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Barquist, Lars, Langridge, Gemma C., Turner, Daniel J., Phan, Minh-Duy, Turner, A. Keith, Bateman, Alex, Parkhill, Julian, Wain, John and Gardner, Paul P. (2013) A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Research, 41 8: 4549-4564. doi:10.1093/nar/gkt148 29   16 Cited 17 times in Scopus17 2
Walker, Thomas, Klasson, Lisa, Sebalhia, Mohammed, Sanders, Mandy J., Thompson, Nicholas R., Parkhill, Julian and Sinkins, Steven P. (2007) Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group. BMC Biology, 5 39-1-39-9. doi:10.1186/1741-7007-5-39 52   35 Cited 36 times in Scopus36 0
Petty, Nicola K., Feltwell, Theresa, Pickard, Derek, Clare, Simon, Toribio, Ana L., Fookes, Maria, Roberts, Kevin, Monson, Rita, Nair, Satheesh, Kingsley, Robert A., Bulgin, Richard, Wiles, Siouxsie, Goulding, David, Keane, Thomas, Corton, Craig, Lennard, Nicola, Harris, David, Willey, David, Rance, Richard, Yu, Lu, Choudhary, Jyoti S., Churcher, Carol, Quail, Michael A., Parkhill, Julian, Frankel, Gad, Dougan, Gordon, Salmond, George P. C. and Thomson, Nicholas R. (2011) Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux. PLoS Pathogens, 7 4: e1002018.1-e1002018.15. doi:10.1371/journal.ppat.1002018 120   8 Cited 8 times in Scopus8 3
Holt, Kathryn E., Phan, Minh Duy, Baker, Stephen, Duy, Pham Thanh, Nga, Tran Vu Thieu, Nair, Satheesh, Turner, A. Keith, Walsh, Ciara, Fanning, Se´amus, Farrell-Ward, Sine´ad, Dutta, Shanta, Kariuki, Sam, Weill, Francois-Xavier, Parkhill, Julian, Dougan, Gordon and Wain, John (2011) Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid. PLoS Neglected Tropical Diseases, 5 7: e1245-1-e1245-13. doi:10.1371/journal.pntd.0001245 59   25 Cited 23 times in Scopus23 7
Klasson, Lisa, Walker, Thomas, Sebaihia, Mohammed, Sanders, Mandy J., Quail, Michael A., Lord, Angela, Sanders, Susanne, Earl, Julie, O'Neill, Scott L., Thomson, Nicholas, Sinkins, Steven P. and Parkhill, Julian (2008) Genome Evolution of Wolbachia Strain wPip from the Culex pipiens Group. Molecular Biology and Evolution, 25 9: 1877-1887. doi:10.1093/molbev/msn133 84   98 Cited 89 times in Scopus89 0
Kyrpides, Nikos C., Hugenholtz, Philip, Eisen, Jonathan A., Woyke, Tanja, Goker, Markus, Parker, Charles T., Amann, Rudolf, Beck, Brian J., Chun, Jongsik, Colwell, Rita R., Danchin, Antoine, Dawyndt, Peter, Dedeurwaerdere, Tom, DeLong, Edward F., Detter, John C., De Vos, Paul, Donohue, Timothy J., Dong, Xiu-Zhu, Ehrlich, Dusko S., Fraser, Claire, Gibbs, Richard, Gilbert, Jack, Gilna, Paul, Glockner, Frank Oliver, Jansson, Janet K., Keasling, Jay D., Knight, Rob, Labeda, David, Lapidus, Alla, Lee, Jung-Sook, Li, Wen-Jun, MA, Juncai, Markowitz, Victor, Moore, Edward R. B., Morrison, Mark, Meyer, Folker, Nelson, Karen E., Ohkuma, Moriya, Ouzounis, Christos A., Pace, Norman, Parkhill,Julian, Qin, Nan, Rossello-Mora, Ramon, Sikorski, Johannes, Smith, David, Sogin, Mitch, Stevens, Rick, Stingl, Uli, Suzuki, Ken-ichiro, Taylor, Dorothea, Tiedje, Jim M., Tindall, Brian, Wagner, Michael, Weinstock, George, Weissenbach, Jean, White, Owen, Wang, Jun, Zhang, Lixin, Zhou, Yu-Guang, Field, Dawn, Whitman, William B., Garrity, George M. and Klenk, Hans-Peter (2014) Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLoS Biology, 12 8: e1001920.1-e1001920.7. doi:10.1371/journal.pbio.1001920 37   7 Cited 6 times in Scopus6 72
Murcia, Pablo R., Baillie, Gregory J., Daly, Janet, Elton, Debra, Jervis, Carley, Mumford, Jennifer A., Newton, Richard, Parrish, Colin R., Hoelzer, Karin, Dougan, Gordon, Parkhill, Julian, Lennard, Nicola, Ormond, Doug, Moule, Sharon, Whitwham, Andrew, McCauley, John W., McKinley, Trevelyan J., Holmes, Edward C., Grenfell, Bryan T. and Wood, James L. N. (2010) Intra- and interhost evolutionary dynamics of equine influenza virus. Journal of Virology, 84 14: 6943-6954. doi:10.1128/JVI.00112-10 23   39 Cited 41 times in Scopus41 0
Holt, Kathryn E., Thomson, Nicholas R., Wain, John, Phan, Minh Duy, Nair, Satheesh, Hasan, Rumina, Bhutta, Zulfiqar A., Quail, Michael A., Norbertczak, Halina, Walker, Danielle, Dougan, Gordon and Parkhill, Julian (2007) Multidrug-resistant Salmonella enterica serovar paratyphi A harbors IncHI1 plasmids similar to those found in serovar typhi. Journal of Bacteriology, 189 11: 4257-4264. doi:10.1128/JB.00232-07 44   34 Cited 33 times in Scopus33 0
Fookes, Maria, Schroeder, Gunnar N., Langridge, Gemma C., Blondel, Carlos J., Mammina, Caterina, Connor, Thomas R., Seth-Smith, Helena, Vernikos, Georgios S., Robinson, Keith S., Sanders, Mandy, Petty, Nicola K., Kingsley, Robert A., Baumler, Andreas J., Nuccio, Sean-Paul, Contreras, Ines, Santiviago, Carlos A., Maskell, Duncan, Barrow, Paul, Humphrey, Tom, Nastasi, Antonino, Roberts, Mark, Frankel, Gad, Parkhill, Julian, Dougan, Gordon and Thomson, Nicholas R. (2011) Salmonella bongori provides insights into the evolution of the salmonellae. PLoS Pathogens, 7 8: e1002191.1-e1002191.16. doi:10.1371/journal.ppat.1002191 59   34 Cited 33 times in Scopus33 5
Langridge, Gemma C., Phan, Minh-Duy, Turner, Daniel J., Perkins, Timothy T., Parts, Leopold, Haase, Jana, Charles, Ian, Maskell, Duncan J., Peters, Sarah E., Dougan, Gordon, Wain, John, Parkhill, Julian and Turner, A. Keith (2009) Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Research, 19 12: 2308-2316. doi:10.1101/gr.097097.109 59   139 Cited 140 times in Scopus140 11
Da Cunha, Violette, Davies, Mark R., Douarre, Pierre-Emmanuel, Rosinski-Chupin, Isabelle, Margarit, Immaculada, Spinali, Sebastien, Perkins, Tim, Lechat, Pierre, Dmytruk, Nicolas, Sauvage, Elisabeth, Ma, Laurence, Romi, Benedetta, Tichit, Magali, Lopez-Sanchez, Maria-Jose, Descorps-Declere, Stephane, Souche, Erika, Buchrieser, Carmen, Trieu-Cuot, Patrick, Moszer, Ivan, Clermont, Dominique, Maione, Domenico, Bouchier, Christiane, McMillan, David J., Parkhill, Julian, Telford, John L., Dougan, Gordan, Walker, Mark J., The DEVANI Consortium, Holden, Matthew T. G., Poyart, Claire and Glaser, Philippe (2014) Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline. Nature Communications, 5 4544.1-4544.11. doi:10.1038/ncomms5544 29   2 Cited 2 times in Scopus2 131
Petty, Nicola K., Bulgin, Richard, Crepin, Valerie F., Cerdeño-Tárraga, Ana M., Schroeder, Gunnar N., Quail, Michael A., Lennard, Nicola, Corton, Craig, Barron, Andrew, Clark, Louise, Toribio, Ana L., Parkhill, Julian, Dougan, Gordon, Frankel, Gad and Thomson, Nicholas R. (2010) The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli. Journal of Bacteriology, 192 2: 525-538. doi:10.1128/JB.01144-09 63   52 Cited 51 times in Scopus51 0
Ren, Chuan-Peng, Beatson, Scott A., Parkhill, Julian and Pallen, Mark J. (2005) The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli. Journal of Bacteriology, 187 4: 1430-1440. doi:10.1128/JB.187.4.1430-1440.2005 50   39 Cited 35 times in Scopus35 1
Field, Dawn, Garrity, George, Gray, Tanya, Morrison, Norman, Selengut, Jeremy, Sterk, Peter, Tatusova, Tatiana, Thomson, Nicholas, Allen, Michael J., Angiuoli, Samuel V., Ashburner, Michael, Axelrod, Nelson, Baldauf, Sandra, Ballard, Stuart, Boore, Jeffrey, Cochrane, Guy, Cole, James, Dawyndt, Peter, De Vos, Paul, dePamphilis, Claude, Edwards, Robert, Faruque, Nadeem, Feldman, Robert, Gilbert, Jack, Gilna, Paul, Glockner, Frank Oliver, Goldstein, Philip, Guralnick, Robert, Haft, Dan, Hancock, David, Hermjakob, Henning, Hertz-Fowler, Christiane, Hugenholtz, Philip, Joint, Ian, Kagan, Leonid, Kane, Matthew, Kennedy, Jessie, Kowalchuk, George, Kottmann, Renzo, Kolker, Eugene, Kravitz, Saul, Kyrpides, Nikos, Leebens-Mack, Jim, Lewis, Suzanna E., Li, Kelvin, Lister, Allyson L., Lord, Phillip, Maltsev, Natalia, Markowitz, Victor, Martiny, Jennifer, Methe, Barbara, Mizrachi, Ilene, Moxon, Richard, Nelson, Karen, Parkhill, Julian, Proctor, Lita, White, Owen, Sansone, Susanna-Assunta, Spiers, Andrew, Stevens, Robert, Swift, Paul, Taylor, Chris, Tateno, Yoshio, Tett, Adrian, Turner, Sarah, Ussery, David, Vaughan, Bob, Ward, Naomi, Whetzel, Trish, Gil, Ingio San, Wilson, Gareth and Wipat, Anil (2008) The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26 5: 541-547. doi:10.1038/nbt1360 89   470 Cited 434 times in Scopus434 29
Sinkins, Steven P., Walker, Thomas, Lynd, Amy R., Steven, Andrew R., Makepeace, Ben L., Godfray, J., Charles, H. and Parkhill, Julian (2005) Wolbachia variability and host effects on crossing type in Culex mosquitoes. Nature, 436 7048: 257-260. doi:10.1038/nature03629 41   82 Cited 84 times in Scopus84 0