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Nagaraj, Shivashankar H. and Reverter, Antonio (2011) A Boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer. BMC Systems Biology, 5 35.1-35.15. doi:10.1186/1752-0509-5-35 84   15 Cited 21 times in Scopus21 0
Reverter, Antonio and Fortes, Marina R. S. (2013). Association weight matrix: a network-based approach towards functional genome-wide association studies. In Genome-wide association studies and genomic prediction (pp. 437-447) New York, NY, United States: Humana Press. doi:10.1007/978-1-62703-447-0_20 20   Cited 3 times in Scopus3 0
Fortes, Marina R. S., Reverter, Antonio, Zhang, Yuandan, Collis, Eliza, Nagaraj, Shivashankar H., Jonsson, Nick N., Prayaga, Kishore C., Barris, Wes and Hawken, Rachel J. (2010) Association weight matrix for the genetic dissection of puberty in beef cattle. Proceedings of the National Academy of Sciences of the United States of America, 107 31: 13642-13647. doi:10.1073/pnas.1002044107 181   30 Cited 36 times in Scopus36 0
Widmann, Philipp, Reverter, Antonio, Fortes, Marina R. S., Weikard, Rosemarie, Suhre, Karsten, Hammon, Harald, Albrecht, Elke and Kuehn, Christa (2013) A systems biology approach using metabolomic data reveals genes and pathways interacting to modulate divergent growth in cattle. BMC Genomics, 14 1: 798.1-798.17. doi:10.1186/1471-2164-14-798 20   2 Cited 1 times in Scopus1 0
Fortes, Marina R. S., Reverter, Antonio, Hawken, Rachel J., Bolormaa, Sunduimijid and Lehnert, Sigrid A. (2012) Candidate genes associated with testicular development, sperm quality, and hormone levels of inhibin, luteinizing hormone, and insulin-like growth factor 1 in brahman bulls. Biology of Reproduction, 87 3: 1-8. doi:10.1095/biolreprod.112.101089 50 1 10 Cited 13 times in Scopus13 0
da Silva, Elizabete C., de Jager, Nadia, Burgos-Paz, William, Reverter, Antonio, Perez-Enciso, Miguel and Roura, Eugeni (2014) Characterization of the porcine nutrient and taste receptor gene repertoire in domestic and wild populations across the globe. BMC Genomics, 15 1: 1057.1-1057.31. doi:10.1186/1471-2164-15-1057 30   0 Cited 0 times in Scopus0 4
De Jager, Nadia, Hudson, Nicolas J., Reverter, Antonio, Wang, Yong-Hong, Nagaraj, Shivashankar H., Cafe, Linda M., Greenwood, Paul L., Barnard, Ross T., Kongsuwan, Kritaya P. and Dalrymple, Brian P. (2011) Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle. Physiological Genomics, 43 9: 467-478. doi:10.1152/physiolgenomics.00226.2010 111   14 Cited 14 times in Scopus14 0
Ramayo-Caldas, Yuliaxis, Ballester, Maria, Fortes, Marina R. S., Esteve-Codina, Anna, Castello, Anna, Noguera, Jose L., Fernandez, Ana I., Perez-Enciso, Migual, Reverter, Antonio and Folch, Josep M. (2014) From SNP co-association to RNA co-expression: Novel insights into gene networks for intramuscular fatty acid composition in porcine. BMC Genomics, 15 1: . doi:10.1186/1471-2164-15-232 18   3 Cited 4 times in Scopus4 4
Madhamshettiwar, Piyush B., Maetschke, Stefan R., Davis, Melissa J., Reverter, Antonio and Ragan, Mark A. (2012) Gene regulatory network inference: Evaluation and application to ovarian cancer allows the prioritization of drug targets. Genome Medicine, 4 5: 41.1-41.15. doi:10.1186/gm340 57 1 19 Cited 27 times in Scopus27 11
Gu, Quan, Nagaraj, Shivashankar H., Hudson, Nicholas J., Dalrymple, Brian P. and Reverter, Antonio (2011) Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle. BMC Genomics, 12 23.1-23.13. doi:10.1186/1471-2164-12-23 39   6 Cited 7 times in Scopus7 0
Fortes, Marina R. S., DeAtley, Kasey L., Lehnert, Sigrid A., Burns, Brian M., Reverter, Antonio, Hawken, Rachel J., Boe-Hansen, Gry, Moore, Stephen S. and Thomas, Milton G. (2013) Genomic regions associated with fertility traits in male and female cattle: Advances from microsatellites to high-density chips and beyond. Animal Reproduction Science, 141 1-2: 1-19. doi:10.1016/j.anireprosci.2013.07.002 35   3 Cited 3 times in Scopus3 0
Strandberg Lutzow, Ylva C., Donaldson, Laurelea, Gray, Christian P., Vuocolo, Tony, Pearson, Roger D., Reverter, Antonio, Byrne, Keren A., Sheehy, Paul A., Windon, Ross and Tellam, Ross L. (2008) Identification of immune genes and proteins involved in the response of bovine mammary tissue to Staphylococcus aureus infection. BMC veterinary research, 4 Article: 18. doi:10.1186/1746-6148-4-18 66   0 Cited 44 times in Scopus44 0
Hudson, Nicholas J., Lyons, Russell E., Reverter, Antonio, Greenwood, Paul L. and Dalrymple, Brian P. (2013) Inferring the in vivo cellular program of developing bovine skeletal muscle from expression data. Gene Expression Patterns, 13 3-4: 109-125. doi:10.1016/j.gep.2013.02.001 9   2 Cited 3 times in Scopus3 0
Hudson, Nicholas J., Porto-Neto, Laercio R., Kijas, James, McWilliam, Sean, Taft, Ryan J. and Reverter, Antonio (2014) Information compression exploits patterns of genome composition to discriminate populations and highlight regions of evolutionary interest. BMC Bioinformatics, 15 Article ID.66: . doi:10.1186/1471-2105-15-66 50   0 Cited 0 times in Scopus0 2
Madhamshettiwar, Piyush B., Maetschke, Stefan R., Davis, Melissa J., Reverter, Antonio and Ragan, Mark A. (2014) INsPeCT: INtegrative Platform for Cancer Transcriptomics. Cancer Informatics, 13 59-66. doi:10.4137/CIN.S13630 31   Cited 0 times in Scopus0 15
de Camargo, Gregório M. F., Porto-Neto, Laercio R., Fortes, Marina R. S., Bunch, Rowan J., Tonhati, Humberto, Reverter, Antonio, Moore, Stephen S. and Lehnert, Sigrid A. (2015) Low frequency of Y anomaly detected in Australian Brahman cow-herds. Meta Gene, 3 59-61. doi:10.1016/j.mgene.2015.01.001 35   0
Canovas, Angela, Reverter, Antonio, DeAtley, Kasey L., Ashley, Ryan L., Colgrave, Michelle L., Fortes, Marina R. S., Islas-Trejo, Alma, Lehnert, Sigrid, Porto-Neto, Laercio, Rincon, Gonzalo, Silver, Gail A., Snelling, Warren M., Medrano, Juan F. and Thomas, Milton G. (2014) Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle. PLoS ONE, 9 7: . doi:10.1371/journal.pone.0102551 27   0 Cited 0 times in Scopus0 0
Fortes, Marina R. S., Suhaimi, Ainu H. M. S., Porto-Neto, Laercio R., McWilliam, Sean M., Flatscher-Bader, Trudi, Moore, Stephen S., D'Occhio, Michael J., Meira, Camila T., Thomas, Milton G., Snelling, Warren M., Reverter, Antonio and Lehnert, Sigrid A. (2014) Post-partum anoestrus in tropical beef cattle: a systems approach combining gene expression and genome-wide association results. Livestock Science, 166 158-166. doi:10.1016/j.livsci.2014.06.017 49   0 Cited 0 times in Scopus0 0
Reverter, Antonio, Hudson, Nicholas J., Nagaraj, Shivashankar H., Perez-Enciso, Miguel and Dalrymple, Brian P. (2010) Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data. Bioinformatics, 26 7: 896-904. doi:10.1093/bioinformatics/btq051 45   37 Cited 41 times in Scopus41 5
Ingham, Aaron B., Osborne, Simone A., Menzies, Moira, Briscoe, Suzie, Chen, Wei, Kongsuwan, Kritaya, Reverter, Antonio, Jeanes, Angela, Dalrymple, Brian P., Wijffels, Gene, Seymour, Robert and Hudson, Nicholas J. (2014) RNF14 is a regulator of mitochondrial and immune function in muscle. BMC Systems Biology, 8 1: 1-12. doi:10.1186/1752-0509-8-10 28   0 Cited 0 times in Scopus0 2
Porto-Neto, Laercio R., Reverter, Antonio, Prayaga, Kishore C., Chan, Eva K. F., Johnston, David J., Hawken, Rachel J., Fordyce, Geoffrey, Garcia, Jose Fernando, Sonstegard, Tad S., Bolormaa, Sunduimijid, Goddard, Michael E., Burrow, Heather M., Henshall, John M., Lehnert, Sigrid A. and Barendse, William (2014) The genetic architecture of climatic adaptation of tropical cattle. PLoS One, 9 11: . doi:10.1371/journal.pone.0113284 18   0 Cited 0 times in Scopus0 6
Nagaraj, Shivashankar H., Ingham, Aaron and Reverter, Antonio (2010) The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome. BMC Genomics, 11 Suppl. 4 Article No. S23: . doi:10.1186/1471-2164-11-S4-S23 45   3 Cited 4 times in Scopus4 0
Bower, Neil I., Casu, Rosanne E., Maclean, Donald J., Reverter, Antonio, Chapman, Scott C. and Manners, John M. (2005) Transcriptional response of sugarcane roots to methyl jasmonate. Plant Science, 168 3: 761-772. doi:10.1016/j.plantsci.2004.10.006 96   19 Cited 25 times in Scopus25 0
Waardenberg, Ashley J., Reverter, Antonio, Wells, Christine A. and Dalrymple, Brian P. (2008) Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle. BMC Systems Biology, 2 . doi:10.1186/1752-0509-2-88 69   1 Cited 2 times in Scopus2 0
Porto-Neto, Laercio R., Fortes, Marina R. S., McWilliam, Sean M., Lehnert, Sigrid A. and Reverter, Antonio (2014) Variation in genes involved in epigenetic processes offers insights into tropically adapted cattle diversity. Frontiers in Genetics, 5 APR: 1-6. doi:10.3389/fgene.2014.00089 29   Cited 0 times in Scopus0 0