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Barquist, Lars, Langridge, Gemma C., Turner, Daniel J., Phan, Minh-Duy, Turner, A. Keith, Bateman, Alex, Parkhill, Julian, Wain, John and Gardner, Paul P. (2013) A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Research, 41 8: 4549-4564. doi:10.1093/nar/gkt148 22   12 Cited 12 times in Scopus12 2
Walker, Thomas, Klasson, Lisa, Sebalhia, Mohammed, Sanders, Mandy J., Thompson, Nicholas R., Parkhill, Julian and Sinkins, Steven P. (2007) Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group. BMC Biology, 5 39-1-39-9. doi:10.1186/1741-7007-5-39 51   34 Cited 34 times in Scopus34 0
Petty, Nicola K., Feltwell, Theresa, Pickard, Derek, Clare, Simon, Toribio, Ana L., Fookes, Maria, Roberts, Kevin, Monson, Rita, Nair, Satheesh, Kingsley, Robert A., Bulgin, Richard, Wiles, Siouxsie, Goulding, David, Keane, Thomas, Corton, Craig, Lennard, Nicola, Harris, David, Willey, David, Rance, Richard, Yu, Lu, Choudhary, Jyoti S., Churcher, Carol, Quail, Michael A., Parkhill, Julian, Frankel, Gad, Dougan, Gordon, Salmond, George P. C. and Thomson, Nicholas R. (2011) Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux. PLoS Pathogens, 7 4: e1002018.1-e1002018.15. doi:10.1371/journal.ppat.1002018 115   7 Cited 6 times in Scopus6 0
Holt, Kathryn E., Phan, Minh Duy, Baker, Stephen, Duy, Pham Thanh, Nga, Tran Vu Thieu, Nair, Satheesh, Turner, A. Keith, Walsh, Ciara, Fanning, Se´amus, Farrell-Ward, Sine´ad, Dutta, Shanta, Kariuki, Sam, Weill, Francois-Xavier, Parkhill, Julian, Dougan, Gordon and Wain, John (2011) Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid. PLoS Neglected Tropical Diseases, 5 7: e1245-1-e1245-13. doi:10.1371/journal.pntd.0001245 55   17 Cited 18 times in Scopus18 7
Klasson, Lisa, Walker, Thomas, Sebaihia, Mohammed, Sanders, Mandy J., Quail, Michael A., Lord, Angela, Sanders, Susanne, Earl, Julie, O'Neill, Scott L., Thomson, Nicholas, Sinkins, Steven P. and Parkhill, Julian (2008) Genome Evolution of Wolbachia Strain wPip from the Culex pipiens Group. Molecular Biology and Evolution, 25 9: 1877-1887. doi:10.1093/molbev/msn133 81   91 Cited 84 times in Scopus84 0
Kyrpides, Nikos C., Hugenholtz, Philip, Eisen, Jonathan A., Woyke, Tanja, Goker, Markus, Parker, Charles T., Amann, Rudolf, Beck, Brian J., Chun, Jongsik, Colwell, Rita R., Danchin, Antoine, Dawyndt, Peter, Dedeurwaerdere, Tom, DeLong, Edward F., Detter, John C., De Vos, Paul, Donohue, Timothy J., Dong, Xiu-Zhu, Ehrlich, Dusko S., Fraser, Claire, Gibbs, Richard, Gilbert, Jack, Gilna, Paul, Glockner, Frank Oliver, Jansson, Janet K., Keasling, Jay D., Knight, Rob, Labeda, David, Lapidus, Alla, Lee, Jung-Sook, Li, Wen-Jun, MA, Juncai, Markowitz, Victor, Moore, Edward R. B., Morrison, Mark, Meyer, Folker, Nelson, Karen E., Ohkuma, Moriya, Ouzounis, Christos A., Pace, Norman, Parkhill,Julian, Qin, Nan, Rossello-Mora, Ramon, Sikorski, Johannes, Smith, David, Sogin, Mitch, Stevens, Rick, Stingl, Uli, Suzuki, Ken-ichiro, Taylor, Dorothea, Tiedje, Jim M., Tindall, Brian, Wagner, Michael, Weinstock, George, Weissenbach, Jean, White, Owen, Wang, Jun, Zhang, Lixin, Zhou, Yu-Guang, Field, Dawn, Whitman, William B., Garrity, George M. and Klenk, Hans-Peter (2014) Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLoS Biology, 12 8: e1001920.1-e1001920.7. doi:10.1371/journal.pbio.1001920 17   1 73
Murcia, Pablo R., Baillie, Gregory J., Daly, Janet, Elton, Debra, Jervis, Carley, Mumford, Jennifer A., Newton, Richard, Parrish, Colin R., Hoelzer, Karin, Dougan, Gordon, Parkhill, Julian, Lennard, Nicola, Ormond, Doug, Moule, Sharon, Whitwham, Andrew, McCauley, John W., McKinley, Trevelyan J., Holmes, Edward C., Grenfell, Bryan T. and Wood, James L. N. (2010) Intra- and interhost evolutionary dynamics of equine influenza virus. Journal of Virology, 84 14: 6943-6954. doi:10.1128/JVI.00112-10 21   35 Cited 39 times in Scopus39 0
Holt, Kathryn E., Thomson, Nicholas R., Wain, John, Phan, Minh Duy, Nair, Satheesh, Hasan, Rumina, Bhutta, Zulfiqar A., Quail, Michael A., Norbertczak, Halina, Walker, Danielle, Dougan, Gordon and Parkhill, Julian (2007) Multidrug-resistant Salmonella enterica serovar paratyphi A harbors IncHI1 plasmids similar to those found in serovar typhi. Journal of Bacteriology, 189 11: 4257-4264. doi:10.1128/JB.00232-07 42   32 Cited 32 times in Scopus32 0
Fookes, Maria, Schroeder, Gunnar N., Langridge, Gemma C., Blondel, Carlos J., Mammina, Caterina, Connor, Thomas R., Seth-Smith, Helena, Vernikos, Georgios S., Robinson, Keith S., Sanders, Mandy, Petty, Nicola K., Kingsley, Robert A., Baumler, Andreas J., Nuccio, Sean-Paul, Contreras, Ines, Santiviago, Carlos A., Maskell, Duncan, Barrow, Paul, Humphrey, Tom, Nastasi, Antonino, Roberts, Mark, Frankel, Gad, Parkhill, Julian, Dougan, Gordon and Thomson, Nicholas R. (2011) Salmonella bongori provides insights into the evolution of the salmonellae. PLoS Pathogens, 7 8: e1002191.1-e1002191.16. doi:10.1371/journal.ppat.1002191 58   29 Cited 29 times in Scopus29 2
Langridge, Gemma C., Phan, Minh-Duy, Turner, Daniel J., Perkins, Timothy T., Parts, Leopold, Haase, Jana, Charles, Ian, Maskell, Duncan J., Peters, Sarah E., Dougan, Gordon, Wain, John, Parkhill, Julian and Turner, A. Keith (2009) Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Research, 19 12: 2308-2316. doi:10.1101/gr.097097.109 58   130 Cited 131 times in Scopus131 11
Da Cunha, Violette, Davies, Mark R., Douarre, Pierre-Emmanuel, Rosinski-Chupin, Isabelle, Margarit, Immaculada, Spinali, Sebastien, Perkins, Tim, Lechat, Pierre, Dmytruk, Nicolas, Sauvage, Elisabeth, Ma, Laurence, Romi, Benedetta, Tichit, Magali, Lopez-Sanchez, Maria-Jose, Descorps-Declere, Stephane, Souche, Erika, Buchrieser, Carmen, Trieu-Cuot, Patrick, Moszer, Ivan, Clermont, Dominique, Maione, Domenico, Bouchier, Christiane, McMillan, David J., Parkhill, Julian, Telford, John L., Dougan, Gordan, Walker, Mark J., The DEVANI Consortium, Holden, Matthew T. G., Poyart, Claire and Glaser, Philippe (2014) Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline. Nature Communications, 5 4544.1-4544.11. doi:10.1038/ncomms5544 14   1 Cited 1 times in Scopus1 130
Petty, Nicola K., Bulgin, Richard, Crepin, Valerie F., Cerdeño-Tárraga, Ana M., Schroeder, Gunnar N., Quail, Michael A., Lennard, Nicola, Corton, Craig, Barron, Andrew, Clark, Louise, Toribio, Ana L., Parkhill, Julian, Dougan, Gordon, Frankel, Gad and Thomson, Nicholas R. (2010) The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli. Journal of Bacteriology, 192 2: 525-538. doi:10.1128/JB.01144-09 61   43 Cited 44 times in Scopus44 0
Ren, Chuan-Peng, Beatson, Scott A., Parkhill, Julian and Pallen, Mark J. (2005) The Flag-2 locus, an ancestral gene cluster, is potentially associated with a novel flagellar system from Escherichia coli. Journal of Bacteriology, 187 4: 1430-1440. doi:10.1128/JB.187.4.1430-1440.2005 48   39 Cited 35 times in Scopus35 1
Field, Dawn, Garrity, George, Gray, Tanya, Morrison, Norman, Selengut, Jeremy, Sterk, Peter, Tatusova, Tatiana, Thomson, Nicholas, Allen, Michael J., Angiuoli, Samuel V., Ashburner, Michael, Axelrod, Nelson, Baldauf, Sandra, Ballard, Stuart, Boore, Jeffrey, Cochrane, Guy, Cole, James, Dawyndt, Peter, De Vos, Paul, dePamphilis, Claude, Edwards, Robert, Faruque, Nadeem, Feldman, Robert, Gilbert, Jack, Gilna, Paul, Glockner, Frank Oliver, Goldstein, Philip, Guralnick, Robert, Haft, Dan, Hancock, David, Hermjakob, Henning, Hertz-Fowler, Christiane, Hugenholtz, Philip, Joint, Ian, Kagan, Leonid, Kane, Matthew, Kennedy, Jessie, Kowalchuk, George, Kottmann, Renzo, Kolker, Eugene, Kravitz, Saul, Kyrpides, Nikos, Leebens-Mack, Jim, Lewis, Suzanna E., Li, Kelvin, Lister, Allyson L., Lord, Phillip, Maltsev, Natalia, Markowitz, Victor, Martiny, Jennifer, Methe, Barbara, Mizrachi, Ilene, Moxon, Richard, Nelson, Karen, Parkhill, Julian, Proctor, Lita, White, Owen, Sansone, Susanna-Assunta, Spiers, Andrew, Stevens, Robert, Swift, Paul, Taylor, Chris, Tateno, Yoshio, Tett, Adrian, Turner, Sarah, Ussery, David, Vaughan, Bob, Ward, Naomi, Whetzel, Trish, Gil, Ingio San, Wilson, Gareth and Wipat, Anil (2008) The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26 5: 541-547. doi:10.1038/nbt1360 85   466 Cited 432 times in Scopus432 26
Sinkins, Steven P., Walker, Thomas, Lynd, Amy R., Steven, Andrew R., Makepeace, Ben L., Godfray, J., Charles, H. and Parkhill, Julian (2005) Wolbachia variability and host effects on crossing type in Culex mosquitoes. Nature, 436 7048: 257-260. doi:10.1038/nature03629 40   81 Cited 83 times in Scopus83 0