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McDonald, Daniel, Price, Morgan N., Goodrich, Julia, Nawrocki, Eric P., DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob and Hugenholtz, Philip (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME Journal, 6 3: 610-618. doi:10.1038/ismej.2011.139 72   277 Cited 271 times in Scopus271 2
Kyrpides, Nikos C., Hugenholtz, Philip, Eisen, Jonathan A., Woyke, Tanja, Goker, Markus, Parker, Charles T., Amann, Rudolf, Beck, Brian J., Chun, Jongsik, Colwell, Rita R., Danchin, Antoine, Dawyndt, Peter, Dedeurwaerdere, Tom, DeLong, Edward F., Detter, John C., De Vos, Paul, Donohue, Timothy J., Dong, Xiu-Zhu, Ehrlich, Dusko S., Fraser, Claire, Gibbs, Richard, Gilbert, Jack, Gilna, Paul, Glockner, Frank Oliver, Jansson, Janet K., Keasling, Jay D., Knight, Rob, Labeda, David, Lapidus, Alla, Lee, Jung-Sook, Li, Wen-Jun, MA, Juncai, Markowitz, Victor, Moore, Edward R. B., Morrison, Mark, Meyer, Folker, Nelson, Karen E., Ohkuma, Moriya, Ouzounis, Christos A., Pace, Norman, Parkhill,Julian, Qin, Nan, Rossello-Mora, Ramon, Sikorski, Johannes, Smith, David, Sogin, Mitch, Stevens, Rick, Stingl, Uli, Suzuki, Ken-ichiro, Taylor, Dorothea, Tiedje, Jim M., Tindall, Brian, Wagner, Michael, Weinstock, George, Weissenbach, Jean, White, Owen, Wang, Jun, Zhang, Lixin, Zhou, Yu-Guang, Field, Dawn, Whitman, William B., Garrity, George M. and Klenk, Hans-Peter (2014) Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLoS Biology, 12 8: e1001920.1-e1001920.7. doi:10.1371/journal.pbio.1001920 37   7 Cited 6 times in Scopus6 72
Werner, Jeffrey J., Koren, Omry, Hugenholtz, Philip, DeSantis, Todd Z., Walters, William A., Caporaso, J. Gregory, Angenent, Largus T., Knight, Rob and Ley, Ruth E (2012) Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. ISME Journal, 6 1: 94-103. doi:10.1038/ismej.2011.82 80   66 Cited 69 times in Scopus69 1
Yilmaz, Pelin, Kottmann, Renzo, Field, Dawn, Knight, Rob, Cole, James R., Amaral-Zettler, Linda, Gilbert, Jack A., Karsch-Mizrachi, Ilene, Johnston, Anjanette, Cochrane, Guy, Vaughan, Robert, Hunter, Christopher, Park, Joonhong, Morrison, Norman, Rocca-Serra, Philippe, Sterk, Peter, Arumugam, Manimozhiyan, Bailey, Mark, Baumgartner, Laura, Birren, Bruce W., Blaser, Martin J., Bonazzi, Vivien, Booth, Tim, Bork, Peer, Bushman, Frederic D., Buttigieg, Pier Luigi., Chain, Patrick S. G., Charlson, Emily, Costello, Elizabeth K., Huot-Creasy, Heather, Dawyndt, Peter, DeSantis, Todd, Fierer, Noah, Fuhrman, JA, Gallery, Rachel E., Gevers, Dirk, Gibbs, Richard A., Gil, Inigo San, Gonzalez, Antonio, Gordon, Jeffrey I., Guralnick, Robert, Hankeln, Wolfgang, Highlander, Sarah, Hugenholtz, Philip, Jansson, J, Kau, Andrew L., Kelley, Scott T., Kennedy, Jerry, Knights, Dan, Koren, Omry, Kuczynski, Justin, Kyrpides, Nikos, Larsen, Robert, Lauber, Christian L., Legg, Teresa, Ley, Ruth E., Lozupone, Catherine A., Ludwig, Wolfgang, Lyons, Donna, Maguire, Eamonn, Methe, Barbara A., Meyer, Folker, Muegge, Brian, Nakielny, Sara, Nelson, Karen E., Nemergut, Diana, Neufeld, Josh D,, Newbold, Lindsay K., Oliver, Anna E., Pace, Norman R., Palanisamy, Giriprakash, Peplies, Jörg, Petrosino, Joseph, Proctor, Lita, Pruesse, Elmar, Quast, Christian, Raes, Jeroen, Ratnasingham, Sujeevan, Ravel, Jacques, Relman, David A., Assunta-Sansone, Susanna, Schloss, Patrick D., Schriml, Lynn, Sinha, Rohini, Smith, Michelle I., Sodergren, Erica, Spor, Aymé, Stombaugh, Jesse, Tiedje, James M, Ward, Doyle V., Weinstock, George M., Wendel, Doug, White, Owen, Whiteley, Andrew, Wilke, Andreas, Wortman, Jennifer R., Yatsunenko, Tany and Glockner, Frank Oliver (2011) Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology, 29 5: 415-420. doi:10.1038/nbt.1823 97   107 Cited 105 times in Scopus105 22
Harris, J. Kirk, Caporaso, J. Gregory, Walker, Jeffrey J., Spear, John R., Gold, Nicholas J., Robertson, Charles E., Hugenholtz, Philip, Goodrich, Julia, McDonald, Daniel, Knights, Dan, Marshall, Paul, Tufo, Henry, Knight, Rob and Pace, Norman R. (2013) Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. ISME Journal, 7 1: 50-60. doi:10.1038/ismej.2012.79 36   24 Cited 5 times in Scopus5 1
Knight, Rob, Jansson, Janet, Field, Dawn, Fierer, Noah, Desai, Narayan, Fuhrman, Jed A., Hugenholtz, Phil, van der Lelie, Daniel, Meyer, Folker, Stevens, Rick, Bailey, Mark J., Gordon, Jeffrey I., Kowalchuk, George A. and Gilbert, Jack A. (2012) Unlocking the potential of metagenomics through replicated experimental design. Nature Biotechnology, 30 6: 513-520. doi:10.1038/nbt.2235 105   60 Cited 54 times in Scopus54 6