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McDonald, Daniel, Price, Morgan N., Goodrich, Julia, Nawrocki, Eric P., DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob and Hugenholtz, Philip (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME Journal, 6 3: 610-618. doi:10.1038/ismej.2011.139 65   226 Cited 220 times in Scopus220 2
Kyrpides, Nikos C., Hugenholtz, Philip, Eisen, Jonathan A., Woyke, Tanja, Goker, Markus, Parker, Charles T., Amann, Rudolf, Beck, Brian J., Chun, Jongsik, Colwell, Rita R., Danchin, Antoine, Dawyndt, Peter, Dedeurwaerdere, Tom, DeLong, Edward F., Detter, John C., De Vos, Paul, Donohue, Timothy J., Dong, Xiu-Zhu, Ehrlich, Dusko S., Fraser, Claire, Gibbs, Richard, Gilbert, Jack, Gilna, Paul, Glockner, Frank Oliver, Jansson, Janet K., Keasling, Jay D., Knight, Rob, Labeda, David, Lapidus, Alla, Lee, Jung-Sook, Li, Wen-Jun, MA, Juncai, Markowitz, Victor, Moore, Edward R. B., Morrison, Mark, Meyer, Folker, Nelson, Karen E., Ohkuma, Moriya, Ouzounis, Christos A., Pace, Norman, Parkhill,Julian, Qin, Nan, Rossello-Mora, Ramon, Sikorski, Johannes, Smith, David, Sogin, Mitch, Stevens, Rick, Stingl, Uli, Suzuki, Ken-ichiro, Taylor, Dorothea, Tiedje, Jim M., Tindall, Brian, Wagner, Michael, Weinstock, George, Weissenbach, Jean, White, Owen, Wang, Jun, Zhang, Lixin, Zhou, Yu-Guang, Field, Dawn, Whitman, William B., Garrity, George M. and Klenk, Hans-Peter (2014) Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLoS Biology, 12 8: e1001920.1-e1001920.7. doi:10.1371/journal.pbio.1001920 21   1 72
Werner, Jeffrey J., Koren, Omry, Hugenholtz, Philip, DeSantis, Todd Z., Walters, William A., Caporaso, J. Gregory, Angenent, Largus T., Knight, Rob and Ley, Ruth E (2012) Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. ISME Journal, 6 1: 94-103. doi:10.1038/ismej.2011.82 77   54 Cited 56 times in Scopus56 1
Yilmaz, Pelin, Kottmann, Renzo, Field, Dawn, Knight, Rob, Cole, James R., Amaral-Zettler, Linda, Gilbert, Jack A., Karsch-Mizrachi, Ilene, Johnston, Anjanette, Cochrane, Guy, Vaughan, Robert, Hunter, Christopher, Park, Joonhong, Morrison, Norman, Rocca-Serra, Philippe, Sterk, Peter, Arumugam, Manimozhiyan, Bailey, Mark, Baumgartner, Laura, Birren, Bruce W., Blaser, Martin J., Bonazzi, Vivien, Booth, Tim, Bork, Peer, Bushman, Frederic D., Buttigieg, Pier Luigi., Chain, Patrick S. G., Charlson, Emily, Costello, Elizabeth K., Huot-Creasy, Heather, Dawyndt, Peter, DeSantis, Todd, Fierer, Noah, Fuhrman, JA, Gallery, Rachel E., Gevers, Dirk, Gibbs, Richard A., Gil, Inigo San, Gonzalez, Antonio, Gordon, Jeffrey I., Guralnick, Robert, Hankeln, Wolfgang, Highlander, Sarah, Hugenholtz, Philip, Jansson, J, Kau, Andrew L., Kelley, Scott T., Kennedy, Jerry, Knights, Dan, Koren, Omry, Kuczynski, Justin, Kyrpides, Nikos, Larsen, Robert, Lauber, Christian L., Legg, Teresa, Ley, Ruth E., Lozupone, Catherine A., Ludwig, Wolfgang, Lyons, Donna, Maguire, Eamonn, Methe, Barbara A., Meyer, Folker, Muegge, Brian, Nakielny, Sara, Nelson, Karen E., Nemergut, Diana, Neufeld, Josh D,, Newbold, Lindsay K., Oliver, Anna E., Pace, Norman R., Palanisamy, Giriprakash, Peplies, Jörg, Petrosino, Joseph, Proctor, Lita, Pruesse, Elmar, Quast, Christian, Raes, Jeroen, Ratnasingham, Sujeevan, Ravel, Jacques, Relman, David A., Assunta-Sansone, Susanna, Schloss, Patrick D., Schriml, Lynn, Sinha, Rohini, Smith, Michelle I., Sodergren, Erica, Spor, Aymé, Stombaugh, Jesse, Tiedje, James M, Ward, Doyle V., Weinstock, George M., Wendel, Doug, White, Owen, Whiteley, Andrew, Wilke, Andreas, Wortman, Jennifer R., Yatsunenko, Tany and Glockner, Frank Oliver (2011) Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology, 29 5: 415-420. doi:10.1038/nbt.1823 92   97 Cited 101 times in Scopus101 22
Harris, J. Kirk, Caporaso, J. Gregory, Walker, Jeffrey J., Spear, John R., Gold, Nicholas J., Robertson, Charles E., Hugenholtz, Philip, Goodrich, Julia, McDonald, Daniel, Knights, Dan, Marshall, Paul, Tufo, Henry, Knight, Rob and Pace, Norman R. (2013) Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. ISME Journal, 7 1: 50-60. doi:10.1038/ismej.2012.79 31   19 Cited 4 times in Scopus4 1
Knight, Rob, Jansson, Janet, Field, Dawn, Fierer, Noah, Desai, Narayan, Fuhrman, Jed A., Hugenholtz, Phil, van der Lelie, Daniel, Meyer, Folker, Stevens, Rick, Bailey, Mark J., Gordon, Jeffrey I., Kowalchuk, George A. and Gilbert, Jack A. (2012) Unlocking the potential of metagenomics through replicated experimental design. Nature Biotechnology, 30 6: 513-520. doi:10.1038/nbt.2235 99   56 Cited 52 times in Scopus52 6