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O’Connor, Patrick and McDonald, Daniel (2009). An evaluation of the TOOL (Toowoomba Online Literature Search) Protocol for improving literature searches in a hospital setting. In: Positioning the Profession: the Tenth International Congress on Medical Librarianship, Brisbane, Australia, (1-5). August 31-September 4, 2009. 376 695
McDonald, Daniel, Price, Morgan N., Goodrich, Julia, Nawrocki, Eric P., DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob and Hugenholtz, Philip (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME Journal, 6 3: 610-618. doi:10.1038/ismej.2011.139 72   277 Cited 271 times in Scopus271 2
Harris, J. Kirk, Caporaso, J. Gregory, Walker, Jeffrey J., Spear, John R., Gold, Nicholas J., Robertson, Charles E., Hugenholtz, Philip, Goodrich, Julia, McDonald, Daniel, Knights, Dan, Marshall, Paul, Tufo, Henry, Knight, Rob and Pace, Norman R. (2013) Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. ISME Journal, 7 1: 50-60. doi:10.1038/ismej.2012.79 36   24 Cited 5 times in Scopus5 1