, Dana and Rohwer, Forest (2012) Black reefs: Iron-induced phase shifts on coral reefs. ISME Journal, 6 3: 638-649. doi:10.1038/ismej.2011.114 58   13 Cited 11 times in Scopus11 20
Ng, Terry Fei Fan, Willner, Dana L., Lim, Yan Wei, Schmieder, Robert, Chau, Betty, Nilsson, Christina, Anthony, Simon, Ruan, Yijun, Rohwer, Forest and Breitbart, Mya (2011) Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. PLoS One, 6 6: Article number e20579. doi:10.1371/journal.pone.0020579 57   53 Cited 58 times in Scopus58 8
Willner, Dana, Haynes, Matthew R., Furlan, Mike, Hanson, Nicole, Kirby, Breeann, Lim, Yan Wei, Rainey, Paul B., Schmieder, Robert, Youle, Merry, Conrad, Douglas and Rohwer, Forest (2012) Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American Journal of Respiratory Cell and Molecular Biology, 46 2: 127-131. doi:10.1165/rcmb.2011-0253OC 60   25 Cited 28 times in Scopus28 11
Wegley, Linda, Yu, Yanan, Breitbart, Mya, Casas, Veronica, Kline, David I. and Rohwer, Forest (2004) Coral-associated Archaea. Marine Ecology Progress Series, 273 89-96. doi:10.3354/meps273089 80   79 Cited 78 times in Scopus78 3
Dinsdale, Elizabeth A., Edwards, Robert A., Hall, Dana, Angly, Florent, Breitbart, Mya, Brulc, Jennifer M., Furlan, Mike, Desnues, Christelle, Haynes, Matthew, Li, Lin Lin, McDaniel, Lauren, Moran, Mary Ann, Nelson, Karen E., Nilsson, Christina, Olson, Robert, Paul, John, Brito, Beltran R., Ruan, Yi Jun, Swan, Brandon K., Stevens, Rick, Valentine, David L., Thurber, Rebecca V., Wegley, Linda, White, Bryan A. and Rohwer, Forest (2008) Functional metagenomic profiling of nine biomes. Nature, 455 7214: 830-830. doi:10.1038/nature07346 49   6 Cited 3 times in Scopus3 0
Dinsdale, Elizabeth A., Edwards, Robert A., Hall, Dana, Angly, Florent, Breitbart, Mya, Brulc, Jennifer M., Furlan, Mike, Desnues, Christelle, Haynes, Matthew, Li, Lin Lin, McDaniel, Lauren, Moran, Mary Ann, Nelson, Karen E., Nilsson, Christina, Olson, Robert, Paul, John, Brito, Beltran R., Ruan, Yi Jun, Swan, Brandon K., Stevens, Rick, Valentine, David L., Thurber, Rebecca V., Wegley, Linda, White, Bryan A. and Rohwer, Forest (2008) Functional metagenomic profiling of nine biomes. Nature, 452 7187: 629-632. doi:10.1038/nature06810 95   380 Cited 401 times in Scopus401 8
Angly, Florent E., Willner, Dana, Rohwer, Forest, Hugenholtz, Philip and Tyson, Gene W. (2012) Grinder: a versatile amplicon and shotgun sequence simulator. Nucleic Acids Research, 40 12: e94.1-e94.8. doi:10.1093/nar/gks251 91 52 24 Cited 31 times in Scopus31 2
Smith, Jennifer E., Shaw, Morrigan, Edwards, Rob A., Obura, David, Pantos, Olga, Sala, Enric, Sandin, Stuart A., Smriga, Steven, Hatay, Mark and Rohwer, Forest L. (2006) Indirect effects of algae on coral: Algae-mediated, microbe-induced coral mortality. Ecology Letters, 9 7: 835-845. doi:10.1111/j.1461-0248.2006.00937.x 61   165 Cited 165 times in Scopus165 22
Thurber, Rebecca L. Vega, Barott, Katie L., Hall, Dana, Liu, Hong, Rodriguez-Mueller, Beltran, Desnues, Christelle, Edwards, Robert A., Haynes, Matthew, Angly, Florent E., Wegley, Linda and Rohwer, Forest L. (2008) Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proceedings of the National Academy of Sciences of the United States of America, 105 47: 18413-18418. doi:10.1073/pnas.0808985105 39   68 Cited 75 times in Scopus75 17
Willner, Dana, Furlan, Mike, Haynes, Matthew, Schmieder, Robert, Angly, Florent E., Silva, Joas, Tammadoni, Sassan, Nosrat, Bahador, Conrad, Douglas and Rohwer, Forest (2009) Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS One, 4 10: 1-12. doi:10.1371/journal.pone.0007370 44   116 Cited 119 times in Scopus119 15
Thurber, Rebecca Vega, Willner-Hall, Dana, Rodriguez-Mueller, Christelle, Desnues, Christelle, Edwards, Robert A., Angly, Florent, Dinsdale, Elizabeth, Kelly, Linda and Rohwer, Forest (2009) Metagenomic analysis of stressed coral holobionts. Environmental Microbiology, 11 8: 2148-2163. doi:10.1111/j.1462-2920.2009.01935.x 53   100 Cited 121 times in Scopus121 0
Willner, Dana, Furlan, Mike, Schmieder, Robert, Grasis, Juris A., Pride, David T., Relman, David A., Angly, Florent E., McDole, Tracey, Mariella, Ray P., Rohwer, Forest and Haynes, Matthew (2011) Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America, 108 Supp. 1: 4547-4553. doi:10.1073/pnas.1000089107 72   36 Cited 35 times in Scopus35 0
Lim, Yan Wei, Schmieder, Robert, Haynes, Matthew, Willner, Dana, Furlan, Mike, Youle, Merry, Abbott, Katelynn, Edwards, Robert, Evangelista, Jose, Conrad, Douglas and Rohwer, Forest (2013) Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities. Journal of Cystic Fibrosis, 12 2: 154-164. doi:10.1016/j.jcf.2012.07.009 51   8 Cited 17 times in Scopus17 1
Willner, Dana, Thurber, Rebecca Vega and Rohwer, Forest (2009) Metagenomic signatures of 86 microbial and viral metagenomes. Environmental Microbiology, 11 7: 1752-1766. doi:10.1111/j.1462-2920.2009.01901.x 50   55 Cited 60 times in Scopus60 3
He, Shaomei, Kunin, Victor, Haynes, Matthew, Martin, Hector Garcia, Ivanova, Natalia, Rohwer, Forest, Hugenholtz, Philip and McMahon, Katherine D. (2010) Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge. Environmental Microbiology, 12 5: 1205-1217. doi:10.1111/j.1462-2920.2010.02163.x 72   23 Cited 26 times in Scopus26 3
Dinsdale, Elizabeth A., Pantos, Olga, Smriga, Steven, Edwards, Robert A., Angly, Florent, Wegley, Linda, Hatay, Mark, Hall, Dana, Brown, Elysa, Haynes, Matthew, Krause, Lutz, Sala, Enric, Sandin, Stuart A., Thurber, Rebecca Vega, Willis, Bette L., Azam, Farooq, Knowlton, Nancy and Rohwer, Forest (2008) Microbial ecology of four coral atolls in the Northern Line Islands. PLoS ONE, 3 2: e1584-1-e1584-17. doi:10.1371/journal.pone.0001584 84   140 Cited 157 times in Scopus157 24
Cassman, Noriko, Prieto-Davo, Alejandra, Walsh, Kevin, Silva, Genivaldo G. Z., Angly, Florent, Akhter, Sajia, Barott, Katie, Busch, Julia, McDole, Tracey, Haggerty, J. Matthew, Willner, Dana, Alarcon, Gadiel, Ulloa, Osvaldo, DeLong, Edward F., Dutilh, Bas E., Rohwer, Forest and Dinsdale, Elizabeth A. (2012) Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology, 14 11: 3043-3065. doi:10.1111/j.1462-2920.2012.02891.x 38   10 Cited 10 times in Scopus10 7
Kuntz, Neilan M., Kline, David I., Sandin, Stuart A. and Rohwer, Forest (2005) Pathologies and mortality rates caused by organic carbon and nutrient stressors in three Caribbean coral species. Marine Ecology - Progress Series, 294 173-180. doi:10.3354/meps294173 70   62 Cited 65 times in Scopus65 0
Angly, Florent, Rodriguez-Brito, Beltran, Bangor, David, McNairnie, Pat, Breitbart, Mya, Salamon, Peter, Felts, Ben, Nulton, James, Mahaffy, Joseph and Rohwer, Forest (2005) PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinformatics, 6 . doi:10.1186/1471-2105-6-41 52   86 Cited 92 times in Scopus92 0
Hoffmann, Karl Heinz, Rodriguez-Brito, Beltran, Breitbart, Mya, Bangor, David, Angly, Florent, Felts, Ben, Nulton, James, Rohwer, Forest and Salamon, Peter (2007) Power law rank-abundance models for marine phage communities. Fems Microbiology Letters, 273 2: 224-228. doi:10.1111/j.1574-6968.2007.00790.x 25   12 Cited 13 times in Scopus13 0
Kline, David I., Kuntz, Neilan M., Breitbart, Mya, Knowlton, Nancy and Rohwer, Forest (2006) Role of Elevated Organic Carbon Levels and Microbial Activity in Coral Mortality. Marine Ecology Progress Series, 314 119-125. doi:10.3354/meps314119 81   99 Cited 100 times in Scopus100 0
Willner, Dana, Haynes, Matthew R., Furlan, Mike, Schmieder, Robert, Lim, Yan Wei, Rainey, Paul B., Rohwer, Forest and Conrad, Douglas (2012) Spatial distribution of microbial communities in the cystic fibrosis lung. ISME Journal, 6 2: 471-474. doi:10.1038/ismej.2011.104 53   35 Cited 44 times in Scopus44 12
Kline, David I., Bryant, John, Kisflaudy, Eddie, Rohwer, Gary, Nostropaur, Fernando, Grayson, Jodi, Knowlton, Nancy and Rohwer, Forest (2006) The Aquatic Automated Dosing and Maintenance System (AADAMS). Limnology and Oceanography: Methods, 4 JUN.: 184-192. 88   1 Cited 2 times in Scopus2
Angly, Florent E., Willner, Dana, Prieto-Davó, Alejandra, Edwards, Robert A., Schmieder, Robert, Vega-Thurber, Rebecca, Antonopoulos, Dionysios A., Barott, Katie, Cottrell, Matthew T., Desnues, Christelle, Dinsdale, Elizabeth A., Furlan, Mike, Haynes, Matthew, Henn, Matthew R., Hu, Yongfei, Kirchman, David L., McDole, Tracey, McPherson, John D., Meyer, John D., Miller, R. Michael, Mundt, Egbert, Naviaux, Robert K., Rodriguez-Mueller, Beltran, Stevens, Rick, Wegley, Linda, Zhang, Lixin, Zhu, Baoli and Rohwer, Forest (2009) The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Computational Biology, 5 12: e1000593.1-e1000593.10. doi:10.1371/journal.pcbi.1000593 48   74 Cited 81 times in Scopus81 2
Angly, Florent E., Felts, Ben, Breitbart, Mya, Salamon, Peter, Edwards, Robert A., Carlson, Craig, Chan, Amy M., Haynes, Matthew, Kelley, Scott, Liu, Hong, Mahaffy, Joseph M., Mueller, Jennifer E., Nulton, Jim, Olson, Robert, Parsons, Rachel, Rayhawk, Steve, Suttle, Curtis A. and Rohwer, Forest (2006) The marine viromes of four oceanic regions. PLoS Biology, 4 11: 2121-2131. doi:10.1371/journal.pbio.0040368 41   415 Cited 352 times in Scopus352 35
Breitbart, Mya, Haynes, Matthew, Kelley, Scott, Angly, Florent, Edwards, Robert A., Felts, Ben, Mahaffy, Joseph M., Mueller, Jennifer, Nulton, James, Rayhawk, Steve, Rodriguez-Brito, Beltran, Salamon, Peter and Rohwer, Forest (2008) Viral diversity and dynamics in an infant gut. Research in Microbiology, 159 5: 367-373. doi:10.1016/j.resmic.2008.04.006 28   88 Cited 88 times in Scopus88 14
Willner, Dana, Desnues, Christelle and Rohwer, Forest (2011). Viral metagenomics: From fish slime to the world. In Robert W. Li (Ed.), Metagenomics and its applications in agriculture, biomedicine, and environmental studies (pp. 337-366) Hauppauge, NY, U.S.A.: Nova Scientific Publishers. 300  
Reyes, Alejandro, Haynes, Matthew, Hanson, Nicole, Angly, Florent E., Heath, Andrew C., Rohwer, Forest and Gordon, Jeffrey I. (2010) Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature, 466 7304: 334-338. doi:10.1038/nature09199 58   241 Cited 235 times in Scopus235 76
Casas, Veronica, Kline, David A., Wegley , Linda, Yu, Yanan, Breitbart, Mya and Rohwer, Forest (2004) Widespread association of a Rickettsiales-like bacterium with reef-building corals. Environmental microbiology, 6 11: 1137-1148. doi:10.1111/j.1462-2920.2004.00647.x 53   33 Cited 34 times in Scopus34 0